|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 15368.BRADI2G17970.1 |
| PFAMs | DnaJ,DnaJ-X |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K02974 |
| KEGG Pathway | ko03010,map03010 |
| KEGG Module | M00177,M00179 |
| Evalue | 1.05e-38 |
| EggNOG OGs | COG2214@1|root,KOG0691@2759|Eukaryota,37NRP@33090|Viridiplantae,3GA6Y@35493|Streptophyta,3KM4B@4447|Liliopsida,3IDHQ@38820|Poales |
| Description | X-domain of DnaJ-containing |
| COG category | O |
| BRITE | br01610,ko00000,ko00001,ko00002,ko03011 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2990.t1.start1 | Ggra2990.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000858_pilon 822155..822157 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2990.t1.stop1 | Ggra2990.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000858_pilon 824840..824842 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra2990.t1 ID=Ggra2990.t1|Name=Ggra2990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=896bp MSALPGRESGSPRAQLRELDASLSSLSASDPALVAHLLRRHALHMSLHHV ATLPDPHSSPHLAHALRDAASAVNAAPQLPAVWLALFSAYHASADMRAAT RALHNALVHCPYDPALRLVAEAVLADSSPSPSVPPVAAAAAGAAAAAATA APMPSESVLVEHAHALNDALPNGTPPAPVASPPSPNHPQQRALRDAADAH QMAEYARAIQHYSLVVDAEPRPSPALLLRALLGRSEAHLSDAIGTDRPQS FHAAIADATAAVQLLPASEHAWYTLGTAHLQNAHPARAKSTFQRGLQHCP RAQSLLDGVRDAQFVIDKEGAESDSEMPPVASPSNHSPPPSQKRVATPPD SSASNPLQTPSRSERSFSLLSQRNRDSNRHDLYRSDADSRSLSSRFRFSK HDARTSSSERSAHNLSAEPASFSRLAASLSAYDKRTASMASPPTFTKSNS FANASASASAPASASASASASASASASASASTRAETNGSAPTSNDAFNTA NTDASSSSFSAHSRKELYELLQVPRDATEAMIKKSYYQLARKYHPDKNAG DQHATYKFQKLAEAYRVLSDPESRAVYDRYGDRGLVKNSVNNIDPSTLFA MVFGSDQFVNLIGELQLASLATNVDDSGNTPAEDVLNGIQRARVGKLVLE MVKMLKPWVDGDKKGFLENTNHLMHKLKDASFGPYLLNTVGNVYVQHTTH LLDKNRPFNLSAVVRKASMRSHKFASHHKALNAANRVMDKQKRLHDRVMR SGRDHKFISEDEAKKIAVEMAENAIDMMWKISIIDIETTLEDVLLIVLSG RDLVAESDMFAPSASPDSPSSSKPKYRRRIGSYLTRDGRERNEKARDRDR LESQLVRALPPLTHGEAAVTRQQVLSERAHGIQTMGRIFMMAYNR* back to topspliced messenger RNA >Ggra2990.t1 ID=Ggra2990.t1|Name=Ggra2990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2688bp|location=Sequence