Ggra2986.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2986.t1
Unique NameGgra2986.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:814946..815656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2986Ggra2986Gracilaria gracilis GNS1m malegenetig00000858_pilon 814946..815656 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2986.t1.start1Ggra2986.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 814946..814948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2986.t1.CDS1Ggra2986.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 814946..815656 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2986.t1.exon1Ggra2986.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 814946..815656 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2986.t1.stop1Ggra2986.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 815654..815656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2986.t1Ggra2986.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 814946..815656 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2986.t1 ID=Ggra2986.t1|Name=Ggra2986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=237bp
MATVLFVHSALPLSSVRKRALALALVQARPFRSPQVSQRTTFISHSRSTN
IHESAPPSPPPRVDTVTSLHHDSRPPFHAPLHLFSYASCALLPMLTAAAQ
PALADDAPPSDPLSFIKGLQGNPLFDKILGITVFVLIIYATIGAIIVSID
GIIIKQNDARQKEWVRKRVDGEPYPKTIWSPELDTEFPPKAGTASSKSGL
NREQRRVEKKLQVKEEKEKKRKEAREAAKKKASDDQ*
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spliced messenger RNA

>Ggra2986.t1 ID=Ggra2986.t1|Name=Ggra2986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000858_pilon:814946..815656+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACTGTTCTGTTCGTCCATTCCGCGCTGCCATTAAGCTCGGTGCG
AAAACGTGCGCTGGCGTTGGCGTTGGTGCAAGCGCGTCCGTTTCGCTCAC
CGCAGGTGTCGCAGCGAACTACGTTCATCTCACACTCACGCTCAACTAAC
ATTCATGAATCCGCCCCACCCTCCCCGCCGCCGCGCGTTGACACCGTAAC
AAGTCTGCATCACGACTCGCGCCCACCTTTCCATGCACCGTTACATCTAT
TCAGCTATGCAAGCTGTGCGCTGCTCCCGATGCTCACCGCAGCGGCGCAG
CCAGCACTTGCAGACGATGCACCTCCCTCCGATCCGTTAAGCTTCATAAA
AGGGCTACAGGGAAATCCGCTCTTCGATAAGATTCTCGGCATCACAGTGT
TTGTGCTCATAATCTATGCCACAATCGGCGCCATCATCGTATCTATCGAC
GGTATCATCATAAAGCAGAACGACGCGCGTCAAAAGGAATGGGTGCGGAA
GAGAGTCGACGGCGAACCATATCCGAAGACGATCTGGTCGCCAGAGCTTG
ACACAGAATTCCCTCCAAAGGCTGGCACGGCTTCATCAAAGTCTGGCTTG
AATCGCGAACAACGTCGAGTTGAAAAGAAGTTGCAAGTCAAGGAGGAGAA
GGAAAAGAAGCGAAAGGAAGCTAGGGAAGCAGCCAAGAAAAAGGCTAGTG
ACGATCAATAG
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protein sequence of Ggra2986.t1

>Ggra2986.t1 ID=Ggra2986.t1|Name=Ggra2986.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=237bp
MATVLFVHSALPLSSVRKRALALALVQARPFRSPQVSQRTTFISHSRSTN
IHESAPPSPPPRVDTVTSLHHDSRPPFHAPLHLFSYASCALLPMLTAAAQ
PALADDAPPSDPLSFIKGLQGNPLFDKILGITVFVLIIYATIGAIIVSID
GIIIKQNDARQKEWVRKRVDGEPYPKTIWSPELDTEFPPKAGTASSKSGL
NREQRRVEKKLQVKEEKEKKRKEAREAAKKKASDDQ*
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mRNA from alignment at tig00000858_pilon:814946..815656+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2986.t1 ID=Ggra2986.t1|Name=Ggra2986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000858_pilon:814946..815656+ (Gracilaria gracilis GNS1m male)
ATGGCCACTGTTCTGTTCGTCCATTCCGCGCTGCCATTAAGCTCGGTGCG
AAAACGTGCGCTGGCGTTGGCGTTGGTGCAAGCGCGTCCGTTTCGCTCAC
CGCAGGTGTCGCAGCGAACTACGTTCATCTCACACTCACGCTCAACTAAC
ATTCATGAATCCGCCCCACCCTCCCCGCCGCCGCGCGTTGACACCGTAAC
AAGTCTGCATCACGACTCGCGCCCACCTTTCCATGCACCGTTACATCTAT
TCAGCTATGCAAGCTGTGCGCTGCTCCCGATGCTCACCGCAGCGGCGCAG
CCAGCACTTGCAGACGATGCACCTCCCTCCGATCCGTTAAGCTTCATAAA
AGGGCTACAGGGAAATCCGCTCTTCGATAAGATTCTCGGCATCACAGTGT
TTGTGCTCATAATCTATGCCACAATCGGCGCCATCATCGTATCTATCGAC
GGTATCATCATAAAGCAGAACGACGCGCGTCAAAAGGAATGGGTGCGGAA
GAGAGTCGACGGCGAACCATATCCGAAGACGATCTGGTCGCCAGAGCTTG
ACACAGAATTCCCTCCAAAGGCTGGCACGGCTTCATCAAAGTCTGGCTTG
AATCGCGAACAACGTCGAGTTGAAAAGAAGTTGCAAGTCAAGGAGGAGAA
GGAAAAGAAGCGAAAGGAAGCTAGGGAAGCAGCCAAGAAAAAGGCTAGTG
ACGATCAATAG
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Coding sequence (CDS) from alignment at tig00000858_pilon:814946..815656+

>Ggra2986.t1 ID=Ggra2986.t1|Name=Ggra2986.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00000858_pilon:814946..815656+ (Gracilaria gracilis GNS1m male)
ATGGCCACTGTTCTGTTCGTCCATTCCGCGCTGCCATTAAGCTCGGTGCG
AAAACGTGCGCTGGCGTTGGCGTTGGTGCAAGCGCGTCCGTTTCGCTCAC
CGCAGGTGTCGCAGCGAACTACGTTCATCTCACACTCACGCTCAACTAAC
ATTCATGAATCCGCCCCACCCTCCCCGCCGCCGCGCGTTGACACCGTAAC
AAGTCTGCATCACGACTCGCGCCCACCTTTCCATGCACCGTTACATCTAT
TCAGCTATGCAAGCTGTGCGCTGCTCCCGATGCTCACCGCAGCGGCGCAG
CCAGCACTTGCAGACGATGCACCTCCCTCCGATCCGTTAAGCTTCATAAA
AGGGCTACAGGGAAATCCGCTCTTCGATAAGATTCTCGGCATCACAGTGT
TTGTGCTCATAATCTATGCCACAATCGGCGCCATCATCGTATCTATCGAC
GGTATCATCATAAAGCAGAACGACGCGCGTCAAAAGGAATGGGTGCGGAA
GAGAGTCGACGGCGAACCATATCCGAAGACGATCTGGTCGCCAGAGCTTG
ACACAGAATTCCCTCCAAAGGCTGGCACGGCTTCATCAAAGTCTGGCTTG
AATCGCGAACAACGTCGAGTTGAAAAGAAGTTGCAAGTCAAGGAGGAGAA
GGAAAAGAAGCGAAAGGAAGCTAGGGAAGCAGCCAAGAAAAAGGCTAGTG
ACGATCAATAG
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