Ggra2977.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2977.t1
Unique Name	Ggra2977.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	591

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:751193..752965 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48873
PFAMs	Exo_endo_phos,Mut7-C
Max annot lvl	2836\|Bacillariophyta
Evalue	1.89e-30
EggNOG OGs	COG5239@1\|root,KOG0620@2759\|Eukaryota,2XBS1@2836\|Bacillariophyta
Description	Endonuclease/Exonuclease/phosphatase family
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2977	Ggra2977	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 751193..752965 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2977.t1.start1	Ggra2977.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 751193..751195 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2977.t1.CDS1	Ggra2977.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 751193..752965 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2977.t1.exon1	Ggra2977.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 751193..752965 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2977.t1.stop1	Ggra2977.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 752963..752965 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2977.t1	Ggra2977.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 751193..752965 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:751193..752965+
coding sequence from alignment at tig00000858_pilon:751193..752965+

mRNA sequence

>Ggra2977.t1 ID=Ggra2977.t1|Name=Ggra2977.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp
MPLETKVTVISWNCLADSYALGTTVGKQRNCYRLISWPYRWQRISTILRK
YDADIVCLQEVDHYESHFRPLFADLKYTLRYVQRPGREDGVLVAFKTRNF
CLVRAERIYFDDLADVKTLHLPISIRDRLKRQNVALILVLKSNAVMMGGE
MMNTESFSVSTTHLYWNPIAPHIKLAQAIYLIERIGGVHGSIEKPPVASI
LTGDFNSLPRSQTYQRILSGTPFRASEIASRTNASHEACKHLVMKCRTGE
SIKFLCDSTLTRMMRWLRLLGVDVVLEDNYSEERRSQYNDFSFLFERART
ENRVIVTTSTSMLRRAMCPEVFIVNPSSGSLESQVSKLLNFYDVRLNKSD
ILTICGKCGGKIETCDTDDSRLEGKPIPRDRQLYVCVKCCQPYWNGDSES
AVSARALRQAQTLFAYVEADRKMNLPYLDRERNPGTHQKKSSSSLRIWDE
RPEVEVASKTAARASSLTTQRLLDSEQRVRTDDWLRYSSAFERVHKQEPM
YTNVNGTFRGTLDYIFVGGLCTVSSCEVVKWLSHKKEKRTFPNRDWPSDH
MLLYADIVLRKPVSGRSPFARSSSLSSLKTNAFDSISVEE*

