Ggra2975.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2975.t1
Unique NameGgra2975.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:744086..745426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog132113.XP_003485607.1
Preferred namednr1
PFAMsFERM_C,FERM_M,FERM_N,zf-C3HC4_3
Max annot lvl33208|Metazoa
KEGG koko:K10637
KEGG Pathwayko04979,map04979
GOsGO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002700,GO:0002701,GO:0002759,GO:0002784,GO:0002785,GO:0002786,GO:0002787,GO:0002805,GO:0002806,GO:0002808,GO:0002809,GO:0002813,GO:0002814,GO:0002831,GO:0002832,GO:0002920,GO:0002921,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008348,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0030431,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031348,GO:0032101,GO:0032102,GO:0032446,GO:0032501,GO:0034248,GO:0034249,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0065007,GO:0070647,GO:0071704,GO:0080134,GO:0140096,GO:1900424,GO:1900425,GO:1901564
Evalue0.000118
EggNOG OGs28NMI@1|root,2QV76@2759|Eukaryota,38G93@33154|Opisthokonta,3B95T@33208|Metazoa,3CU47@33213|Bilateria,41TFY@6656|Arthropoda,3SGJR@50557|Insecta,46K4S@7399|Hymenoptera
EC2.3.2.27
DescriptionFERM C-terminal PH-like domain
COG categoryT
BRITEko00000,ko00001,ko01000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2975Ggra2975Gracilaria gracilis GNS1m malegenetig00000858_pilon 744086..745426 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2975.t1.start1Ggra2975.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 744086..744088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2975.t1.CDS1Ggra2975.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 744086..745426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2975.t1.exon1Ggra2975.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 744086..745426 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2975.t1.stop1Ggra2975.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 745424..745426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2975.t1Ggra2975.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 744086..745426 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2975.t1 ID=Ggra2975.t1|Name=Ggra2975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp
MPAVRAASCPPSSPASSRSRTSDSATLSSLSLAPLHLNSSPATAATAVCV
VCMDRHKDIALLPCQHAHCCLACLRRSETRLCPICRAPVLHIRVLRSGAI
HPFASLAPPPTPRPQRLRFVASNPRLSMPNLPHAAPAPSPPAAPMRPRAT
SLSSLNAVATQAESSLRSLSQWEHAAIHHLRRTGSLPPSAAPRAHRSCSS
TALSTSSASSFSSATDLPIPRARQLPNIVLIGHSRAIMINLAHRLVSAFP
PPPNPSAHHRPIKSTVYINGQLLRLVLIECPPHASPSHIAARVQRQAPKL
VLLCADFYNMSSFESVVRLDMDILDYLNLACIWVLMKSSAKRKHPSNSVD
DTDVSAANHFLSSPRRCFVVAVDGIQRSVNVKRLGMFIHRSANDASRPTP
ARAFVRHSRFPVAKSLSLFCLSVHRSNDKTRPPPSRLVRLPRWLCH*
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spliced messenger RNA