derived from alignment at tig00000858_pilon:822155..824842+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCGGCGCTCCCCGGgcgcgagtcgggatcgccgcgcgcgcagctgcg cgagctgGACGCGTCGCTGTCGTCGCTGTCGGCGTCGGACCCGGCGTTGG TGGCGCACTTACTGCGGCGCCACGCGTTGCACATGAGTCTGCATCACGTC GCCACGCTGCCGGACCCGCACTCGTCGCCGCACCTCGCGCACGCCCTCCG CGACGCCGCCAGCGCCGTCAACGCCGCGCCGCAGCTGCCCGCCGTGTGGC TGGCGTTGTTCTCGGCGTACCACGCCTCTGCCGACATGCGCGCCGCTACG CGCGCCTTGCATAACGCCCTCGTCCACTGCCCGTACGACCCCGCCCTGCG CCTCGTCGCCGAGGCCGTGCTGGCCGACTCGTCGCCCTCGCCGTCCGTGC CGCCCGTTgccgccgccgccgctggcgccgccgccgccgccgccaccgcc gcGCCCATGCCGTCCGAGAGTGTGCTGGTCGAACACGCTCACGCCTTGAA CGACGCGCTGCCCAACGGCACGCCGCCCGCGCCCGTGGCGTCGCCGCCGT CGCCCAATCATCCGCAGCAGCGCGCGCTGCGAGACGCCGCAGACGCGCAC CAGATGGCCGAGTACGCGCGCGCAATTCAGCACTATTCGCTCGTGGTGGA CGCCGAGCCGCGCCCGTCGCCCGCGCTGCTGCTGCGCGCGCTGCTGGGCA GAAGCGAGGCGCATCTGTCCGACGCAATTGGCACCGACCGCCCGCAGTCC TTCCACGCCGCCATTGCGGACGCTACCGCCGCCGTGCAGTTGCTCCCCGC CTCGGAGCATGCTTGGTACACGCTTGGCACCGCCCACTTGCAGAATGCCC ATCCCGCCCGCGCTAAGAGTACATTCCAACGCGGCTTGCAGCACTGCCCG CGCGCGCAGTCGCTGCTGGATGGCGTTCGAGACGCCCAGTTTGTCATTGA CAAGGAGGGCGCAGAGTCTGACTCCGAAATGCCCCCCGTCGCCTCCCCCT CCAACCATTCCCCTCCCCCGTCGCAGAAACGTGTCGCCACCCCTCCCGAC AGTTCTGCCTCAAATCCGTTGCAAACTCCCTCCCGAAGTGAGCGTAGTTT CAGCCTTTTATCGCAACGTAATCGCGATTCTAACCGCCACGACCTGTATC GATCTGATGCAGATTCACGTTCACTGTCTTCCCGTTTCCGTTTTTCCAAG CACGACGCCAGAACCTCTTCGTCTGAACGTAGTGCCCATAACCTCTCTGC CGAGCCTGCTTCGTTTAGTCGCCTTGCAGCTTCTTTGTCTGCCTACGACA AACGTACCGCTTCTATGGCTTCGCCTCCAACTTTCACCAAGTCCAATTCT TTCGCTAATgcctccgcctctgcctccgcccccgcctccgcctccgcctc cgcttctgcttctgcttctgcttcagcttctgcatctgcttcCACCAGGG CAGAGACCAATGGTTCCGCCCCTACATCAAATGATGCCTTCAACACTGCG AATACCGACGCGTCCAGTTCCTCCTTCTCGGCCCACAGCCGAAAGGAGCT GTATGAACTTTTGCAGGTTCCTCGAGATGCAACTGAGGCTATGATTAAGA AGAGCTATTATCAGCTGGCTCGCAAGTACCATCCAGATAAGAATGCTGGC GATCAACATGCCACTTACAAGTTTCAGAAGCTCGCAGAAGCATATCGCGT CTTGTCGGACCCGGAATCCCGCGCTGTGTATGACCGCTATGGTGACCGAG GCTTGGTGAAGAACAGCGTCAATAATATCGACCCATCCACATTGTTCGCT ATGGTGTTCGGCTCTGACCAATTTGTCAACCTTATTGGTGAATTACAACT