Ggra2968.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2968.t1
Unique NameGgra2968.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:721233..722863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4555.Si022593m
PFAMsDnaJ,DnaJ-X
Max annot lvl35493|Streptophyta
KEGG koko:K02974
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Evalue7.7e-51
EggNOG OGsCOG2214@1|root,KOG0691@2759|Eukaryota,37NRP@33090|Viridiplantae,3GA6Y@35493|Streptophyta,3KM4B@4447|Liliopsida,3IDHQ@38820|Poales
DescriptionX-domain of DnaJ-containing
COG categoryO
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2968Ggra2968Gracilaria gracilis GNS1m malegenetig00000858_pilon 721233..722863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2968.t1Ggra2968.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 721233..722863 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2968.t1.stop1Ggra2968.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 721233..721235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2968.t1.CDS1Ggra2968.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 721233..722058 -
Ggra2968.t1.CDS2Ggra2968.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 722175..722863 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2968.t1.exon1Ggra2968.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 721233..722058 -
Ggra2968.t1.exon2Ggra2968.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 722175..722863 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2968.t1.intron1Ggra2968.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 722059..722174 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2968.t1.start1Ggra2968.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 722861..722863 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2968.t1 ID=Ggra2968.t1|Name=Ggra2968.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=505bp
MTDDHHQNQQQQQPNEDDPQNPHRELLMEAAAQLRADQVAREEARPKNVG
QGTLGLVGDSLGGAAIGAAALVMGPIQGYRENGAKGLLGGAVGGLAVGVA
ATAYGVGSGLTKFAHGAKETARSFDSSSTDERLRVSESDRQPVGVYKAER
NRLYGDLKAEYNAENAKSSMDGLAAPVDNKLYTVLGIQPDASPAQIRKAY
YKMAQRYHPDKNPNNSEATAKFQEVSAAYQILSDPVKREEYHRLGEQAAN
DGSLMDPKALFALMFSDFEHIVGDLATSTILSTSLDENGEDAENGGQGAS
SSTQVPQSIEERQKEADRARKRKKQQFQTAREEFLVKLLNRRLEAWMNGE
EEKFVQHAKHEVFAMREEPFGREILKTAGYVYGRRASRFLEKKRGGPWQN
VQSMLENLGDKAHHFKNQVRALEGGVKVLSTQATTEQDESIDEKMRRDTV
NVVGAVWLNSVLDIESTLKHVVAAVLQVNETTTRAEAKKKAAGLIVLSTI
FEQA*
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spliced messenger RNA

>Ggra2968.t1 ID=Ggra2968.t1|Name=Ggra2968.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000858_pilon:721233..722863- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGACGATCACCATCAAAATCAGCAACAACAGCAACCCAATGAAGA
CGACCCTCAGAACCCGCACCGCGAACTACTCATGGAAGCGGCTGCGCAGC
TTCGGGCCGACCAGGTAGCGAGGGAAGAGGCGCGTCCGAAGAACGTAGGA
CAAGGAACCTTAGGTCTTGTCGGAGACTCTCTCGGCGGTGCGGCGATAGG
CGCCGCCGCACTTGTCATGGGTCCCATCCAAGGCTATCGTGAAAACGGAG
CCAAAGGATTGTTGGGCGGCGCTGTGGGCGGATTGGCTGTGGGCGTGGCT
