Ggra2982.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2982.t1
Unique NameGgra2982.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length605
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:802657..804471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702824.1
Preferred nameSRPR
PFAMsSRP-alpha_N,SRP54,SRP54_N
Max annot lvl2759|Eukaryota
KEGG koko:K06640,ko:K13431,ko:K21989
KEGG TC3.A.5.8
KEGG Pathwayko03060,ko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03060,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
GOsGO:0000166,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0002791,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0008104,GO:0008150,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030867,GO:0030968,GO:0031090,GO:0031175,GO:0031984,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061564,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090087,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098827,GO:0120036,GO:0120039,GO:1901265,GO:1901363,GO:1903530
Evalue5.1e-128
EggNOG OGsCOG0552@1|root,KOG0781@2759|Eukaryota
EC2.7.11.1
Descriptionsignal recognition particle binding
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02044,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2982Ggra2982Gracilaria gracilis GNS1m malegenetig00000858_pilon 802657..804471 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2982.t1.stop1Ggra2982.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 802657..802659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2982.t1.CDS1Ggra2982.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 802657..804471 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2982.t1.exon1Ggra2982.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 802657..804471 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2982.t1.start1Ggra2982.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 804469..804471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2982.t1Ggra2982.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 802657..804471 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2982.t1 ID=Ggra2982.t1|Name=Ggra2982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=605bp
MIDAFCIFERGGTILWSRSYVPLKGDPLAAFVRSVLLEDRLSLHEFSYQS
YSMLWLLDNQRGLVFVVLFQSKLRPAYAQELLQLARREFAHSVQFATSGV
SRLRCVDTSVDYSSFGKKFEEVTSVAERRAKQQSNKRASALSRRRSAENH
HDGTTNVDNESHASQPTHSHTNDTVSSEELKGATRRATMIRRLQSGAQRS
SKFKAKSAKPGDTGAQPPKARTKKMRPSAKAQQEDLSALDFSEPPPQQHG
HDDDDDAQLQEFRQRYLPSNVDYDNVHTSLSEDERDDEQERQEGGVFAYL
