Ggra2951.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2951.t1
Unique NameGgra2951.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:679673..680530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2951Ggra2951Gracilaria gracilis GNS1m malegenetig00000858_pilon 679673..680530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2951.t1Ggra2951.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 679673..680530 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2951.t1.start1Ggra2951.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 679673..679675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2951.t1.CDS1Ggra2951.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 679673..680005 +
Ggra2951.t1.CDS2Ggra2951.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 680087..680530 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2951.t1.exon1Ggra2951.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 679673..680005 +
Ggra2951.t1.exon2Ggra2951.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 680087..680530 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2951.t1.intron1Ggra2951.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 680006..680086 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2951.t1.stop1Ggra2951.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 680528..680530 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2951.t1 ID=Ggra2951.t1|Name=Ggra2951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=259bp
MERREPPAYLPLAQHLRSLKPRKPSLQDMAYGSHEASLHDLKPTDIRDLQ
ECSICMDNGNLVLGSKIPSSPEVDLARMLVKLVSFHGIKSMVTFPCVSET
LWIFTFVEIMKKIHPSFMHYCGIESDEVVVDMMKFYNQSDLGETEFIVYS
PNARGSLPQVDLLFTWKGLERFGFDTLLALFNHAQKTRIRYTIVKNKPGV
ENAVMVENAGETYSVVRSRNRALNFRGFPFGFGEAKRVIPLPGSQLLFYN
TTELRERW*
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spliced messenger RNA

>Ggra2951.t1 ID=Ggra2951.t1|Name=Ggra2951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000858_pilon:679673..680530+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGAAGGGAGCCCCCAGCTTACTTACCACTTGCTCAACACCTGAG
GTCACTGAAGCCACGGAAGCCGTCCCTTCAGGACATGGCGTATGGGTCTC
ATGAAGCATCTCTCCACGACTTGAAACCTACGGATATCAGAGACTTACAA
GAATGCAGTATATGCATGGATAACGGCAATCTGGTTCTGGGTTCTAAAAT
TCCCTCCTCACCTGAAGTAGACCTCGCACGTATGTTGGTCAAACTGGTTT
CTTTTCATGGTATCAAATCAATGGTTACGTTTCCGTGTGTCTCTGAGACA
TTGTGGATTTTCACCTTTGTTGAAATCATGAAGAAAATACATCCAAGTTT
TATGCACTATTGCGGAATAGAGTCAGATGAAGTTGTGGTAGATATGATGA
AGTTTTACAATCAGAGCGATTTAGGCGAAACTGAGTTCATTGTGTACTCG
CCAAACGCTCGTGGATCACTACCACAAGTTGATCTTCTCTTTACATGGAA
AGGATTGGAACGTTTTGGCTTTGACACACTTTTAGCTCTTTTCAATCACG
CTCAAAAGACCCGAATTCGATATACAATTGTCAAGAACAAACCGGGTGTT
GAGAACGCTGTCATGGTTGAAAATGCCGGAGAAACCTATTCCGTTGTGAG
ATCTCGTAATCGAGCCCTCAACTTTCGAGGCTTTCCTTTCGGATTTGGCG
AGGCCAAGCGAGTCATTCCGCTTCCTGGCTCACAGCTCTTGTTCTACAAT
ACTACAGAGTTGCGTGAAAGATGGTGA
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protein sequence of Ggra2951.t1