GCGACTGCTTACGGCGTTGGGTCCGGTCTTACCAAGTTCGCACACGGCGC
GAAAGAGACTGCGCGTTCGTTTGACTCTTCTTCCACCGATGAACGCTTGC
GTGTGAGTGAGAGTGATCGACAGCCTGTTGGCGTTTATAAGGCGGAGAGG
AATCGCCTTTATGGCGATTTGAAGGCGGAGTACAATGCAGAGAATGCGAA
GAGTAGCATGGATGGACTCGCTGCTCCGGTTGATAATAAGCTTTATACCG
TATTAGGTATCCAGCCGGATGCTTCTCCGGCTCAGATTCGAAAGGCCTAC
TATAAGATGGCTCAACGTTACCATCCAGATAAGAATCCGAATAATTCGGA
GGCCACTGCCAAGTTTCAAGAAGTTAGCGCCGCGTATCAAATTCTTTCCG
ATCCTGTTAAGCGAGAAGAATATCACCGTCTTGGCGAACAAGCTGCTAAT
GATGGTAGCCTCATGGATCCGAAGGCACTATTTGCGCTCATGTTCTCAGA
CTTTGAACACATTGTCGGAGATCTTGCCACTTCAACTATCCTTTCTACGT
CTCTTGACGAAAACGGGGAAGACGCTGAGAACGGTGGTCAGGGAGCATCT
AGCTCCACGCAAGTCCCTCAGTCTATCGAAGAAAGACAAAAAGAAGCTGA
CAGAGCCCGGAAGCGAAAGAAGCAACAATTCCAGACTGCTCGCGAGGAGT
TTCTGGTTAAGCTTCTTAATCGACGACTTGAGGCGTGGATGAACGGCGAG
GAAGAGAAGTTTGTGCAGCATGCGAAGCATGAAGTTTTTGCGATGAGAGA
AGAGCCGTTTGGCCGGGAAATACTGAAAACGGCTGGATACGTTTACGGTA
GACGGGCGTCGCGCTTTCTGGAGAAGAAGAGGGGCGGACCATGGCAAAAT
GTACAGTCGATGTTGGAGAACCTGGGCGATAAAGCGCATCACTTCAAGAA
CCAGGTGCGGGCTTTGGAGGGAGGTGTTAAGGTACTTTCTACACAGGCAA
CGACTGAGCAGGACGAGTCAATTGACGAGAAGATGAGGCGAGATACAGTT
AACGTGGTTGGTGCGGTGTGGCTGAACTCAGTTCTTGACATCGAATCAAC
TTTGAAACATGTTGTTGCGGCTGTGCTCCAAGTGAACGAAACGACAACCA
GAGCGGAGGCGAAGAAGAAGGCGGCTGGTTTGATCGTGCTGAGTACAATC
TTTGAACAGGCATGA
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protein sequence of Ggra2968.t1

>Ggra2968.t1 ID=Ggra2968.t1|Name=Ggra2968.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=505bp
MTDDHHQNQQQQQPNEDDPQNPHRELLMEAAAQLRADQVAREEARPKNVG
QGTLGLVGDSLGGAAIGAAALVMGPIQGYRENGAKGLLGGAVGGLAVGVA
ATAYGVGSGLTKFAHGAKETARSFDSSSTDERLRVSESDRQPVGVYKAER
NRLYGDLKAEYNAENAKSSMDGLAAPVDNKLYTVLGIQPDASPAQIRKAY
YKMAQRYHPDKNPNNSEATAKFQEVSAAYQILSDPVKREEYHRLGEQAAN
DGSLMDPKALFALMFSDFEHIVGDLATSTILSTSLDENGEDAENGGQGAS
SSTQVPQSIEERQKEADRARKRKKQQFQTAREEFLVKLLNRRLEAWMNGE
EEKFVQHAKHEVFAMREEPFGREILKTAGYVYGRRASRFLEKKRGGPWQN
VQSMLENLGDKAHHFKNQVRALEGGVKVLSTQATTEQDESIDEKMRRDTV
NVVGAVWLNSVLDIESTLKHVVAAVLQVNETTTRAEAKKKAAGLIVLSTI
FEQA*
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mRNA from alignment at tig00000858_pilon:721233..722863-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2968.t1 ID=Ggra2968.t1|Name=Ggra2968.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1631bp|location=Sequence derived from alignment at tig00000858_pilon:721233..722863- (Gracilaria gracilis GNS1m male)
ATGACAGACGATCACCATCAAAATCAGCAACAACAGCAACCCAATGAAGA
CGACCCTCAGAACCCGCACCGCGAACTACTCATGGAAGCGGCTGCGCAGC
TTCGGGCCGACCAGGTAGCGAGGGAAGAGGCGCGTCCGAAGAACGTAGGA
CAAGGAACCTTAGGTCTTGTCGGAGACTCTCTCGGCGGTGCGGCGATAGG
CGCCGCCGCACTTGTCATGGGTCCCATCCAAGGCTATCGTGAAAACGGAG
CCAAAGGATTGTTGGGCGGCGCTGTGGGCGGATTGGCTGTGGGCGTGGCT
GCGACTGCTTACGGCGTTGGGTCCGGTCTTACCAAGTTCGCACACGGCGC
GAAAGAGACTGCGCGTTCGTTTGACTCTTCTTCCACCGATGAACGCTTGC
GTGTGAGTGAGAGTGATCGACAGCCTGTTGGCGTTTATAAGGCGGAGAGG
AATCGCCTTTATGGCGATTTGAAGGCGGAGTACAATGCAGAGAATGCGAA
GAGTAGCATGGATGGACTCGCTGCTCCGGTTGATAATAAGCTTTATACCG
TATTAGGTATCCAGCCGGATGCTTCTCCGGCTCAGATTCGAAAGGCCTAC
