Ggra2952.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2952.t1
Unique NameGgra2952.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:682213..682914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010453215.1
Max annot lvl35493|Streptophyta
Evalue8.09e-24
EggNOG OGsKOG3294@1|root,KOG3294@2759|Eukaryota,37JVV@33090|Viridiplantae,3G98D@35493|Streptophyta,3HZ71@3699|Brassicales
Descriptionfemale pronucleus assembly
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2952Ggra2952Gracilaria gracilis GNS1m malegenetig00000858_pilon 682213..682914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2952.t1Ggra2952.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 682213..682914 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2952.t1.stop1Ggra2952.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 682213..682215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2952.t1.CDS1Ggra2952.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 682213..682687 -
Ggra2952.t1.CDS2Ggra2952.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 682754..682914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2952.t1.exon1Ggra2952.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 682213..682687 -
Ggra2952.t1.exon2Ggra2952.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 682754..682914 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2952.t1.intron1Ggra2952.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 682688..682753 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2952.t1.start1Ggra2952.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 682912..682914 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2952.t1 ID=Ggra2952.t1|Name=Ggra2952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MAVNIPLTGGLQRFPLPFPGEVFLLTRDKTEVSVKHAGHNAKHLKGRLYM
TNMRMVFMVAPAEAQKARFETFEAPFRGIINEAFNQPIFGCNNLTAGVLY
YEGQPFMGNLSMRIDFVRGGVNTFLPVFNNVLLAVRQQMARESQADQYSP
PVHTTTATPQVEEYFPSHNSAFIDPHDPSTLYTTQPVGEETRRQDVPSWH
VSAQGLRSRRH*
back to top

spliced messenger RNA

>Ggra2952.t1 ID=Ggra2952.t1|Name=Ggra2952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000858_pilon:682213..682914- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTCAACATACCTTTAACGGGAGGCCTTCAGCGCTTTCCCCTTCC
TTTCCCTGGAGAAGTCTTTCTCCTGACCAGGGACAAAACAGAAGTTAGCG
TGAAACATGCTGGTCACAATGCGAAGCATTTGAAGGGCCGGCTCTATATG
ACCAACATGCGCATGGTATTTATGGTAGCTCCCGCAGAAGCACAAAAAGC
GCGATTCGAAACGTTTGAAGCCCCCTTCCGTGGCATTATCAACGAAGCTT
TTAACCAACCCATTTTCGGATGCAACAATCTCACTGCAGGCGTACTCTAC
TACGAGGGTCAACCTTTTATGGGCAACCTTTCTATGAGAATTGATTTTGT
ACGCGGAGGCGTCAATACGTTCTTACCAGTGTTCAACAATGTTCTACTTG
CTGTTCGACAACAGATGGCGCGGGAGTCGCAAGCAGATCAGTACAGTCCT
CCCGTCCATACGACAACGGCCACGCCCCAAGTTGAAGAGTACTTCCCAAG
TCATAATTCGGCTTTTATAGATCCTCATGATCCTTCCACGTTATACACAA
CGCAGCCCGTGGGTGAAGAAACTCGAAGGCAGGATGTCCCTTCCTGGCAC
GTAAGTGCTCAAGGTTTACGCTCTCGTCGTCATTAA
back to top

protein sequence of Ggra2952.t1

>Ggra2952.t1 ID=Ggra2952.t1|Name=Ggra2952.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MAVNIPLTGGLQRFPLPFPGEVFLLTRDKTEVSVKHAGHNAKHLKGRLYM
TNMRMVFMVAPAEAQKARFETFEAPFRGIINEAFNQPIFGCNNLTAGVLY
YEGQPFMGNLSMRIDFVRGGVNTFLPVFNNVLLAVRQQMARESQADQYSP
PVHTTTATPQVEEYFPSHNSAFIDPHDPSTLYTTQPVGEETRRQDVPSWH
VSAQGLRSRRH*
back to top

mRNA from alignment at tig00000858_pilon:682213..682914-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2952.t1 ID=Ggra2952.t1|Name=Ggra2952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000858_pilon:682213..682914- (Gracilaria gracilis GNS1m male)
ATGGCGGTCAACATACCTTTAACGGGAGGCCTTCAGCGCTTTCCCCTTCC
TTTCCCTGGAGAAGTCTTTCTCCTGACCAGGGACAAAACAGAAGTTAGCG
TGAAACATGCTGGTCACAATGCGAAGCATTTGAAGGGCCGGCTCTATATG
ACCAACATGCGGTATGATATCTAACAACATTTCCCCCTGGTACACTATGT
TTTTAAACGAATCTAACGCACCCACAGCATGGTATTTATGGTAGCTCCCG
CAGAAGCACAAAAAGCGCGATTCGAAACGTTTGAAGCCCCCTTCCGTGGC
ATTATCAACGAAGCTTTTAACCAACCCATTTTCGGATGCAACAATCTCAC
TGCAGGCGTACTCTACTACGAGGGTCAACCTTTTATGGGCAACCTTTCTA
TGAGAATTGATTTTGTACGCGGAGGCGTCAATACGTTCTTACCAGTGTTC
AACAATGTTCTACTTGCTGTTCGACAACAGATGGCGCGGGAGTCGCAAGC
AGATCAGTACAGTCCTCCCGTCCATACGACAACGGCCACGCCCCAAGTTG
AAGAGTACTTCCCAAGTCATAATTCGGCTTTTATAGATCCTCATGATCCT
TCCACGTTATACACAACGCAGCCCGTGGGTGAAGAAACTCGAAGGCAGGA
TGTCCCTTCCTGGCACGTAAGTGCTCAAGGTTTACGCTCTCGTCGTCATT
AA
back to top

Coding sequence (CDS) from alignment at tig00000858_pilon:682213..682914-

>Ggra2952.t1 ID=Ggra2952.t1|Name=Ggra2952.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000858_pilon:682213..682914- (Gracilaria gracilis GNS1m male)
ATGGCGGTCAACATACCTTTAACGGGAGGCCTTCAGCGCTTTCCCCTTCC
TTTCCCTGGAGAAGTCTTTCTCCTGACCAGGGACAAAACAGAAGTTAGCG
TGAAACATGCTGGTCACAATGCGAAGCATTTGAAGGGCCGGCTCTATATG
ACCAACATGCGCATGGTATTTATGGTAGCTCCCGCAGAAGCACAAAAAGC
GCGATTCGAAACGTTTGAAGCCCCCTTCCGTGGCATTATCAACGAAGCTT
TTAACCAACCCATTTTCGGATGCAACAATCTCACTGCAGGCGTACTCTAC
TACGAGGGTCAACCTTTTATGGGCAACCTTTCTATGAGAATTGATTTTGT
ACGCGGAGGCGTCAATACGTTCTTACCAGTGTTCAACAATGTTCTACTTG
CTGTTCGACAACAGATGGCGCGGGAGTCGCAAGCAGATCAGTACAGTCCT
CCCGTCCATACGACAACGGCCACGCCCCAAGTTGAAGAGTACTTCCCAAG
TCATAATTCGGCTTTTATAGATCCTCATGATCCTTCCACGTTATACACAA
CGCAGCCCGTGGGTGAAGAAACTCGAAGGCAGGATGTCCCTTCCTGGCAC
GTAAGTGCTCAAGGTTTACGCTCTCGTCGTCATTAA
back to top