>Ggra2975.t1 ID=Ggra2975.t1|Name=Ggra2975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000858_pilon:744086..745426+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGCCGTGCGTGCCGCGTCCTGTCCCCCGTCGTCGCCGGCTAGCTC
GCGCTCCCGTACCTCCGATTCCGCAACCCTTTCGTCGCTCTCCCTCGCCC
CGCTTCACCTCAATTCTTcccccgccaccgccgccaccgccgTCTGCGTC
GTGTGCATGGACCGTCACAAGGACATTGCGCTGCTTCCCTGCCAACACGC
CCACTGCTGCCTCGCCTGTCTCCGCCGTTCCGAAACCCGTCTGTGCCCGA
TTTGTCGCGCGCCCGTGCTGCACATCCGCGTGCTGCGTTCCGGCGCCATC
CACCCGTTCGCCTCCCTGGCGCCGCCGCCGACGCCCCGCCCCCAGCGCCT
GCGTTTCGTCGCGTCCAACCCGCGCCTCAGCATGCCCAACCTCCCGCACG
CCGCGCCTGCACCGTCGCCGCCCGCCGCGCCCATGCGCCCGCGCGCCACT
TCGCTGTCCTCGCTCAACGCCGTCGCCACGCAGGCGGAGTCGTCGCTTCG
ATCCCTGTCGCAATGGGAGCACGCTGCCATTCATCACCTTCGTCGCACCG
GCTCCTTGCCGCCGTCTGCCGCCCCGCGCGCGCATCGCAGTTGCTCATCC
ACCGCGCTGTCGACGTCCTCCGCCTCCTCCTTTTCGTCCGCAACCGATCT
GCCCATCCCGCGCGCGCGCCAACTGCCTAACATCGTGCTCATCGGCCACT
CGCGCGCAATCATGATCAACCTTGCCCACCGCCTCGTGTCGGCTTTTCCC
CCGCCGCCGAACCCGAGCGCACACCACCGCCCGATCAAATCCACCGTGTA
TATTAACGGCCAACTGCTCCGCCTTGTACTCATCGAATGCCCGCCACACG
CATCGCCCTCCCATATCGCCGCGCGCGTGCAGCGCCAGGCGCCAAAACTT
GTGCTGCTTTGCGCTGACTTCTACAATATGTCTTCGTTTGAATCGGTCGT
GCGCCTCGACATGGACATTCTGGACTATCTCAACTTGGCGTGCATCTGGG
TTTTGATGAAATCGTCCGCCAAACGGAAGCATCCCTCCAATTCTGTTGAC
GACACGGATGTGTCTGCTGCCAATCACTTTTTGAGCTCCCCTCGCCGCTG
CTTTGTCGTCGCCGTGGATGGTATTCAACGCAGTGTCAATGTCAAAAGGC
TTGGTATGTTCATTCATCGGTCTGCCAATGATGCCTCTAGACCCACGCCT
GCACGTGCGTTTGTCCGCCATTCGCGCTTCCCGGTCGCCAAGTCGTTGTC
GTTGTTTTGCCTCTCTGTACATAGATCAAATGACAAGACAAGACCCCCGC
CAAGTCGATTGGTGCGCCTCCCACGTTGGCTGTGCCATTAG
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protein sequence of Ggra2975.t1

>Ggra2975.t1 ID=Ggra2975.t1|Name=Ggra2975.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=447bp
MPAVRAASCPPSSPASSRSRTSDSATLSSLSLAPLHLNSSPATAATAVCV
VCMDRHKDIALLPCQHAHCCLACLRRSETRLCPICRAPVLHIRVLRSGAI
HPFASLAPPPTPRPQRLRFVASNPRLSMPNLPHAAPAPSPPAAPMRPRAT
SLSSLNAVATQAESSLRSLSQWEHAAIHHLRRTGSLPPSAAPRAHRSCSS
TALSTSSASSFSSATDLPIPRARQLPNIVLIGHSRAIMINLAHRLVSAFP
PPPNPSAHHRPIKSTVYINGQLLRLVLIECPPHASPSHIAARVQRQAPKL
VLLCADFYNMSSFESVVRLDMDILDYLNLACIWVLMKSSAKRKHPSNSVD
DTDVSAANHFLSSPRRCFVVAVDGIQRSVNVKRLGMFIHRSANDASRPTP
ARAFVRHSRFPVAKSLSLFCLSVHRSNDKTRPPPSRLVRLPRWLCH*
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mRNA from alignment at tig00000858_pilon:744086..745426+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2975.t1 ID=Ggra2975.t1|Name=Ggra2975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000858_pilon:744086..745426+ (Gracilaria gracilis GNS1m male)
ATGCCAGCCGTGCGTGCCGCGTCCTGTCCCCCGTCGTCGCCGGCTAGCTC
GCGCTCCCGTACCTCCGATTCCGCAACCCTTTCGTCGCTCTCCCTCGCCC
CGCTTCACCTCAATTCTTcccccgccaccgccgccaccgccgTCTGCGTC
GTGTGCATGGACCGTCACAAGGACATTGCGCTGCTTCCCTGCCAACACGC
CCACTGCTGCCTCGCCTGTCTCCGCCGTTCCGAAACCCGTCTGTGCCCGA
TTTGTCGCGCGCCCGTGCTGCACATCCGCGTGCTGCGTTCCGGCGCCATC