TATAAGATGGCTCAACGTTACCATCCAGATAAGAATCCGAATAATTCGGA
GGCCACTGCCAAGTTTCAAGAAGTTAGCGCCGCGTATCAGTAAGTTTGCA
GCCACCGCTTACCACTACTTTTGCGCCTCAACGAGCAAGTTACCATCTCA
AACTGCCCTACTAACATTTCTTTCTCACTAATACCGTACCTTGTGTATGT
CTTAGAATTCTTTCCGATCCTGTTAAGCGAGAAGAATATCACCGTCTTGG
CGAACAAGCTGCTAATGATGGTAGCCTCATGGATCCGAAGGCACTATTTG
CGCTCATGTTCTCAGACTTTGAACACATTGTCGGAGATCTTGCCACTTCA
ACTATCCTTTCTACGTCTCTTGACGAAAACGGGGAAGACGCTGAGAACGG
TGGTCAGGGAGCATCTAGCTCCACGCAAGTCCCTCAGTCTATCGAAGAAA
GACAAAAAGAAGCTGACAGAGCCCGGAAGCGAAAGAAGCAACAATTCCAG
ACTGCTCGCGAGGAGTTTCTGGTTAAGCTTCTTAATCGACGACTTGAGGC
GTGGATGAACGGCGAGGAAGAGAAGTTTGTGCAGCATGCGAAGCATGAAG
TTTTTGCGATGAGAGAAGAGCCGTTTGGCCGGGAAATACTGAAAACGGCT
GGATACGTTTACGGTAGACGGGCGTCGCGCTTTCTGGAGAAGAAGAGGGG
CGGACCATGGCAAAATGTACAGTCGATGTTGGAGAACCTGGGCGATAAAG
CGCATCACTTCAAGAACCAGGTGCGGGCTTTGGAGGGAGGTGTTAAGGTA
CTTTCTACACAGGCAACGACTGAGCAGGACGAGTCAATTGACGAGAAGAT
GAGGCGAGATACAGTTAACGTGGTTGGTGCGGTGTGGCTGAACTCAGTTC
TTGACATCGAATCAACTTTGAAACATGTTGTTGCGGCTGTGCTCCAAGTG
AACGAAACGACAACCAGAGCGGAGGCGAAGAAGAAGGCGGCTGGTTTGAT
CGTGCTGAGTACAATCTTTGAACAGGCATGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:721233..722863-

>Ggra2968.t1 ID=Ggra2968.t1|Name=Ggra2968.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1515bp|location=Sequence derived from alignment at tig00000858_pilon:721233..722863- (Gracilaria gracilis GNS1m male)
ATGACAGACGATCACCATCAAAATCAGCAACAACAGCAACCCAATGAAGA
CGACCCTCAGAACCCGCACCGCGAACTACTCATGGAAGCGGCTGCGCAGC
TTCGGGCCGACCAGGTAGCGAGGGAAGAGGCGCGTCCGAAGAACGTAGGA
CAAGGAACCTTAGGTCTTGTCGGAGACTCTCTCGGCGGTGCGGCGATAGG
CGCCGCCGCACTTGTCATGGGTCCCATCCAAGGCTATCGTGAAAACGGAG
CCAAAGGATTGTTGGGCGGCGCTGTGGGCGGATTGGCTGTGGGCGTGGCT
GCGACTGCTTACGGCGTTGGGTCCGGTCTTACCAAGTTCGCACACGGCGC
GAAAGAGACTGCGCGTTCGTTTGACTCTTCTTCCACCGATGAACGCTTGC
GTGTGAGTGAGAGTGATCGACAGCCTGTTGGCGTTTATAAGGCGGAGAGG
AATCGCCTTTATGGCGATTTGAAGGCGGAGTACAATGCAGAGAATGCGAA
GAGTAGCATGGATGGACTCGCTGCTCCGGTTGATAATAAGCTTTATACCG
TATTAGGTATCCAGCCGGATGCTTCTCCGGCTCAGATTCGAAAGGCCTAC
TATAAGATGGCTCAACGTTACCATCCAGATAAGAATCCGAATAATTCGGA
GGCCACTGCCAAGTTTCAAGAAGTTAGCGCCGCGTATCAAATTCTTTCCG
ATCCTGTTAAGCGAGAAGAATATCACCGTCTTGGCGAACAAGCTGCTAAT
GATGGTAGCCTCATGGATCCGAAGGCACTATTTGCGCTCATGTTCTCAGA
CTTTGAACACATTGTCGGAGATCTTGCCACTTCAACTATCCTTTCTACGT
CTCTTGACGAAAACGGGGAAGACGCTGAGAACGGTGGTCAGGGAGCATCT
AGCTCCACGCAAGTCCCTCAGTCTATCGAAGAAAGACAAAAAGAAGCTGA
CAGAGCCCGGAAGCGAAAGAAGCAACAATTCCAGACTGCTCGCGAGGAGT
TTCTGGTTAAGCTTCTTAATCGACGACTTGAGGCGTGGATGAACGGCGAG
GAAGAGAAGTTTGTGCAGCATGCGAAGCATGAAGTTTTTGCGATGAGAGA
AGAGCCGTTTGGCCGGGAAATACTGAAAACGGCTGGATACGTTTACGGTA
GACGGGCGTCGCGCTTTCTGGAGAAGAAGAGGGGCGGACCATGGCAAAAT
GTACAGTCGATGTTGGAGAACCTGGGCGATAAAGCGCATCACTTCAAGAA
CCAGGTGCGGGCTTTGGAGGGAGGTGTTAAGGTACTTTCTACACAGGCAA
CGACTGAGCAGGACGAGTCAATTGACGAGAAGATGAGGCGAGATACAGTT
AACGTGGTTGGTGCGGTGTGGCTGAACTCAGTTCTTGACATCGAATCAAC
TTTGAAACATGTTGTTGCGGCTGTGCTCCAAGTGAACGAAACGACAACCA
GAGCGGAGGCGAAGAAGAAGGCGGCTGGTTTGATCGTGCTGAGTACAATC
TTTGAACAGGCATGA
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