Ggra2988.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2988.t1
Unique NameGgra2988.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:817110..818187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3760.EMJ24308
PFAMsCRCB
Max annot lvl35493|Streptophyta
KEGG koko:K06199
KEGG TC1.A.43.1,1.A.43.2,1.A.43.3
Evalue3.66e-29
EggNOG OGsCOG0239@1|root,2QT5F@2759|Eukaryota,37PKQ@33090|Viridiplantae,3GD7S@35493|Streptophyta,4JE0M@91835|fabids
DescriptionUPF0695 membrane protein
COG categoryD
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2988Ggra2988Gracilaria gracilis GNS1m malegenetig00000858_pilon 817110..818187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2988.t1Ggra2988.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 817110..818187 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2988.t1.start1Ggra2988.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 817110..817112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2988.t1.CDS1Ggra2988.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 817110..817371 +
Ggra2988.t1.CDS2Ggra2988.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 817478..818187 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2988.t1.exon1Ggra2988.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 817110..817371 +
Ggra2988.t1.exon2Ggra2988.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 817478..818187 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2988.t1.intron1Ggra2988.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 817372..817477 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2988.t1.stop1Ggra2988.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 818185..818187 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2988.t1 ID=Ggra2988.t1|Name=Ggra2988.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp
MTNDLPLKALGISTAATLGVLLRLAVNRLFGQGVGGITSGTSALFVDLPA
NFLGCFILGVHESMKNSFSYPDWFSLAISTGLAGSVTTFASWHLQLTVLL
VIGPRLDAFVAIPIGVAMAFLGLTLGKDFGDFLLHVLEKRGPAHVSSSEE
GVLQAAGQTRRTTSRAMQICVLLAAVLVFIGLYGAMVAGAIFDGNTFFVS
DRRFFWMCGVFAPFGALLRWWLSCFNGRAKKFPLGTFAANMTAMVVDLSI
AVILHIDRDISVAASFVLVAVVSGLGGSLSTVSTWVNEATKLKRVWRYVY
VLGTISAALILGLIMFGTAVWVS*
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spliced messenger RNA

>Ggra2988.t1 ID=Ggra2988.t1|Name=Ggra2988.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000858_pilon:817110..818187+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAATGATCTACCGCTCAAGGCATTGGGCATTAGTACGGCTGCTAC
GCTAGGAGTTTTGCTGCGTCTTGCCGTGAACCGTTTATTCGGTCAGGGTG
TTGGAGGCATTACTTCCGGTACCAGTGCTCTGTTTGTTGACTTGCCTGCA
AATTTTCTAGGATGCTTCATTCTTGGCGTCCATGAGTCGATGAAAAACAG
CTTTTCATATCCTGACTGGTTCAGCCTAGCCATTTCTACTGGCCTAGCAG
GAAGCGTGACAACTTTCGCTTCGTGGCATCTGCAGTTGACTGTGCTGCTT
GTAATAGGTCCAAGACTTGATGCGTTTGTTGCGATCCCTATAGGTGTAGC
TATGGCTTTTCTCGGCCTAACTCTTGGAAAGGACTTTGGTGACTTTCTTC
TTCACGTTCTTGAGAAGCGTGGACCAGCGCATGTTTCTAGCTCAGAAGAA
GGTGTCTTGCAGGCTGCTGGTCAAACAAGGCGTACAACGAGTAGAGCAAT
GCAGATATGTGTTTTGCTTGCCGCCGTCTTGGTTTTTATTGGTTTGTATG
GCGCTATGGTCGCCGGGGCAATTTTCGATGGTAACACTTTCTTCGTGTCC
GATCGACGATTTTTCTGGATGTGTGGTGTCTTTGCTCCATTTGGAGCTTT
GTTGAGATGGTGGTTATCTTGCTTCAATGGCCGAGCCAAAAAGTTTCCTC
TCGGAACTTTTGCAGCAAATATGACGGCAATGGTTGTCGACCTTTCTATC
GCTGTGATTCTGCACATAGACCGCGATATTTCAGTTGCTGCAAGTTTTGT
CTTGGTGGCGGTGGTTTCGGGACTTGGCGGTTCTCTTAGTACCGTATCTA
CGTGGGTGAACGAAGCGACCAAGCTCAAACGCGTATGGCGGTATGTTTAT
GTTCTTGGCACAATTTCGGCGGCATTGATTCTTGGTCTCATAATGTTTGG
GACTGCAGTTTGGGTAAGTTAA
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protein sequence of Ggra2988.t1