spliced messenger RNA

>Ggra2977.t1 ID=Ggra2977.t1|Name=Ggra2977.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000858_pilon:751193..752965+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTGGAGACAAAAGTGACTGTGATTTCTTGGAACTGTCTTGCAGA
TAGCTACGCGCTAGGAACAACTGTTGGAAAACAAAGAAACTGCTATCGCC
TAATATCATGGCCATATCGCTGGCAGAGAATATCCACCATCCTTCGTAAG
TACGATGCTGACATCGTGTGCTTGCAAGAAGTAGACCATTATGAGAGTCA
TTTTAGACCACTCTTTGCTGATTTGAAATACACACTGCGTTACGTTCAGC
GACCTGGTCGAGAAGACGGTGTGCTGGTAGCGTTCAAGACTCGCAACTTT
TGTCTTGTTCGAGCGGAACGTATCTACTTTGATGACCTTGCGGATGTGAA
AACTCTGCACCTTCCTATCTCAATCAGGGATAGGTTAAAGAGGCAAAATG
TGGCTCTAATCCTTGTCTTGAAATCGAACGCCGTCATGATGGGCGGGGAG
ATGATGAATACGGAATCGTTTTCTGTGTCTACGACACACTTATATTGGAA
TCCAATTGCACCGCATATCAAGTTGGCGCAAGCAATATACCTCATCGAGC
GGATCGGCGGTGTACATGGGAGCATCGAAAAGCCACCTGTTGCTTCAATT
TTGACCGGAGATTTCAACAGTCTACCGAGAAGTCAGACATACCAGCGAAT
CTTGAGTGGCACTCCTTTTCGTGCGTCTGAAATTGCGTCGCGGACTAACG
CATCTCATGAGGCATGCAAGCATTTAGTCATGAAATGCAGAACCGGAGAG
AGTATCAAGTTCTTGTGTGATTCAACCCTGACGCGGATGATGAGGTGGTT
GCGTCTCCTCGGTGTTGATGTTGTTTTGGAAGACAATTATTCAGAAGAAA
GAAGGTCTCAGTACAATGACTTCTCCTTTCTTTTTGAGCGAGCCCGCACA
GAGAATCGTGTAATCGTAACGACGAGCACAAGCATGTTGCGTAGGGCTAT
GTGTCCGGAGGTTTTTATTGTGAATCCTTCTTCTGGAAGCTTGGAAAGCC
AAGTCTCTAAACTACTCAATTTCTATGATGTGAGGCTCAACAAATCTGAT
ATTCTTACCATCTGCGGAAAGTGCGGTGGTAAAATAGAAACTTGTGACAC
CGATGATTCGAGACTTGAGGGGAAACCCATTCCACGCGATCGCCAGCTAT
ATGTTTGTGTGAAGTGTTGTCAACCTTATTGGAATGGAGACTCAGAAAGT
GCTGTCTCTGCTCGAGCACTTCGCCAGGCTCAGACATTGTTCGCCTACGT
TGAAGCTGATAGAAAGATGAACTTGCCATACCTCGACAGGGAGCGCAATC
CTGGTACGCACCAGAAGAAATCTTCTTCGTCCCTTAGAATATGGGATGAA
CGCCCAGAAGTTGAAGTTGCTTCCAAGACGGCAGCGAGAGCCTCTTCATT
AACCACGCAACGCCTGCTGGATAGTGAACAACGAGTCCGAACCGATGATT
GGTTGCGCTACTCTTCAGCATTTGAGAGAGTCCACAAACAAGAGCCGATG
TATACAAATGTGAACGGAACATTTCGAGGGACTTTGGACTACATTTTTGT
TGGAGGTTTATGCACGGTGTCTAGCTGTGAAGTTGTGAAGTGGCTCTCAC
ATAAGAAAGAGAAACGTACTTTCCCCAACAGAGACTGGCCTAGTGATCAC
ATGCTACTCTATGCAGATATAGTCCTCCGAAAGCCTGTATCAGGCCGATC
TCCCTTCGCACGATCTTCTTCTCTATCCTCATTAAAGACCAATGCTTTCG
ATTCCATCTCCGTTGAAGAATGA

protein sequence of Ggra2977.t1

>Ggra2977.t1 ID=Ggra2977.t1|Name=Ggra2977.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=591bp
MPLETKVTVISWNCLADSYALGTTVGKQRNCYRLISWPYRWQRISTILRK
YDADIVCLQEVDHYESHFRPLFADLKYTLRYVQRPGREDGVLVAFKTRNF
CLVRAERIYFDDLADVKTLHLPISIRDRLKRQNVALILVLKSNAVMMGGE
MMNTESFSVSTTHLYWNPIAPHIKLAQAIYLIERIGGVHGSIEKPPVASI
LTGDFNSLPRSQTYQRILSGTPFRASEIASRTNASHEACKHLVMKCRTGE
SIKFLCDSTLTRMMRWLRLLGVDVVLEDNYSEERRSQYNDFSFLFERART
ENRVIVTTSTSMLRRAMCPEVFIVNPSSGSLESQVSKLLNFYDVRLNKSD
ILTICGKCGGKIETCDTDDSRLEGKPIPRDRQLYVCVKCCQPYWNGDSES
AVSARALRQAQTLFAYVEADRKMNLPYLDRERNPGTHQKKSSSSLRIWDE
RPEVEVASKTAARASSLTTQRLLDSEQRVRTDDWLRYSSAFERVHKQEPM
YTNVNGTFRGTLDYIFVGGLCTVSSCEVVKWLSHKKEKRTFPNRDWPSDH
MLLYADIVLRKPVSGRSPFARSSSLSSLKTNAFDSISVEE*

