Ggra2943.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2943.t2
Unique NameGgra2943.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:567330..568332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1499684.CCNP01000021_gene2772
Max annot lvl186801|Clostridia
Evalue2.06e-26
EggNOG OGs28NU7@1|root,2ZBSM@2|Bacteria,1V2N8@1239|Firmicutes,24G4F@186801|Clostridia,36IFV@31979|Clostridiaceae
DescriptionNOG32933 non supervised orthologous group
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2943Ggra2943Gracilaria gracilis GNS1m malegenetig00000858_pilon 567330..568332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2943.t2Ggra2943.t2Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 567330..568332 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2943.t2.stop1Ggra2943.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 567330..567332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2943.t2.CDS1Ggra2943.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 567330..567937 -
Ggra2943.t2.CDS2Ggra2943.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 568015..568050 -
Ggra2943.t2.CDS3Ggra2943.t2.CDS3Gracilaria gracilis GNS1m maleCDStig00000858_pilon 568197..568332 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2943.t2.exon1Ggra2943.t2.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 567330..567937 -
Ggra2943.t2.exon2Ggra2943.t2.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 568015..568050 -
Ggra2943.t2.exon3Ggra2943.t2.exon3Gracilaria gracilis GNS1m maleexontig00000858_pilon 568197..568332 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2943.t2.intron1Ggra2943.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 567938..568014 -
Ggra2943.t2.intron2Ggra2943.t2.intron2Gracilaria gracilis GNS1m maleintrontig00000858_pilon 568051..568196 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2943.t2.start1Ggra2943.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 568330..568332 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2943.t2 ID=Ggra2943.t2|Name=Ggra2943.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=260bp
MGPIGPSNDFTVSTITLDLVSRSSCGDVQEKAPVKHSNFGLEVQKGLRGF
ILPRIRGNTEAPRKMSDQLELIKKYMIGRFDNASQVEDERRTGKQVTPFA
IHVNTPLEDYMYDKPEEFDTSKTFHVLEETYKWHPGSRNAMVTPLLLRFE
LTEDGLVSLTSLTRPDDLDPSSVRHDNSMLRFSYHELQQSKTFPISPVYD
FDEEGLEFRLDVTVSLTENTKVRLIETLSENTLHVHERVWKDGNLVFGFY
ETPIIYKRK*
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spliced messenger RNA

>Ggra2943.t2 ID=Ggra2943.t2|Name=Ggra2943.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000858_pilon:567330..568332- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCCGATTGGGCCGAGTAATGATTTTACCGTTTCGACGATAACTCT
GGATCTTGTTAGCCGTTCTTCGTGCGGTGATGTGCAAGAGAAAGCCCCTG
TGAAGCATTCGAACTTTGGTCTCGAGGTCCAGAAGGGTTTGCGGGGCTTC
ATTCTACCAAGAATAAGAGGAAATACCGAAGCTCCAAGGAAAATGTCAGA
TCAGCTCGAGCTCATCAAAAAGTATATGATAGGCCGCTTTGACAATGCGA
GCCAAGTTGAAGACGAAAGGCGTACCGGGAAACAGGTTACACCGTTCGCC
ATCCATGTGAACACACCCTTAGAAGACTACATGTACGATAAACCGGAAGA
ATTCGATACCTCGAAGACCTTTCACGTCTTGGAAGAGACATACAAATGGC
ACCCGGGTTCCAGAAACGCTATGGTGACGCCTTTGTTGCTTCGGTTTGAA
CTAACTGAAGACGGCCTTGTCAGCTTAACATCCTTGACCCGTCCTGATGA
TCTGGACCCTTCCTCTGTTAGACATGATAACTCAATGCTGCGTTTTAGCT
ACCACGAGCTACAACAATCAAAAACGTTCCCCATCAGCCCTGTATACGAC
TTCGACGAGGAAGGTCTCGAGTTCAGACTTGATGTAACTGTTTCTTTGAC
TGAAAATACGAAAGTTAGGCTTATCGAGACCTTGTCGGAAAACACTCTTC
ATGTTCACGAACGAGTTTGGAAAGATGGGAACCTTGTTTTCGGATTCTAT
GAAACCCCTATCATTTATAAGCGCAAATAA
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protein sequence of Ggra2943.t2