CACCCGTTCGCCTCCCTGGCGCCGCCGCCGACGCCCCGCCCCCAGCGCCT
GCGTTTCGTCGCGTCCAACCCGCGCCTCAGCATGCCCAACCTCCCGCACG
CCGCGCCTGCACCGTCGCCGCCCGCCGCGCCCATGCGCCCGCGCGCCACT
TCGCTGTCCTCGCTCAACGCCGTCGCCACGCAGGCGGAGTCGTCGCTTCG
ATCCCTGTCGCAATGGGAGCACGCTGCCATTCATCACCTTCGTCGCACCG
GCTCCTTGCCGCCGTCTGCCGCCCCGCGCGCGCATCGCAGTTGCTCATCC
ACCGCGCTGTCGACGTCCTCCGCCTCCTCCTTTTCGTCCGCAACCGATCT
GCCCATCCCGCGCGCGCGCCAACTGCCTAACATCGTGCTCATCGGCCACT
CGCGCGCAATCATGATCAACCTTGCCCACCGCCTCGTGTCGGCTTTTCCC
CCGCCGCCGAACCCGAGCGCACACCACCGCCCGATCAAATCCACCGTGTA
TATTAACGGCCAACTGCTCCGCCTTGTACTCATCGAATGCCCGCCACACG
CATCGCCCTCCCATATCGCCGCGCGCGTGCAGCGCCAGGCGCCAAAACTT
GTGCTGCTTTGCGCTGACTTCTACAATATGTCTTCGTTTGAATCGGTCGT
GCGCCTCGACATGGACATTCTGGACTATCTCAACTTGGCGTGCATCTGGG
TTTTGATGAAATCGTCCGCCAAACGGAAGCATCCCTCCAATTCTGTTGAC
GACACGGATGTGTCTGCTGCCAATCACTTTTTGAGCTCCCCTCGCCGCTG
CTTTGTCGTCGCCGTGGATGGTATTCAACGCAGTGTCAATGTCAAAAGGC
TTGGTATGTTCATTCATCGGTCTGCCAATGATGCCTCTAGACCCACGCCT
GCACGTGCGTTTGTCCGCCATTCGCGCTTCCCGGTCGCCAAGTCGTTGTC
GTTGTTTTGCCTCTCTGTACATAGATCAAATGACAAGACAAGACCCCCGC
CAAGTCGATTGGTGCGCCTCCCACGTTGGCTGTGCCATTAG
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Coding sequence (CDS) from alignment at tig00000858_pilon:744086..745426+

>Ggra2975.t1 ID=Ggra2975.t1|Name=Ggra2975.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1341bp|location=Sequence derived from alignment at tig00000858_pilon:744086..745426+ (Gracilaria gracilis GNS1m male)
ATGCCAGCCGTGCGTGCCGCGTCCTGTCCCCCGTCGTCGCCGGCTAGCTC
GCGCTCCCGTACCTCCGATTCCGCAACCCTTTCGTCGCTCTCCCTCGCCC
CGCTTCACCTCAATTCTTcccccgccaccgccgccaccgccgTCTGCGTC
GTGTGCATGGACCGTCACAAGGACATTGCGCTGCTTCCCTGCCAACACGC
CCACTGCTGCCTCGCCTGTCTCCGCCGTTCCGAAACCCGTCTGTGCCCGA
TTTGTCGCGCGCCCGTGCTGCACATCCGCGTGCTGCGTTCCGGCGCCATC
CACCCGTTCGCCTCCCTGGCGCCGCCGCCGACGCCCCGCCCCCAGCGCCT
GCGTTTCGTCGCGTCCAACCCGCGCCTCAGCATGCCCAACCTCCCGCACG
CCGCGCCTGCACCGTCGCCGCCCGCCGCGCCCATGCGCCCGCGCGCCACT
TCGCTGTCCTCGCTCAACGCCGTCGCCACGCAGGCGGAGTCGTCGCTTCG
ATCCCTGTCGCAATGGGAGCACGCTGCCATTCATCACCTTCGTCGCACCG
GCTCCTTGCCGCCGTCTGCCGCCCCGCGCGCGCATCGCAGTTGCTCATCC
ACCGCGCTGTCGACGTCCTCCGCCTCCTCCTTTTCGTCCGCAACCGATCT
GCCCATCCCGCGCGCGCGCCAACTGCCTAACATCGTGCTCATCGGCCACT
CGCGCGCAATCATGATCAACCTTGCCCACCGCCTCGTGTCGGCTTTTCCC
CCGCCGCCGAACCCGAGCGCACACCACCGCCCGATCAAATCCACCGTGTA
TATTAACGGCCAACTGCTCCGCCTTGTACTCATCGAATGCCCGCCACACG
CATCGCCCTCCCATATCGCCGCGCGCGTGCAGCGCCAGGCGCCAAAACTT
GTGCTGCTTTGCGCTGACTTCTACAATATGTCTTCGTTTGAATCGGTCGT
GCGCCTCGACATGGACATTCTGGACTATCTCAACTTGGCGTGCATCTGGG
TTTTGATGAAATCGTCCGCCAAACGGAAGCATCCCTCCAATTCTGTTGAC
GACACGGATGTGTCTGCTGCCAATCACTTTTTGAGCTCCCCTCGCCGCTG
CTTTGTCGTCGCCGTGGATGGTATTCAACGCAGTGTCAATGTCAAAAGGC
TTGGTATGTTCATTCATCGGTCTGCCAATGATGCCTCTAGACCCACGCCT
GCACGTGCGTTTGTCCGCCATTCGCGCTTCCCGGTCGCCAAGTCGTTGTC
GTTGTTTTGCCTCTCTGTACATAGATCAAATGACAAGACAAGACCCCCGC
CAAGTCGATTGGTGCGCCTCCCACGTTGGCTGTGCCATTAG
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