Ggra2955.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2955.t1
Unique NameGgra2955.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:686442..687230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706000.1
Max annot lvl2759|Eukaryota
Evalue1.49e-60
EggNOG OGs2C0HR@1|root,2SC52@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2955Ggra2955Gracilaria gracilis GNS1m malegenetig00000858_pilon 686442..687230 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2955.t1.stop1Ggra2955.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 686442..686444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2955.t1.CDS1Ggra2955.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 686442..687230 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2955.t1.exon1Ggra2955.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 686442..687230 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2955.t1.start1Ggra2955.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 687228..687230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2955.t1Ggra2955.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 686442..687230 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2955.t1 ID=Ggra2955.t1|Name=Ggra2955.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=263bp
MVAPIVPIGVMLGKADSAFKMVGGSSIVFNAIRSRIFGKVLRAIEYPDGE
LHSIRIYRMNLYRLKANIADSQPPPFPTAFVEPYDIKQVSVFTSPHFTEP
IRTDADVSALPENAWLFWSKDTFEEAPIPARGVKLDGSHIKKASKQKEEP
SVSELTLQDEAISLALKIRKSQQLSRWQFDRIVDLAIDRDAGLLAVARNF
SSNQDEFRVHSTRLLRRRDPRSILVGDGSEAEVTSSEVSNEDSAEDGPKR
TLEPQVELTSRE*
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spliced messenger RNA

>Ggra2955.t1 ID=Ggra2955.t1|Name=Ggra2955.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000858_pilon:686442..687230- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCACCAATTGTTCCAATTGGCGTCATGCTTGGGAAGGCGGACAG
TGCCTTCAAAATGGTAGGAGGTTCATCTATTGTCTTCAACGCCATCAGGT
CACGAATATTTGGCAAGGTCCTTCGCGCAATCGAGTACCCAGACGGTGAA
CTTCATAGCATCAGGATTTATCGCATGAACCTCTATCGACTAAAAGCGAA
CATCGCAGATTCTCAACCACCACCATTTCCAACCGCATTTGTAGAACCGT
ATGATATCAAGCAAGTATCTGTTTTCACCTCACCACACTTTACTGAACCC
ATCAGAACTGATGCCGATGTATCTGCACTGCCTGAGAACGCATGGCTGTT
TTGGAGTAAGGATACTTTTGAGGAAGCGCCCATTCCAGCACGGGGTGTAA
AGCTTGACGGTTCTCACATTAAGAAGGCATCAAAGCAAAAAGAAGAACCT
TCGGTGAGCGAACTAACATTACAAGATGAAGCCATCTCTCTGGCATTAAA
GATAAGGAAATCGCAGCAGCTCTCCAGATGGCAGTTCGATCGAATCGTTG
ACCTTGCTATTGATCGCGATGCTGGTCTCCTGGCGGTAGCGCGCAACTTT
TCTTCCAACCAGGACGAGTTTCGGGTTCATTCTACTCGATTGCTAAGGCG
ACGAGATCCGAGGAGTATTTTGGTAGGTGATGGGTCTGAGGCAGAAGTCA
CTAGCAGTGAGGTTTCAAACGAAGATAGCGCTGAAGATGGACCAAAACGA
ACCCTTGAACCACAAGTGGAATTAACATCTCGGGAATGA
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protein sequence of Ggra2955.t1