mRNA from alignment at tig00000858_pilon:751193..752965+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2977.t1 ID=Ggra2977.t1|Name=Ggra2977.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000858_pilon:751193..752965+ (Gracilaria gracilis GNS1m male)
ATGCCTCTGGAGACAAAAGTGACTGTGATTTCTTGGAACTGTCTTGCAGA
TAGCTACGCGCTAGGAACAACTGTTGGAAAACAAAGAAACTGCTATCGCC
TAATATCATGGCCATATCGCTGGCAGAGAATATCCACCATCCTTCGTAAG
TACGATGCTGACATCGTGTGCTTGCAAGAAGTAGACCATTATGAGAGTCA
TTTTAGACCACTCTTTGCTGATTTGAAATACACACTGCGTTACGTTCAGC
GACCTGGTCGAGAAGACGGTGTGCTGGTAGCGTTCAAGACTCGCAACTTT
TGTCTTGTTCGAGCGGAACGTATCTACTTTGATGACCTTGCGGATGTGAA
AACTCTGCACCTTCCTATCTCAATCAGGGATAGGTTAAAGAGGCAAAATG
TGGCTCTAATCCTTGTCTTGAAATCGAACGCCGTCATGATGGGCGGGGAG
ATGATGAATACGGAATCGTTTTCTGTGTCTACGACACACTTATATTGGAA
TCCAATTGCACCGCATATCAAGTTGGCGCAAGCAATATACCTCATCGAGC
GGATCGGCGGTGTACATGGGAGCATCGAAAAGCCACCTGTTGCTTCAATT
TTGACCGGAGATTTCAACAGTCTACCGAGAAGTCAGACATACCAGCGAAT
CTTGAGTGGCACTCCTTTTCGTGCGTCTGAAATTGCGTCGCGGACTAACG
CATCTCATGAGGCATGCAAGCATTTAGTCATGAAATGCAGAACCGGAGAG
AGTATCAAGTTCTTGTGTGATTCAACCCTGACGCGGATGATGAGGTGGTT
GCGTCTCCTCGGTGTTGATGTTGTTTTGGAAGACAATTATTCAGAAGAAA
GAAGGTCTCAGTACAATGACTTCTCCTTTCTTTTTGAGCGAGCCCGCACA
GAGAATCGTGTAATCGTAACGACGAGCACAAGCATGTTGCGTAGGGCTAT
GTGTCCGGAGGTTTTTATTGTGAATCCTTCTTCTGGAAGCTTGGAAAGCC
AAGTCTCTAAACTACTCAATTTCTATGATGTGAGGCTCAACAAATCTGAT
ATTCTTACCATCTGCGGAAAGTGCGGTGGTAAAATAGAAACTTGTGACAC
CGATGATTCGAGACTTGAGGGGAAACCCATTCCACGCGATCGCCAGCTAT
ATGTTTGTGTGAAGTGTTGTCAACCTTATTGGAATGGAGACTCAGAAAGT
GCTGTCTCTGCTCGAGCACTTCGCCAGGCTCAGACATTGTTCGCCTACGT
TGAAGCTGATAGAAAGATGAACTTGCCATACCTCGACAGGGAGCGCAATC
CTGGTACGCACCAGAAGAAATCTTCTTCGTCCCTTAGAATATGGGATGAA
CGCCCAGAAGTTGAAGTTGCTTCCAAGACGGCAGCGAGAGCCTCTTCATT
AACCACGCAACGCCTGCTGGATAGTGAACAACGAGTCCGAACCGATGATT
GGTTGCGCTACTCTTCAGCATTTGAGAGAGTCCACAAACAAGAGCCGATG
TATACAAATGTGAACGGAACATTTCGAGGGACTTTGGACTACATTTTTGT
TGGAGGTTTATGCACGGTGTCTAGCTGTGAAGTTGTGAAGTGGCTCTCAC
ATAAGAAAGAGAAACGTACTTTCCCCAACAGAGACTGGCCTAGTGATCAC
ATGCTACTCTATGCAGATATAGTCCTCCGAAAGCCTGTATCAGGCCGATC
TCCCTTCGCACGATCTTCTTCTCTATCCTCATTAAAGACCAATGCTTTCG
ATTCCATCTCCGTTGAAGAATGA

