Ggra2949.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2949.t1
Unique NameGgra2949.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:673427..674002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002501406.1
PFAMsRad60-SLD
Max annot lvl3041|Chlorophyta
KEGG koko:K12160
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG ModuleM00427
Evalue1.3e-17
EggNOG OGsCOG5227@1|root,KOG1769@2759|Eukaryota,37V8A@33090|Viridiplantae,34IMX@3041|Chlorophyta
DescriptionSmall ubiquitin-related modifier
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2949Ggra2949Gracilaria gracilis GNS1m malegenetig00000858_pilon 673427..674002 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2949.t1.stop1Ggra2949.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 673427..673429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2949.t1.CDS1Ggra2949.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 673427..674002 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2949.t1.exon1Ggra2949.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 673427..674002 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2949.t1.start1Ggra2949.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 674000..674002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2949.t1Ggra2949.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 673427..674002 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2949.t1 ID=Ggra2949.t1|Name=Ggra2949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=192bp
MQNPVPDVDSSPVADRQADSLHFQAFNDSSDAPKGEGPPLSPAPLVDTNP
TQDAPLPPPETVFQESSLSPEPERRKIKRSSSASPPLAQAPPPKSPPPLP
SDRVTLTVRDKENNEFTFQVKRTTPFRKVFEAFSSKMKEPPTTFRFLYDG
KRISPSDTAISLDISNGDSIDAMVEAQGGQCQPCSQHFHAF*
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spliced messenger RNA

>Ggra2949.t1 ID=Ggra2949.t1|Name=Ggra2949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000858_pilon:673427..674002- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAACCCTGTGCCCGACGTAGATTCGTCACCCGTTGCCGACCGACA
AGCAGATTCCTTGCACTTCCAAGCCTTCAACGATTCATCTGACGCTCCGA
AAGGAGAAGGTCCGCCCTTGAGCCCAGCCCCGCTAGTGGATACTAACCCC
ACGCAAGATGCTCCATTACCTCCGCCTGAAACGGTCTTTCAAGAATCTTC
GCTCTCGCCGGAGCCGGAACGTCGGAAGATAAAGCGTTCTTCTTCCGCTT
CACCGCCTCTGGCACAGGCCCCACCGCCCAAATCGCCTCCCCCACTCCCA
TCTGATCGAGTCACGTTGACAGTGCGTGACAAAGAAAACAACGAGTTTAC
CTTCCAGGTGAAGCGTACCACTCCGTTCCGCAAAGTATTCGAAGCTTTTT
CCTCCAAGATGAAGGAGCCGCCAACCACCTTCCGTTTCTTGTACGATGGA
AAACGAATCTCTCCGTCGGACACTGCTATTTCCCTCGACATCTCCAATGG
CGATTCTATTGATGCCATGGTAGAGGCACAAGGAGGACAATGTCAACCAT
GTTCTCAACATTTTCATGCTTTCTGA
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protein sequence of Ggra2949.t1

>Ggra2949.t1 ID=Ggra2949.t1|Name=Ggra2949.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MQNPVPDVDSSPVADRQADSLHFQAFNDSSDAPKGEGPPLSPAPLVDTNP
TQDAPLPPPETVFQESSLSPEPERRKIKRSSSASPPLAQAPPPKSPPPLP
SDRVTLTVRDKENNEFTFQVKRTTPFRKVFEAFSSKMKEPPTTFRFLYDG
KRISPSDTAISLDISNGDSIDAMVEAQGGQCQPCSQHFHAF*
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mRNA from alignment at tig00000858_pilon:673427..674002-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2949.t1 ID=Ggra2949.t1|Name=Ggra2949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000858_pilon:673427..674002- (Gracilaria gracilis GNS1m male)
ATGCAGAACCCTGTGCCCGACGTAGATTCGTCACCCGTTGCCGACCGACA
AGCAGATTCCTTGCACTTCCAAGCCTTCAACGATTCATCTGACGCTCCGA
AAGGAGAAGGTCCGCCCTTGAGCCCAGCCCCGCTAGTGGATACTAACCCC
ACGCAAGATGCTCCATTACCTCCGCCTGAAACGGTCTTTCAAGAATCTTC
GCTCTCGCCGGAGCCGGAACGTCGGAAGATAAAGCGTTCTTCTTCCGCTT
CACCGCCTCTGGCACAGGCCCCACCGCCCAAATCGCCTCCCCCACTCCCA
TCTGATCGAGTCACGTTGACAGTGCGTGACAAAGAAAACAACGAGTTTAC
CTTCCAGGTGAAGCGTACCACTCCGTTCCGCAAAGTATTCGAAGCTTTTT
CCTCCAAGATGAAGGAGCCGCCAACCACCTTCCGTTTCTTGTACGATGGA
AAACGAATCTCTCCGTCGGACACTGCTATTTCCCTCGACATCTCCAATGG
CGATTCTATTGATGCCATGGTAGAGGCACAAGGAGGACAATGTCAACCAT
GTTCTCAACATTTTCATGCTTTCTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:673427..674002-

>Ggra2949.t1 ID=Ggra2949.t1|Name=Ggra2949.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00000858_pilon:673427..674002- (Gracilaria gracilis GNS1m male)
ATGCAGAACCCTGTGCCCGACGTAGATTCGTCACCCGTTGCCGACCGACA
AGCAGATTCCTTGCACTTCCAAGCCTTCAACGATTCATCTGACGCTCCGA
AAGGAGAAGGTCCGCCCTTGAGCCCAGCCCCGCTAGTGGATACTAACCCC
ACGCAAGATGCTCCATTACCTCCGCCTGAAACGGTCTTTCAAGAATCTTC
GCTCTCGCCGGAGCCGGAACGTCGGAAGATAAAGCGTTCTTCTTCCGCTT
CACCGCCTCTGGCACAGGCCCCACCGCCCAAATCGCCTCCCCCACTCCCA
TCTGATCGAGTCACGTTGACAGTGCGTGACAAAGAAAACAACGAGTTTAC
CTTCCAGGTGAAGCGTACCACTCCGTTCCGCAAAGTATTCGAAGCTTTTT
CCTCCAAGATGAAGGAGCCGCCAACCACCTTCCGTTTCTTGTACGATGGA
AAACGAATCTCTCCGTCGGACACTGCTATTTCCCTCGACATCTCCAATGG
CGATTCTATTGATGCCATGGTAGAGGCACAAGGAGGACAATGTCAACCAT
GTTCTCAACATTTTCATGCTTTCTGA
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