Ggra2942.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2942.t1
Unique Name	Ggra2942.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	707

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:564631..566751 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S39_285V6.2
PFAMs	Tcf25
Max annot lvl	35493\|Streptophyta
Evalue	7.47e-51
EggNOG OGs	KOG2422@1\|root,KOG2422@2759\|Eukaryota,37M5E@33090\|Viridiplantae,3G8G6@35493\|Streptophyta
Description	transcription factor
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2942	Ggra2942	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 564631..566751 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2942.t1.start1	Ggra2942.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 564631..564633 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2942.t1.CDS1	Ggra2942.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 564631..566751 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2942.t1.exon1	Ggra2942.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 564631..566751 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2942.t1.stop1	Ggra2942.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 566749..566751 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2942.t1	Ggra2942.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 564631..566751 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:564631..566751+
coding sequence from alignment at tig00000858_pilon:564631..566751+

mRNA sequence

>Ggra2942.t1 ID=Ggra2942.t1|Name=Ggra2942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=707bp
MSRRAIRRYDEALRAKKNTSEEKEGSDSDTALDSLNPISAPSPGFFSLLE
DSEDGTEGEEPSEDKDSKANVEESAARNDSTDDNHEVEKGIGVSPNGAEE
PPVEENKKASKKSKKKRKKGRGKKKSANVLDREQDPDWIALNQASDITST
STKKPTGYIPNSLFRKEDSDEVRKEAREIMKAVERMAISSVNDVANPEMP
IDEENNPLHVEVKFLNASSELKRLFGSRAVEAERRNERSADAQVLRRRRP
PPPRAHLRRQLTLVTPRDTWFGYAPGLTMVLDSEAMEDDTSGLRYFRYKH
EPAYKSLQDEYRVVVENLDPNLLVQFMSMHPFHVDGLLQLAELYRQTGEM
DRAGEQIERSIYVLQTSWNVTFKPYDGMCRLRFDVIENRSLYVALFRYSQ
LLTRRGLHRTALEVSKLILNFDPSNDPMGVLLLADSYALLSEEYGWVKDM
DNFYKHVPLKYFPNFAASVAIAIEGELQMSSGASSRSKYKKTGSTSVDEE
SGKDTAEVGQDAENVLINALLTFPMLLKPIVLAIRDDPGVWAEYTLYDED
WYSAGIDSCDVLLRISRIYAERSKLLWNSMTHKDMLAKCARIAGELDRAA
AVKANPSRENNADASETFGRVMRCRALRKEAAEWFEESGFYRTLQIGDFT
DRGNLPGELLAGDPVQQVIGAQPQREITLTQGALEFLQSLLPWREAQDAQ
PGPEEG*