>Ggra2955.t1 ID=Ggra2955.t1|Name=Ggra2955.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=263bp
MVAPIVPIGVMLGKADSAFKMVGGSSIVFNAIRSRIFGKVLRAIEYPDGE
LHSIRIYRMNLYRLKANIADSQPPPFPTAFVEPYDIKQVSVFTSPHFTEP
IRTDADVSALPENAWLFWSKDTFEEAPIPARGVKLDGSHIKKASKQKEEP
SVSELTLQDEAISLALKIRKSQQLSRWQFDRIVDLAIDRDAGLLAVARNF
SSNQDEFRVHSTRLLRRRDPRSILVGDGSEAEVTSSEVSNEDSAEDGPKR
TLEPQVELTSRE*
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mRNA from alignment at tig00000858_pilon:686442..687230-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2955.t1 ID=Ggra2955.t1|Name=Ggra2955.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000858_pilon:686442..687230- (Gracilaria gracilis GNS1m male)
ATGGTCGCACCAATTGTTCCAATTGGCGTCATGCTTGGGAAGGCGGACAG
TGCCTTCAAAATGGTAGGAGGTTCATCTATTGTCTTCAACGCCATCAGGT
CACGAATATTTGGCAAGGTCCTTCGCGCAATCGAGTACCCAGACGGTGAA
CTTCATAGCATCAGGATTTATCGCATGAACCTCTATCGACTAAAAGCGAA
CATCGCAGATTCTCAACCACCACCATTTCCAACCGCATTTGTAGAACCGT
ATGATATCAAGCAAGTATCTGTTTTCACCTCACCACACTTTACTGAACCC
ATCAGAACTGATGCCGATGTATCTGCACTGCCTGAGAACGCATGGCTGTT
TTGGAGTAAGGATACTTTTGAGGAAGCGCCCATTCCAGCACGGGGTGTAA
AGCTTGACGGTTCTCACATTAAGAAGGCATCAAAGCAAAAAGAAGAACCT
TCGGTGAGCGAACTAACATTACAAGATGAAGCCATCTCTCTGGCATTAAA
GATAAGGAAATCGCAGCAGCTCTCCAGATGGCAGTTCGATCGAATCGTTG
ACCTTGCTATTGATCGCGATGCTGGTCTCCTGGCGGTAGCGCGCAACTTT
TCTTCCAACCAGGACGAGTTTCGGGTTCATTCTACTCGATTGCTAAGGCG
ACGAGATCCGAGGAGTATTTTGGTAGGTGATGGGTCTGAGGCAGAAGTCA
CTAGCAGTGAGGTTTCAAACGAAGATAGCGCTGAAGATGGACCAAAACGA
ACCCTTGAACCACAAGTGGAATTAACATCTCGGGAATGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:686442..687230-

>Ggra2955.t1 ID=Ggra2955.t1|Name=Ggra2955.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00000858_pilon:686442..687230- (Gracilaria gracilis GNS1m male)
ATGGTCGCACCAATTGTTCCAATTGGCGTCATGCTTGGGAAGGCGGACAG
TGCCTTCAAAATGGTAGGAGGTTCATCTATTGTCTTCAACGCCATCAGGT
CACGAATATTTGGCAAGGTCCTTCGCGCAATCGAGTACCCAGACGGTGAA
CTTCATAGCATCAGGATTTATCGCATGAACCTCTATCGACTAAAAGCGAA
CATCGCAGATTCTCAACCACCACCATTTCCAACCGCATTTGTAGAACCGT
ATGATATCAAGCAAGTATCTGTTTTCACCTCACCACACTTTACTGAACCC
ATCAGAACTGATGCCGATGTATCTGCACTGCCTGAGAACGCATGGCTGTT
TTGGAGTAAGGATACTTTTGAGGAAGCGCCCATTCCAGCACGGGGTGTAA
AGCTTGACGGTTCTCACATTAAGAAGGCATCAAAGCAAAAAGAAGAACCT
TCGGTGAGCGAACTAACATTACAAGATGAAGCCATCTCTCTGGCATTAAA
GATAAGGAAATCGCAGCAGCTCTCCAGATGGCAGTTCGATCGAATCGTTG
ACCTTGCTATTGATCGCGATGCTGGTCTCCTGGCGGTAGCGCGCAACTTT
TCTTCCAACCAGGACGAGTTTCGGGTTCATTCTACTCGATTGCTAAGGCG
ACGAGATCCGAGGAGTATTTTGGTAGGTGATGGGTCTGAGGCAGAAGTCA
CTAGCAGTGAGGTTTCAAACGAAGATAGCGCTGAAGATGGACCAAAACGA
ACCCTTGAACCACAAGTGGAATTAACATCTCGGGAATGA
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