>Ggra2988.t1 ID=Ggra2988.t1|Name=Ggra2988.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=324bp
MTNDLPLKALGISTAATLGVLLRLAVNRLFGQGVGGITSGTSALFVDLPA
NFLGCFILGVHESMKNSFSYPDWFSLAISTGLAGSVTTFASWHLQLTVLL
VIGPRLDAFVAIPIGVAMAFLGLTLGKDFGDFLLHVLEKRGPAHVSSSEE
GVLQAAGQTRRTTSRAMQICVLLAAVLVFIGLYGAMVAGAIFDGNTFFVS
DRRFFWMCGVFAPFGALLRWWLSCFNGRAKKFPLGTFAANMTAMVVDLSI
AVILHIDRDISVAASFVLVAVVSGLGGSLSTVSTWVNEATKLKRVWRYVY
VLGTISAALILGLIMFGTAVWVS*
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mRNA from alignment at tig00000858_pilon:817110..818187+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2988.t1 ID=Ggra2988.t1|Name=Ggra2988.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1078bp|location=Sequence derived from alignment at tig00000858_pilon:817110..818187+ (Gracilaria gracilis GNS1m male)
ATGACGAATGATCTACCGCTCAAGGCATTGGGCATTAGTACGGCTGCTAC
GCTAGGAGTTTTGCTGCGTCTTGCCGTGAACCGTTTATTCGGTCAGGGTG
TTGGAGGCATTACTTCCGGTACCAGTGCTCTGTTTGTTGACTTGCCTGCA
AATTTTCTAGGATGCTTCATTCTTGGCGTCCATGAGTCGATGAAAAACAG
CTTTTCATATCCTGACTGGTTCAGCCTAGCCATTTCTACTGGCCTAGCAG
GAAGCGTGACAAGTAAGCTCTAGTTCAATATTGCAACGAGGGTAGGACAA
AAGTATCTGACTTTTTTTGCTATGCAATATGCGCAATGTCACTTTGACGC
CAATGTGAATAACCAAAGCTTTCGCTTCGTGGCATCTGCAGTTGACTGTG
CTGCTTGTAATAGGTCCAAGACTTGATGCGTTTGTTGCGATCCCTATAGG
TGTAGCTATGGCTTTTCTCGGCCTAACTCTTGGAAAGGACTTTGGTGACT
TTCTTCTTCACGTTCTTGAGAAGCGTGGACCAGCGCATGTTTCTAGCTCA
GAAGAAGGTGTCTTGCAGGCTGCTGGTCAAACAAGGCGTACAACGAGTAG
AGCAATGCAGATATGTGTTTTGCTTGCCGCCGTCTTGGTTTTTATTGGTT
TGTATGGCGCTATGGTCGCCGGGGCAATTTTCGATGGTAACACTTTCTTC
GTGTCCGATCGACGATTTTTCTGGATGTGTGGTGTCTTTGCTCCATTTGG
AGCTTTGTTGAGATGGTGGTTATCTTGCTTCAATGGCCGAGCCAAAAAGT
TTCCTCTCGGAACTTTTGCAGCAAATATGACGGCAATGGTTGTCGACCTT
TCTATCGCTGTGATTCTGCACATAGACCGCGATATTTCAGTTGCTGCAAG
TTTTGTCTTGGTGGCGGTGGTTTCGGGACTTGGCGGTTCTCTTAGTACCG
TATCTACGTGGGTGAACGAAGCGACCAAGCTCAAACGCGTATGGCGGTAT
GTTTATGTTCTTGGCACAATTTCGGCGGCATTGATTCTTGGTCTCATAAT
GTTTGGGACTGCAGTTTGGGTAAGTTAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:817110..818187+

>Ggra2988.t1 ID=Ggra2988.t1|Name=Ggra2988.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00000858_pilon:817110..818187+ (Gracilaria gracilis GNS1m male)
ATGACGAATGATCTACCGCTCAAGGCATTGGGCATTAGTACGGCTGCTAC
GCTAGGAGTTTTGCTGCGTCTTGCCGTGAACCGTTTATTCGGTCAGGGTG
TTGGAGGCATTACTTCCGGTACCAGTGCTCTGTTTGTTGACTTGCCTGCA
AATTTTCTAGGATGCTTCATTCTTGGCGTCCATGAGTCGATGAAAAACAG
CTTTTCATATCCTGACTGGTTCAGCCTAGCCATTTCTACTGGCCTAGCAG
GAAGCGTGACAACTTTCGCTTCGTGGCATCTGCAGTTGACTGTGCTGCTT
GTAATAGGTCCAAGACTTGATGCGTTTGTTGCGATCCCTATAGGTGTAGC
TATGGCTTTTCTCGGCCTAACTCTTGGAAAGGACTTTGGTGACTTTCTTC
TTCACGTTCTTGAGAAGCGTGGACCAGCGCATGTTTCTAGCTCAGAAGAA
GGTGTCTTGCAGGCTGCTGGTCAAACAAGGCGTACAACGAGTAGAGCAAT
GCAGATATGTGTTTTGCTTGCCGCCGTCTTGGTTTTTATTGGTTTGTATG
GCGCTATGGTCGCCGGGGCAATTTTCGATGGTAACACTTTCTTCGTGTCC
GATCGACGATTTTTCTGGATGTGTGGTGTCTTTGCTCCATTTGGAGCTTT
GTTGAGATGGTGGTTATCTTGCTTCAATGGCCGAGCCAAAAAGTTTCCTC
TCGGAACTTTTGCAGCAAATATGACGGCAATGGTTGTCGACCTTTCTATC
GCTGTGATTCTGCACATAGACCGCGATATTTCAGTTGCTGCAAGTTTTGT
CTTGGTGGCGGTGGTTTCGGGACTTGGCGGTTCTCTTAGTACCGTATCTA
CGTGGGTGAACGAAGCGACCAAGCTCAAACGCGTATGGCGGTATGTTTAT
GTTCTTGGCACAATTTCGGCGGCATTGATTCTTGGTCTCATAATGTTTGG
GACTGCAGTTTGGGTAAGTTAA
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