>Ggra2951.t1 ID=Ggra2951.t1|Name=Ggra2951.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=259bp
MERREPPAYLPLAQHLRSLKPRKPSLQDMAYGSHEASLHDLKPTDIRDLQ
ECSICMDNGNLVLGSKIPSSPEVDLARMLVKLVSFHGIKSMVTFPCVSET
LWIFTFVEIMKKIHPSFMHYCGIESDEVVVDMMKFYNQSDLGETEFIVYS
PNARGSLPQVDLLFTWKGLERFGFDTLLALFNHAQKTRIRYTIVKNKPGV
ENAVMVENAGETYSVVRSRNRALNFRGFPFGFGEAKRVIPLPGSQLLFYN
TTELRERW*
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mRNA from alignment at tig00000858_pilon:679673..680530+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2951.t1 ID=Ggra2951.t1|Name=Ggra2951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000858_pilon:679673..680530+ (Gracilaria gracilis GNS1m male)
ATGGAAAGAAGGGAGCCCCCAGCTTACTTACCACTTGCTCAACACCTGAG
GTCACTGAAGCCACGGAAGCCGTCCCTTCAGGACATGGCGTATGGGTCTC
ATGAAGCATCTCTCCACGACTTGAAACCTACGGATATCAGAGACTTACAA
GAATGCAGTATATGCATGGATAACGGCAATCTGGTTCTGGGTTCTAAAAT
TCCCTCCTCACCTGAAGTAGACCTCGCACGTATGTTGGTCAAACTGGTTT
CTTTTCATGGTATCAAATCAATGGTTACGTTTCCGTGTGTCTCTGAGACA
TTGTGGATTTTCACCTTTGTTGAAATCATGAAGGTAAGCCGAAGAAAGAG
AGCCCGAAGAGCAACAGAGCGCACTTCTCGATCTAACTGTTTTCGATCCC
ACTCTTTTATGTAGAAAATACATCCAAGTTTTATGCACTATTGCGGAATA
GAGTCAGATGAAGTTGTGGTAGATATGATGAAGTTTTACAATCAGAGCGA
TTTAGGCGAAACTGAGTTCATTGTGTACTCGCCAAACGCTCGTGGATCAC
TACCACAAGTTGATCTTCTCTTTACATGGAAAGGATTGGAACGTTTTGGC
TTTGACACACTTTTAGCTCTTTTCAATCACGCTCAAAAGACCCGAATTCG
ATATACAATTGTCAAGAACAAACCGGGTGTTGAGAACGCTGTCATGGTTG
AAAATGCCGGAGAAACCTATTCCGTTGTGAGATCTCGTAATCGAGCCCTC
AACTTTCGAGGCTTTCCTTTCGGATTTGGCGAGGCCAAGCGAGTCATTCC
GCTTCCTGGCTCACAGCTCTTGTTCTACAATACTACAGAGTTGCGTGAAA
GATGGTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:679673..680530+

>Ggra2951.t1 ID=Ggra2951.t1|Name=Ggra2951.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00000858_pilon:679673..680530+ (Gracilaria gracilis GNS1m male)
ATGGAAAGAAGGGAGCCCCCAGCTTACTTACCACTTGCTCAACACCTGAG
GTCACTGAAGCCACGGAAGCCGTCCCTTCAGGACATGGCGTATGGGTCTC
ATGAAGCATCTCTCCACGACTTGAAACCTACGGATATCAGAGACTTACAA
GAATGCAGTATATGCATGGATAACGGCAATCTGGTTCTGGGTTCTAAAAT
TCCCTCCTCACCTGAAGTAGACCTCGCACGTATGTTGGTCAAACTGGTTT
CTTTTCATGGTATCAAATCAATGGTTACGTTTCCGTGTGTCTCTGAGACA
TTGTGGATTTTCACCTTTGTTGAAATCATGAAGAAAATACATCCAAGTTT
TATGCACTATTGCGGAATAGAGTCAGATGAAGTTGTGGTAGATATGATGA
AGTTTTACAATCAGAGCGATTTAGGCGAAACTGAGTTCATTGTGTACTCG
CCAAACGCTCGTGGATCACTACCACAAGTTGATCTTCTCTTTACATGGAA
AGGATTGGAACGTTTTGGCTTTGACACACTTTTAGCTCTTTTCAATCACG
CTCAAAAGACCCGAATTCGATATACAATTGTCAAGAACAAACCGGGTGTT
GAGAACGCTGTCATGGTTGAAAATGCCGGAGAAACCTATTCCGTTGTGAG
ATCTCGTAATCGAGCCCTCAACTTTCGAGGCTTTCCTTTCGGATTTGGCG
AGGCCAAGCGAGTCATTCCGCTTCCTGGCTCACAGCTCTTGTTCTACAAT
ACTACAGAGTTGCGTGAAAGATGGTGA
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