Coding sequence (CDS) from alignment at tig00000858_pilon:751193..752965+

>Ggra2977.t1 ID=Ggra2977.t1|Name=Ggra2977.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1773bp|location=Sequence derived from alignment at tig00000858_pilon:751193..752965+ (Gracilaria gracilis GNS1m male)
ATGCCTCTGGAGACAAAAGTGACTGTGATTTCTTGGAACTGTCTTGCAGA
TAGCTACGCGCTAGGAACAACTGTTGGAAAACAAAGAAACTGCTATCGCC
TAATATCATGGCCATATCGCTGGCAGAGAATATCCACCATCCTTCGTAAG
TACGATGCTGACATCGTGTGCTTGCAAGAAGTAGACCATTATGAGAGTCA
TTTTAGACCACTCTTTGCTGATTTGAAATACACACTGCGTTACGTTCAGC
GACCTGGTCGAGAAGACGGTGTGCTGGTAGCGTTCAAGACTCGCAACTTT
TGTCTTGTTCGAGCGGAACGTATCTACTTTGATGACCTTGCGGATGTGAA
AACTCTGCACCTTCCTATCTCAATCAGGGATAGGTTAAAGAGGCAAAATG
TGGCTCTAATCCTTGTCTTGAAATCGAACGCCGTCATGATGGGCGGGGAG
ATGATGAATACGGAATCGTTTTCTGTGTCTACGACACACTTATATTGGAA
TCCAATTGCACCGCATATCAAGTTGGCGCAAGCAATATACCTCATCGAGC
GGATCGGCGGTGTACATGGGAGCATCGAAAAGCCACCTGTTGCTTCAATT
TTGACCGGAGATTTCAACAGTCTACCGAGAAGTCAGACATACCAGCGAAT
CTTGAGTGGCACTCCTTTTCGTGCGTCTGAAATTGCGTCGCGGACTAACG
CATCTCATGAGGCATGCAAGCATTTAGTCATGAAATGCAGAACCGGAGAG
AGTATCAAGTTCTTGTGTGATTCAACCCTGACGCGGATGATGAGGTGGTT
GCGTCTCCTCGGTGTTGATGTTGTTTTGGAAGACAATTATTCAGAAGAAA
GAAGGTCTCAGTACAATGACTTCTCCTTTCTTTTTGAGCGAGCCCGCACA
GAGAATCGTGTAATCGTAACGACGAGCACAAGCATGTTGCGTAGGGCTAT
GTGTCCGGAGGTTTTTATTGTGAATCCTTCTTCTGGAAGCTTGGAAAGCC
AAGTCTCTAAACTACTCAATTTCTATGATGTGAGGCTCAACAAATCTGAT
ATTCTTACCATCTGCGGAAAGTGCGGTGGTAAAATAGAAACTTGTGACAC
CGATGATTCGAGACTTGAGGGGAAACCCATTCCACGCGATCGCCAGCTAT
ATGTTTGTGTGAAGTGTTGTCAACCTTATTGGAATGGAGACTCAGAAAGT
GCTGTCTCTGCTCGAGCACTTCGCCAGGCTCAGACATTGTTCGCCTACGT
TGAAGCTGATAGAAAGATGAACTTGCCATACCTCGACAGGGAGCGCAATC
CTGGTACGCACCAGAAGAAATCTTCTTCGTCCCTTAGAATATGGGATGAA
CGCCCAGAAGTTGAAGTTGCTTCCAAGACGGCAGCGAGAGCCTCTTCATT
AACCACGCAACGCCTGCTGGATAGTGAACAACGAGTCCGAACCGATGATT
GGTTGCGCTACTCTTCAGCATTTGAGAGAGTCCACAAACAAGAGCCGATG
TATACAAATGTGAACGGAACATTTCGAGGGACTTTGGACTACATTTTTGT
TGGAGGTTTATGCACGGTGTCTAGCTGTGAAGTTGTGAAGTGGCTCTCAC
ATAAGAAAGAGAAACGTACTTTCCCCAACAGAGACTGGCCTAGTGATCAC
ATGCTACTCTATGCAGATATAGTCCTCCGAAAGCCTGTATCAGGCCGATC
TCCCTTCGCACGATCTTCTTCTCTATCCTCATTAAAGACCAATGCTTTCG
ATTCCATCTCCGTTGAAGAATGA