KTLAGMRSMTKSQLQPVMNQFCEFLIAKNVAQDVAEKLMDSVMSSLTGKQ
MQSMTSLNTTVRNAVHDALTRILTTRHGSDLVGEIKAKRSSGSKQPFVIT
FCGVNGVGKSTSLAKTCYFLRKQRLSVMIAACDTFRAGAVEQLRTHVKCL
GEGVQLFDKGYGKDAAGVAADAIRRARELGVDVVLVDTAGRMQDNEPLMR
ALAKLVEVNRPDRVLFVGEALVGNDGVDQLCKFNRALMDFQGGAEARLID
GIVLSKFDTIDDKVGAAVSMVYATGQPIVFVGVGQTYTDLRKMNTRALVN
ALLH*
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spliced messenger RNA

>Ggra2982.t1 ID=Ggra2982.t1|Name=Ggra2982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000858_pilon:802657..804471- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGACGCCTTTTGCATCTTTGAACGCGGCGGAACCATCCTGTGGAG
CCGCTCGTACGTGCCGCTCAAAGGCGACCCGCTCGCCGCGTTTGTGCGCT
CGGTGCTGCTCGAAGACCGCCTTTCATTGCACGAGTTTTCTTACCAGTCG
TACTCGATGCTGTGGCTGTTGGACAACCAGCGCGGGCTGGTGTTCGTCGT
GCTGTTCCAGAGCAAGTTGCGCCCCGCGTACGCGCAAGAGCTGTTACAAC
TGGCACGCCGCGAGTTTGCGCACAGCGTGCAATTCGCCACCAGCGGCGTT
TCGCGCCTCAGGTGCGTGGACACTTCGGTGGATTACTCCTCGTTCGGCAA
GAAGTTTGAGGAAGTGACCAGCGTGGCGGAACGACGCGCCAAGCAGCAAA
GCAACAAACGCGCCAGCGCCCTGTCTCGACGACGGTCGGCGGAGAACCAC
CACGACGGCACCACCAACGTCGACAACGAGTCGCATGCGTCGCAACCCAC
CCACAGTCACACCAACGACACCGTGTCGTCCGAGGAGCTCAAGGGCGCCA
CAAGACGCGCAACCATGATCCGCAGGCTGCAAAGCGGCGCTCAGCGCAGC
TCCAAGTTCAAAGCAAAGAGCGCCAAGCCCGGCGACACGGGCGCACAGCC
GCCAAAAGCGCGCACCAAGAAGATGCGCCCGTCCGCGAAGGCGCAGCAAG
AAGACTTGTCCGCGCTGGACTTTAGCGAACCGCCGCCGCAACAGCACGGC
CACGACGACGACGACGACGCACAGCTGCAAGAATTCCGCCAACGCTACCT
ACCGTCCAACGTGGACTACGACAACGTGCACACATCGCTGAGCGAAGACG
AGCGCGACGACGAGCAGGAGCGGCAGGAAGGCGGCGTGTTTGCGTACTTG
AAGACGCTGGCCGGCATGCGCAGCATGACGAAGAGCCAGCTGCAACCGGT
GATGAACCAGTTTTGCGAGTTTCTGATCGCCAAGAACGTGGCGCAGGACG
TGGCCGAAAAGCTGATGGACTCGGTGATGAGCAGCCTGACGGGCAAGCAG
ATGCAGTCGATGACGTCGCTGAACACGACGGTACGCAACGCGGTGCACGA
CGCGCTGACGCGCATTCTGACGACGCGGCACGGCAGCGACCTGGTGGGCG
AGATCAAGGCCAAGCGCAGCAGCGGCAGCAAGCAGCCGTTCGTGATCACG
TTCTGCGGGGTGAACGGGGTGGGCAAGAGCACGTCGCTGGCCAAGACGTG
CTACTTTCTGCGCAAGCAGCGGCTGTCGGTGATGATTGCGGCGTGCGACA
CGTTCCGCGCCGGCGCGGTGGAGCAGCTGCGCACGCACGTCAAGTGCCTG
GGCGAGGGCGTGCAGCTGTTCGACAAGGGGTACGGCAAGGACGCGGCGGG
GGTGGCGGCGGACGCGATCCGACGCGCGCGCGAGCTGGGCGTGGACGTGG
TGCTGGTGGACACGGCGGGGCGCATGCAGGACAACGAGCCGCTGATGCGC
GCGCTGGCCAAGCTGGTGGAGGTGAACCGGCCGGACCGCGTGCTGTTTGT
GGGCGAGGCGCTGGTGGGCAACGACGGCGTGGACCAGCTTTGCAAGTTCA
ACCGCGCGCTGATGGACTTTCAGGGCGGGGCGGAGGCGCGGCTGATCGAC
GGCATTGTGCTGAGCAAGTTCGACACGATCGACGACAAGGTGGGCGCGGC
CGTGTCGATGGTGTACGCCACTGGGCAGCCCATCGTGTTTGTGGGCGTGG
GACAGACGTACACGGACTTGCGTAAGATGAACACGCGCGCGCTGGTAAAC
GCGCTGCTGCACTGA
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protein sequence of Ggra2982.t1