CGCGAGCTTAGCTACCAATGTGGACGACAGCGGCAATACCCCCGCGGAAG ATGTGCTCAACGGCATTCAACGTGCACGAGTGGGGAAGCTTGTCCTGGAG ATGGTGAAGATGCTCAAACCGTGGGTCGATGGTGATAAGAAAGGCTTCCT CGAGAACACAAACCATTTGATGCACAAGTTGAAGGATGCCAGTTTTGGGC CATACCTGCTTAACACGGTTGGTAATGTGTATGTACAACACACAACACAC TTGCTTGACAAGAATCGACCCTTCAACCTTTCTGCTGTCGTGCGAAAGGC CTCCATGCGGTCGCACAAGTTTGCTTCACATCACAAGGCCCTCAACGCTG CCAACCGTGTGATGGATAAGCAGAAGAGGTTGCACGACAGAGTAATGCGG TCCGGGCGTGACCACAAGTTCATCTCTGAAGACGAAGCGAAGAAAATTGC CGTGGAAATGGCTGAGAATGCGATTGATATGATGTGGAAGATCTCCATAA TTGATATTGAGACAACATTGGAAGACGTTTTGCTGATTGTATTGTCAGGC AGAGACCTAGTTGCTGAGAGTGACATGTTTGCGCCTTCGGCTTCTCCTGA CTCTCCATCTTCTTCAAAGCCGAAATATCGAAGGCGAATTGGATCGTATC TCACACGAGACGGAAGAGAGAGGAATGAAAAGGCTCGAGACCGAGATCGC CTGGAATCCCAACTGGTGCGAGCTTTGCCCCCGCTAACTCACGGAGAAGC GGCAGTCACGAGACAACAGGTTTTGAGTGAGCGGGCCCATGGAATTCAGA CAATGGGGAGGATCTTCATGATGGCCTATAACCGATAG back to topprotein sequence of Ggra2990.t1 >Ggra2990.t1 ID=Ggra2990.t1|Name=Ggra2990.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=896bp
MSALPGRESGSPRAQLRELDASLSSLSASDPALVAHLLRRHALHMSLHHV ATLPDPHSSPHLAHALRDAASAVNAAPQLPAVWLALFSAYHASADMRAAT RALHNALVHCPYDPALRLVAEAVLADSSPSPSVPPVAAAAAGAAAAAATA APMPSESVLVEHAHALNDALPNGTPPAPVASPPSPNHPQQRALRDAADAH QMAEYARAIQHYSLVVDAEPRPSPALLLRALLGRSEAHLSDAIGTDRPQS FHAAIADATAAVQLLPASEHAWYTLGTAHLQNAHPARAKSTFQRGLQHCP RAQSLLDGVRDAQFVIDKEGAESDSEMPPVASPSNHSPPPSQKRVATPPD SSASNPLQTPSRSERSFSLLSQRNRDSNRHDLYRSDADSRSLSSRFRFSK HDARTSSSERSAHNLSAEPASFSRLAASLSAYDKRTASMASPPTFTKSNS FANASASASAPASASASASASASASASASASTRAETNGSAPTSNDAFNTA NTDASSSSFSAHSRKELYELLQVPRDATEAMIKKSYYQLARKYHPDKNAG DQHATYKFQKLAEAYRVLSDPESRAVYDRYGDRGLVKNSVNNIDPSTLFA MVFGSDQFVNLIGELQLASLATNVDDSGNTPAEDVLNGIQRARVGKLVLE MVKMLKPWVDGDKKGFLENTNHLMHKLKDASFGPYLLNTVGNVYVQHTTH LLDKNRPFNLSAVVRKASMRSHKFASHHKALNAANRVMDKQKRLHDRVMR SGRDHKFISEDEAKKIAVEMAENAIDMMWKISIIDIETTLEDVLLIVLSG RDLVAESDMFAPSASPDSPSSSKPKYRRRIGSYLTRDGRERNEKARDRDR LESQLVRALPPLTHGEAAVTRQQVLSERAHGIQTMGRIFMMAYNR* back to topmRNA from alignment at tig00000858_pilon:822155..824842+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra2990.t1 ID=Ggra2990.t1|Name=Ggra2990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2688bp|location=Sequence derived from alignment at tig00000858_pilon:822155..824842+ (Gracilaria gracilis GNS1m male) ATGTCGGCGCTCCCCGGgcgcgagtcgggatcgccgcgcgcgcagctgcg