>Ggra2943.t2 ID=Ggra2943.t2|Name=Ggra2943.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=260bp
MGPIGPSNDFTVSTITLDLVSRSSCGDVQEKAPVKHSNFGLEVQKGLRGF
ILPRIRGNTEAPRKMSDQLELIKKYMIGRFDNASQVEDERRTGKQVTPFA
IHVNTPLEDYMYDKPEEFDTSKTFHVLEETYKWHPGSRNAMVTPLLLRFE
LTEDGLVSLTSLTRPDDLDPSSVRHDNSMLRFSYHELQQSKTFPISPVYD
FDEEGLEFRLDVTVSLTENTKVRLIETLSENTLHVHERVWKDGNLVFGFY
ETPIIYKRK*
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mRNA from alignment at tig00000858_pilon:567330..568332-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2943.t2 ID=Ggra2943.t2|Name=Ggra2943.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1003bp|location=Sequence derived from alignment at tig00000858_pilon:567330..568332- (Gracilaria gracilis GNS1m male)
ATGGGGCCGATTGGGCCGAGTAATGATTTTACCGTTTCGACGATAACTCT
GGATCTTGTTAGCCGTTCTTCGTGCGGTGATGTGCAAGAGAAAGCCCCTG
TGAAGCATTCGAACTTTGGTCTCGAGGTCCAGAAGGGTCTGAAAAATGTC
AAACGTCGTTTCTCTGCTTCCCAAAAAAGGCCATAGCGAGTAATTAAAGT
GGACGTCTATTATTATCGCAACCCACTCGTTTCAACTCCATTAACACATC
ACGTTGTTTGTGATGTTCCTTGAACTCCCAAGGTTTGCGGGGCTTCATTC
TACCAAGAATAAGAGGAAGTACGTTGTACCAGTTGCACGCCGTGTGTTGG
AAGGAAACTAGGTTTTGACACCGTCATTTGGCTGTCTAGCGACAGATACC
GAAGCTCCAAGGAAAATGTCAGATCAGCTCGAGCTCATCAAAAAGTATAT
GATAGGCCGCTTTGACAATGCGAGCCAAGTTGAAGACGAAAGGCGTACCG
GGAAACAGGTTACACCGTTCGCCATCCATGTGAACACACCCTTAGAAGAC
TACATGTACGATAAACCGGAAGAATTCGATACCTCGAAGACCTTTCACGT
CTTGGAAGAGACATACAAATGGCACCCGGGTTCCAGAAACGCTATGGTGA
CGCCTTTGTTGCTTCGGTTTGAACTAACTGAAGACGGCCTTGTCAGCTTA
ACATCCTTGACCCGTCCTGATGATCTGGACCCTTCCTCTGTTAGACATGA
TAACTCAATGCTGCGTTTTAGCTACCACGAGCTACAACAATCAAAAACGT
TCCCCATCAGCCCTGTATACGACTTCGACGAGGAAGGTCTCGAGTTCAGA
CTTGATGTAACTGTTTCTTTGACTGAAAATACGAAAGTTAGGCTTATCGA
GACCTTGTCGGAAAACACTCTTCATGTTCACGAACGAGTTTGGAAAGATG
GGAACCTTGTTTTCGGATTCTATGAAACCCCTATCATTTATAAGCGCAAA
TAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:567330..568332-

>Ggra2943.t2 ID=Ggra2943.t2|Name=Ggra2943.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00000858_pilon:567330..568332- (Gracilaria gracilis GNS1m male)
ATGGGGCCGATTGGGCCGAGTAATGATTTTACCGTTTCGACGATAACTCT
GGATCTTGTTAGCCGTTCTTCGTGCGGTGATGTGCAAGAGAAAGCCCCTG
TGAAGCATTCGAACTTTGGTCTCGAGGTCCAGAAGGGTTTGCGGGGCTTC
ATTCTACCAAGAATAAGAGGAAATACCGAAGCTCCAAGGAAAATGTCAGA
TCAGCTCGAGCTCATCAAAAAGTATATGATAGGCCGCTTTGACAATGCGA
GCCAAGTTGAAGACGAAAGGCGTACCGGGAAACAGGTTACACCGTTCGCC
ATCCATGTGAACACACCCTTAGAAGACTACATGTACGATAAACCGGAAGA
ATTCGATACCTCGAAGACCTTTCACGTCTTGGAAGAGACATACAAATGGC
ACCCGGGTTCCAGAAACGCTATGGTGACGCCTTTGTTGCTTCGGTTTGAA
CTAACTGAAGACGGCCTTGTCAGCTTAACATCCTTGACCCGTCCTGATGA
TCTGGACCCTTCCTCTGTTAGACATGATAACTCAATGCTGCGTTTTAGCT
ACCACGAGCTACAACAATCAAAAACGTTCCCCATCAGCCCTGTATACGAC
TTCGACGAGGAAGGTCTCGAGTTCAGACTTGATGTAACTGTTTCTTTGAC
TGAAAATACGAAAGTTAGGCTTATCGAGACCTTGTCGGAAAACACTCTTC
ATGTTCACGAACGAGTTTGGAAAGATGGGAACCTTGTTTTCGGATTCTAT
GAAACCCCTATCATTTATAAGCGCAAATAA
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