>Ggra2982.t1 ID=Ggra2982.t1|Name=Ggra2982.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=605bp
MIDAFCIFERGGTILWSRSYVPLKGDPLAAFVRSVLLEDRLSLHEFSYQS
YSMLWLLDNQRGLVFVVLFQSKLRPAYAQELLQLARREFAHSVQFATSGV
SRLRCVDTSVDYSSFGKKFEEVTSVAERRAKQQSNKRASALSRRRSAENH
HDGTTNVDNESHASQPTHSHTNDTVSSEELKGATRRATMIRRLQSGAQRS
SKFKAKSAKPGDTGAQPPKARTKKMRPSAKAQQEDLSALDFSEPPPQQHG
HDDDDDAQLQEFRQRYLPSNVDYDNVHTSLSEDERDDEQERQEGGVFAYL
KTLAGMRSMTKSQLQPVMNQFCEFLIAKNVAQDVAEKLMDSVMSSLTGKQ
MQSMTSLNTTVRNAVHDALTRILTTRHGSDLVGEIKAKRSSGSKQPFVIT
FCGVNGVGKSTSLAKTCYFLRKQRLSVMIAACDTFRAGAVEQLRTHVKCL
GEGVQLFDKGYGKDAAGVAADAIRRARELGVDVVLVDTAGRMQDNEPLMR
ALAKLVEVNRPDRVLFVGEALVGNDGVDQLCKFNRALMDFQGGAEARLID
GIVLSKFDTIDDKVGAAVSMVYATGQPIVFVGVGQTYTDLRKMNTRALVN
ALLH*
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mRNA from alignment at tig00000858_pilon:802657..804471-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2982.t1 ID=Ggra2982.t1|Name=Ggra2982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000858_pilon:802657..804471- (Gracilaria gracilis GNS1m male)
ATGATTGACGCCTTTTGCATCTTTGAACGCGGCGGAACCATCCTGTGGAG
CCGCTCGTACGTGCCGCTCAAAGGCGACCCGCTCGCCGCGTTTGTGCGCT
CGGTGCTGCTCGAAGACCGCCTTTCATTGCACGAGTTTTCTTACCAGTCG
TACTCGATGCTGTGGCTGTTGGACAACCAGCGCGGGCTGGTGTTCGTCGT
GCTGTTCCAGAGCAAGTTGCGCCCCGCGTACGCGCAAGAGCTGTTACAAC
TGGCACGCCGCGAGTTTGCGCACAGCGTGCAATTCGCCACCAGCGGCGTT
TCGCGCCTCAGGTGCGTGGACACTTCGGTGGATTACTCCTCGTTCGGCAA
GAAGTTTGAGGAAGTGACCAGCGTGGCGGAACGACGCGCCAAGCAGCAAA
GCAACAAACGCGCCAGCGCCCTGTCTCGACGACGGTCGGCGGAGAACCAC
CACGACGGCACCACCAACGTCGACAACGAGTCGCATGCGTCGCAACCCAC
CCACAGTCACACCAACGACACCGTGTCGTCCGAGGAGCTCAAGGGCGCCA
CAAGACGCGCAACCATGATCCGCAGGCTGCAAAGCGGCGCTCAGCGCAGC
TCCAAGTTCAAAGCAAAGAGCGCCAAGCCCGGCGACACGGGCGCACAGCC
GCCAAAAGCGCGCACCAAGAAGATGCGCCCGTCCGCGAAGGCGCAGCAAG
AAGACTTGTCCGCGCTGGACTTTAGCGAACCGCCGCCGCAACAGCACGGC
CACGACGACGACGACGACGCACAGCTGCAAGAATTCCGCCAACGCTACCT
ACCGTCCAACGTGGACTACGACAACGTGCACACATCGCTGAGCGAAGACG
AGCGCGACGACGAGCAGGAGCGGCAGGAAGGCGGCGTGTTTGCGTACTTG
AAGACGCTGGCCGGCATGCGCAGCATGACGAAGAGCCAGCTGCAACCGGT
GATGAACCAGTTTTGCGAGTTTCTGATCGCCAAGAACGTGGCGCAGGACG
TGGCCGAAAAGCTGATGGACTCGGTGATGAGCAGCCTGACGGGCAAGCAG
ATGCAGTCGATGACGTCGCTGAACACGACGGTACGCAACGCGGTGCACGA
CGCGCTGACGCGCATTCTGACGACGCGGCACGGCAGCGACCTGGTGGGCG
AGATCAAGGCCAAGCGCAGCAGCGGCAGCAAGCAGCCGTTCGTGATCACG
TTCTGCGGGGTGAACGGGGTGGGCAAGAGCACGTCGCTGGCCAAGACGTG
CTACTTTCTGCGCAAGCAGCGGCTGTCGGTGATGATTGCGGCGTGCGACA
CGTTCCGCGCCGGCGCGGTGGAGCAGCTGCGCACGCACGTCAAGTGCCTG
GGCGAGGGCGTGCAGCTGTTCGACAAGGGGTACGGCAAGGACGCGGCGGG
GGTGGCGGCGGACGCGATCCGACGCGCGCGCGAGCTGGGCGTGGACGTGG
TGCTGGTGGACACGGCGGGGCGCATGCAGGACAACGAGCCGCTGATGCGC