cgagctgGACGCGTCGCTGTCGTCGCTGTCGGCGTCGGACCCGGCGTTGG
TGGCGCACTTACTGCGGCGCCACGCGTTGCACATGAGTCTGCATCACGTC
GCCACGCTGCCGGACCCGCACTCGTCGCCGCACCTCGCGCACGCCCTCCG
CGACGCCGCCAGCGCCGTCAACGCCGCGCCGCAGCTGCCCGCCGTGTGGC
TGGCGTTGTTCTCGGCGTACCACGCCTCTGCCGACATGCGCGCCGCTACG
CGCGCCTTGCATAACGCCCTCGTCCACTGCCCGTACGACCCCGCCCTGCG
CCTCGTCGCCGAGGCCGTGCTGGCCGACTCGTCGCCCTCGCCGTCCGTGC
CGCCCGTTgccgccgccgccgctggcgccgccgccgccgccgccaccgcc
gcGCCCATGCCGTCCGAGAGTGTGCTGGTCGAACACGCTCACGCCTTGAA
CGACGCGCTGCCCAACGGCACGCCGCCCGCGCCCGTGGCGTCGCCGCCGT
CGCCCAATCATCCGCAGCAGCGCGCGCTGCGAGACGCCGCAGACGCGCAC
CAGATGGCCGAGTACGCGCGCGCAATTCAGCACTATTCGCTCGTGGTGGA
CGCCGAGCCGCGCCCGTCGCCCGCGCTGCTGCTGCGCGCGCTGCTGGGCA
GAAGCGAGGCGCATCTGTCCGACGCAATTGGCACCGACCGCCCGCAGTCC
TTCCACGCCGCCATTGCGGACGCTACCGCCGCCGTGCAGTTGCTCCCCGC
CTCGGAGCATGCTTGGTACACGCTTGGCACCGCCCACTTGCAGAATGCCC
ATCCCGCCCGCGCTAAGAGTACATTCCAACGCGGCTTGCAGCACTGCCCG
CGCGCGCAGTCGCTGCTGGATGGCGTTCGAGACGCCCAGTTTGTCATTGA
CAAGGAGGGCGCAGAGTCTGACTCCGAAATGCCCCCCGTCGCCTCCCCCT
CCAACCATTCCCCTCCCCCGTCGCAGAAACGTGTCGCCACCCCTCCCGAC
AGTTCTGCCTCAAATCCGTTGCAAACTCCCTCCCGAAGTGAGCGTAGTTT
CAGCCTTTTATCGCAACGTAATCGCGATTCTAACCGCCACGACCTGTATC
GATCTGATGCAGATTCACGTTCACTGTCTTCCCGTTTCCGTTTTTCCAAG
CACGACGCCAGAACCTCTTCGTCTGAACGTAGTGCCCATAACCTCTCTGC
CGAGCCTGCTTCGTTTAGTCGCCTTGCAGCTTCTTTGTCTGCCTACGACA
AACGTACCGCTTCTATGGCTTCGCCTCCAACTTTCACCAAGTCCAATTCT
TTCGCTAATgcctccgcctctgcctccgcccccgcctccgcctccgcctc
cgcttctgcttctgcttctgcttcagcttctgcatctgcttcCACCAGGG
CAGAGACCAATGGTTCCGCCCCTACATCAAATGATGCCTTCAACACTGCG
AATACCGACGCGTCCAGTTCCTCCTTCTCGGCCCACAGCCGAAAGGAGCT
GTATGAACTTTTGCAGGTTCCTCGAGATGCAACTGAGGCTATGATTAAGA
AGAGCTATTATCAGCTGGCTCGCAAGTACCATCCAGATAAGAATGCTGGC
GATCAACATGCCACTTACAAGTTTCAGAAGCTCGCAGAAGCATATCGCGT
CTTGTCGGACCCGGAATCCCGCGCTGTGTATGACCGCTATGGTGACCGAG