GCGCTGGCCAAGCTGGTGGAGGTGAACCGGCCGGACCGCGTGCTGTTTGT
GGGCGAGGCGCTGGTGGGCAACGACGGCGTGGACCAGCTTTGCAAGTTCA
ACCGCGCGCTGATGGACTTTCAGGGCGGGGCGGAGGCGCGGCTGATCGAC
GGCATTGTGCTGAGCAAGTTCGACACGATCGACGACAAGGTGGGCGCGGC
CGTGTCGATGGTGTACGCCACTGGGCAGCCCATCGTGTTTGTGGGCGTGG
GACAGACGTACACGGACTTGCGTAAGATGAACACGCGCGCGCTGGTAAAC
GCGCTGCTGCACTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:802657..804471-

>Ggra2982.t1 ID=Ggra2982.t1|Name=Ggra2982.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1815bp|location=Sequence derived from alignment at tig00000858_pilon:802657..804471- (Gracilaria gracilis GNS1m male)
ATGATTGACGCCTTTTGCATCTTTGAACGCGGCGGAACCATCCTGTGGAG
CCGCTCGTACGTGCCGCTCAAAGGCGACCCGCTCGCCGCGTTTGTGCGCT
CGGTGCTGCTCGAAGACCGCCTTTCATTGCACGAGTTTTCTTACCAGTCG
TACTCGATGCTGTGGCTGTTGGACAACCAGCGCGGGCTGGTGTTCGTCGT
GCTGTTCCAGAGCAAGTTGCGCCCCGCGTACGCGCAAGAGCTGTTACAAC
TGGCACGCCGCGAGTTTGCGCACAGCGTGCAATTCGCCACCAGCGGCGTT
TCGCGCCTCAGGTGCGTGGACACTTCGGTGGATTACTCCTCGTTCGGCAA
GAAGTTTGAGGAAGTGACCAGCGTGGCGGAACGACGCGCCAAGCAGCAAA
GCAACAAACGCGCCAGCGCCCTGTCTCGACGACGGTCGGCGGAGAACCAC
CACGACGGCACCACCAACGTCGACAACGAGTCGCATGCGTCGCAACCCAC
CCACAGTCACACCAACGACACCGTGTCGTCCGAGGAGCTCAAGGGCGCCA
CAAGACGCGCAACCATGATCCGCAGGCTGCAAAGCGGCGCTCAGCGCAGC
TCCAAGTTCAAAGCAAAGAGCGCCAAGCCCGGCGACACGGGCGCACAGCC
GCCAAAAGCGCGCACCAAGAAGATGCGCCCGTCCGCGAAGGCGCAGCAAG
AAGACTTGTCCGCGCTGGACTTTAGCGAACCGCCGCCGCAACAGCACGGC
CACGACGACGACGACGACGCACAGCTGCAAGAATTCCGCCAACGCTACCT
ACCGTCCAACGTGGACTACGACAACGTGCACACATCGCTGAGCGAAGACG
AGCGCGACGACGAGCAGGAGCGGCAGGAAGGCGGCGTGTTTGCGTACTTG
AAGACGCTGGCCGGCATGCGCAGCATGACGAAGAGCCAGCTGCAACCGGT
GATGAACCAGTTTTGCGAGTTTCTGATCGCCAAGAACGTGGCGCAGGACG
TGGCCGAAAAGCTGATGGACTCGGTGATGAGCAGCCTGACGGGCAAGCAG
ATGCAGTCGATGACGTCGCTGAACACGACGGTACGCAACGCGGTGCACGA
CGCGCTGACGCGCATTCTGACGACGCGGCACGGCAGCGACCTGGTGGGCG
AGATCAAGGCCAAGCGCAGCAGCGGCAGCAAGCAGCCGTTCGTGATCACG
TTCTGCGGGGTGAACGGGGTGGGCAAGAGCACGTCGCTGGCCAAGACGTG
CTACTTTCTGCGCAAGCAGCGGCTGTCGGTGATGATTGCGGCGTGCGACA
CGTTCCGCGCCGGCGCGGTGGAGCAGCTGCGCACGCACGTCAAGTGCCTG
GGCGAGGGCGTGCAGCTGTTCGACAAGGGGTACGGCAAGGACGCGGCGGG
GGTGGCGGCGGACGCGATCCGACGCGCGCGCGAGCTGGGCGTGGACGTGG
TGCTGGTGGACACGGCGGGGCGCATGCAGGACAACGAGCCGCTGATGCGC
GCGCTGGCCAAGCTGGTGGAGGTGAACCGGCCGGACCGCGTGCTGTTTGT
GGGCGAGGCGCTGGTGGGCAACGACGGCGTGGACCAGCTTTGCAAGTTCA
ACCGCGCGCTGATGGACTTTCAGGGCGGGGCGGAGGCGCGGCTGATCGAC
GGCATTGTGCTGAGCAAGTTCGACACGATCGACGACAAGGTGGGCGCGGC
CGTGTCGATGGTGTACGCCACTGGGCAGCCCATCGTGTTTGTGGGCGTGG
GACAGACGTACACGGACTTGCGTAAGATGAACACGCGCGCGCTGGTAAAC
GCGCTGCTGCACTGA
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