GCTTGGTGAAGAACAGCGTCAATAATATCGACCCATCCACATTGTTCGCT
ATGGTGTTCGGCTCTGACCAATTTGTCAACCTTATTGGTGAATTACAACT
CGCGAGCTTAGCTACCAATGTGGACGACAGCGGCAATACCCCCGCGGAAG
ATGTGCTCAACGGCATTCAACGTGCACGAGTGGGGAAGCTTGTCCTGGAG
ATGGTGAAGATGCTCAAACCGTGGGTCGATGGTGATAAGAAAGGCTTCCT
CGAGAACACAAACCATTTGATGCACAAGTTGAAGGATGCCAGTTTTGGGC
CATACCTGCTTAACACGGTTGGTAATGTGTATGTACAACACACAACACAC
TTGCTTGACAAGAATCGACCCTTCAACCTTTCTGCTGTCGTGCGAAAGGC
CTCCATGCGGTCGCACAAGTTTGCTTCACATCACAAGGCCCTCAACGCTG
CCAACCGTGTGATGGATAAGCAGAAGAGGTTGCACGACAGAGTAATGCGG
TCCGGGCGTGACCACAAGTTCATCTCTGAAGACGAAGCGAAGAAAATTGC
CGTGGAAATGGCTGAGAATGCGATTGATATGATGTGGAAGATCTCCATAA
TTGATATTGAGACAACATTGGAAGACGTTTTGCTGATTGTATTGTCAGGC
AGAGACCTAGTTGCTGAGAGTGACATGTTTGCGCCTTCGGCTTCTCCTGA
CTCTCCATCTTCTTCAAAGCCGAAATATCGAAGGCGAATTGGATCGTATC
TCACACGAGACGGAAGAGAGAGGAATGAAAAGGCTCGAGACCGAGATCGC
CTGGAATCCCAACTGGTGCGAGCTTTGCCCCCGCTAACTCACGGAGAAGC
GGCAGTCACGAGACAACAGGTTTTGAGTGAGCGGGCCCATGGAATTCAGA
CAATGGGGAGGATCTTCATGATGGCCTATAACCGATAG back to topCoding sequence (CDS) from alignment at tig00000858_pilon:822155..824842+ >Ggra2990.t1 ID=Ggra2990.t1|Name=Ggra2990.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2688bp|location=Sequence derived from alignment at tig00000858_pilon:822155..824842+ (Gracilaria gracilis GNS1m male) ATGTCGGCGCTCCCCGGgcgcgagtcgggatcgccgcgcgcgcagctgcg cgagctgGACGCGTCGCTGTCGTCGCTGTCGGCGTCGGACCCGGCGTTGG TGGCGCACTTACTGCGGCGCCACGCGTTGCACATGAGTCTGCATCACGTC GCCACGCTGCCGGACCCGCACTCGTCGCCGCACCTCGCGCACGCCCTCCG CGACGCCGCCAGCGCCGTCAACGCCGCGCCGCAGCTGCCCGCCGTGTGGC TGGCGTTGTTCTCGGCGTACCACGCCTCTGCCGACATGCGCGCCGCTACG CGCGCCTTGCATAACGCCCTCGTCCACTGCCCGTACGACCCCGCCCTGCG CCTCGTCGCCGAGGCCGTGCTGGCCGACTCGTCGCCCTCGCCGTCCGTGC CGCCCGTTgccgccgccgccgctggcgccgccgccgccgccgccaccgcc gcGCCCATGCCGTCCGAGAGTGTGCTGGTCGAACACGCTCACGCCTTGAA CGACGCGCTGCCCAACGGCACGCCGCCCGCGCCCGTGGCGTCGCCGCCGT CGCCCAATCATCCGCAGCAGCGCGCGCTGCGAGACGCCGCAGACGCGCAC CAGATGGCCGAGTACGCGCGCGCAATTCAGCACTATTCGCTCGTGGTGGA CGCCGAGCCGCGCCCGTCGCCCGCGCTGCTGCTGCGCGCGCTGCTGGGCA GAAGCGAGGCGCATCTGTCCGACGCAATTGGCACCGACCGCCCGCAGTCC TTCCACGCCGCCATTGCGGACGCTACCGCCGCCGTGCAGTTGCTCCCCGC CTCGGAGCATGCTTGGTACACGCTTGGCACCGCCCACTTGCAGAATGCCC ATCCCGCCCGCGCTAAGAGTACATTCCAACGCGGCTTGCAGCACTGCCCG CGCGCGCAGTCGCTGCTGGATGGCGTTCGAGACGCCCAGTTTGTCATTGA CAAGGAGGGCGCAGAGTCTGACTCCGAAATGCCCCCCGTCGCCTCCCCCT CCAACCATTCCCCTCCCCCGTCGCAGAAACGTGTCGCCACCCCTCCCGAC AGTTCTGCCTCAAATCCGTTGCAAACTCCCTCCCGAAGTGAGCGTAGTTT CAGCCTTTTATCGCAACGTAATCGCGATTCTAACCGCCACGACCTGTATC GATCTGATGCAGATTCACGTTCACTGTCTTCCCGTTTCCGTTTTTCCAAG CACGACGCCAGAACCTCTTCGTCTGAACGTAGTGCCCATAACCTCTCTGC CGAGCCTGCTTCGTTTAGTCGCCTTGCAGCTTCTTTGTCTGCCTACGACA AACGTACCGCTTCTATGGCTTCGCCTCCAACTTTCACCAAGTCCAATTCT TTCGCTAATgcctccgcctctgcctccgcccccgcctccgcctccgcctc cgcttctgcttctgcttctgcttcagcttctgcatctgcttcCACCAGGG CAGAGACCAATGGTTCCGCCCCTACATCAAATGATGCCTTCAACACTGCG AATACCGACGCGTCCAGTTCCTCCTTCTCGGCCCACAGCCGAAAGGAGCT GTATGAACTTTTGCAGGTTCCTCGAGATGCAACTGAGGCTATGATTAAGA AGAGCTATTATCAGCTGGCTCGCAAGTACCATCCAGATAAGAATGCTGGC GATCAACATGCCACTTACAAGTTTCAGAAGCTCGCAGAAGCATATCGCGT CTTGTCGGACCCGGAATCCCGCGCTGTGTATGACCGCTATGGTGACCGAG GCTTGGTGAAGAACAGCGTCAATAATATCGACCCATCCACATTGTTCGCT ATGGTGTTCGGCTCTGACCAATTTGTCAACCTTATTGGTGAATTACAACT CGCGAGCTTAGCTACCAATGTGGACGACAGCGGCAATACCCCCGCGGAAG ATGTGCTCAACGGCATTCAACGTGCACGAGTGGGGAAGCTTGTCCTGGAG ATGGTGAAGATGCTCAAACCGTGGGTCGATGGTGATAAGAAAGGCTTCCT CGAGAACACAAACCATTTGATGCACAAGTTGAAGGATGCCAGTTTTGGGC CATACCTGCTTAACACGGTTGGTAATGTGTATGTACAACACACAACACAC TTGCTTGACAAGAATCGACCCTTCAACCTTTCTGCTGTCGTGCGAAAGGC CTCCATGCGGTCGCACAAGTTTGCTTCACATCACAAGGCCCTCAACGCTG CCAACCGTGTGATGGATAAGCAGAAGAGGTTGCACGACAGAGTAATGCGG TCCGGGCGTGACCACAAGTTCATCTCTGAAGACGAAGCGAAGAAAATTGC CGTGGAAATGGCTGAGAATGCGATTGATATGATGTGGAAGATCTCCATAA TTGATATTGAGACAACATTGGAAGACGTTTTGCTGATTGTATTGTCAGGC AGAGACCTAGTTGCTGAGAGTGACATGTTTGCGCCTTCGGCTTCTCCTGA CTCTCCATCTTCTTCAAAGCCGAAATATCGAAGGCGAATTGGATCGTATC TCACACGAGACGGAAGAGAGAGGAATGAAAAGGCTCGAGACCGAGATCGC CTGGAATCCCAACTGGTGCGAGCTTTGCCCCCGCTAACTCACGGAGAAGC GGCAGTCACGAGACAACAGGTTTTGAGTGAGCGGGCCCATGGAATTCAGA CAATGGGGAGGATCTTCATGATGGCCTATAACCGATAG back to top
|