spliced messenger RNA

>Ggra2942.t1 ID=Ggra2942.t1|Name=Ggra2942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2121bp|location=Sequence derived from alignment at tig00000858_pilon:564631..566751+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGGAGAGCTATAAGAAGATATGATGAAGCGCTTCGTGCAAAGAA
GAACACCTCTGAGGAGAAAGAAGGGTCTGATTCCGATACGGCCTTGGACT
CATTAAATCCGATATCAGCACCAAGCCCCGGCTTCTTTTCCTTACTTGAA
GATTCCGAAGATGGTACGGAGGGCGAAGAGCCGTCCGAGGACAAAGATTC
AAAAGCAAATGTTGAAGAAAGCGCAGCTCGCAATGACTCAACGGATGATA
ACCACGAAGTCGAGAAAGGAATAGGCGTTTCTCCCAATGGTGCCGAGGAA
CCTCCTGTCGAGGAGAACAAAAAGGCCTCGAAGAAGTCGAAAAAGAAAAG
AAAGAAGGGCCGAGGGAAAAAGAAGAGTGCAAACGTTTTGGACCGGGAAC
AAGATCCAGACTGGATTGCTTTGAACCAAGCGTCTGACATAACATCTACT
TCAACGAAAAAACCTACGGGCTATATCCCTAACTCCCTTTTCAGGAAAGA
AGACAGTGATGAAGTCCGTAAAGAAGCGAGGGAAATTATGAAGGCTGTGG
AAAGAATGGCAATATCTAGTGTTAATGATGTTGCAAATCCTGAGATGCCA
ATTGATGAAGAGAACAATCCGCTTCATGTGGAAGTGAAATTCCTTAATGC
GTCATCAGAGCTCAAGAGGCTATTCGGTTCCAGGGCTGTAGAAGCTGAAC
GTCGAAATGAGCGAAGTGCGGACGCACAAGTCCTTCGTCGTCGAAGACCT
CCGCCTCCACGAGCTCATCTGCGTAGACAACTCACTCTAGTAACGCCACG
AGATACGTGGTTTGGATACGCGCCTGGATTGACCATGGTTTTGGATTCGG
AAGCGATGGAAGATGATACATCTGGTCTGCGATATTTTCGTTACAAGCAT
GAACCAGCTTACAAGAGTCTACAAGATGAATATCGGGTCGTGGTCGAAAA
CCTTGACCCCAATTTGCTTGTGCAGTTTATGAGTATGCATCCTTTTCACG
TCGATGGGCTTTTGCAGCTGGCAGAGCTTTACCGTCAGACGGGGGAAATG
GATCGGGCTGGCGAACAAATTGAACGAAGTATATATGTGCTTCAGACGTC
TTGGAATGTTACATTCAAACCATACGACGGAATGTGCAGACTCAGATTTG
ACGTGATTGAGAATCGCTCATTGTATGTCGCGTTATTCCGTTATTCTCAG
CTTCTCACGAGACGGGGACTGCATCGAACTGCACTCGAAGTAAGCAAGCT
TATTTTGAACTTTGACCCAAGTAATGATCCCATGGGAGTCCTTTTGTTAG
CAGACTCTTATGCCCTGCTTTCCGAGGAGTACGGATGGGTAAAGGACATG
GACAATTTCTACAAGCACGTTCCGTTGAAGTATTTCCCAAACTTTGCCGC
TAGCGTCGCAATCGCTATTGAAGGCGAATTGCAGATGTCTTCCGGTGCTT
CATCTCGCTCAAAGTATAAGAAAACAGGATCAACATCAGTGGACGAAGAA
TCGGGGAAAGATACCGCAGAAGTCGGCCAGGATGCAGAAAATGTGTTGAT
CAATGCTCTTCTGACATTTCCGATGCTCTTGAAGCCCATCGTCTTGGCAA
TTCGAGATGACCCGGGAGTGTGGGCAGAATACACGCTCTATGACGAAGAT
TGGTATAGCGCAGGAATTGATAGTTGTGATGTTCTGCTTCGGATAAGTCG
AATCTACGCAGAAAGGAGCAAACTGCTTTGGAATTCTATGACCCATAAGG
ATATGCTCGCTAAATGTGCTAGAATTGCAGGAGAATTAGATAGGGCAGCA
GCTGTCAAAGCTAATCCAAGCAGGGAAAACAATGCAGATGCTTCGGAAAC
GTTTGGACGAGTGATGAGATGTAGAGCGCTACGCAAAGAAGCAGCAGAGT
GGTTCGAGGAGAGTGGATTTTATCGCACGCTTCAAATAGGAGATTTCACT
GATAGGGGCAACTTACCGGGTGAGCTGCTTGCGGGAGATCCTGTTCAGCA
GGTTATCGGCGCGCAGCCACAACGGGAAATAACGCTGACACAGGGAGCTC
TGGAGTTCCTACAGAGTTTGCTTCCATGGAGAGAAGCACAAGATGCCCAG
CCAGGACCAGAAGAAGGCTGA

protein sequence of Ggra2942.t1

>Ggra2942.t1 ID=Ggra2942.t1|Name=Ggra2942.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=707bp
MSRRAIRRYDEALRAKKNTSEEKEGSDSDTALDSLNPISAPSPGFFSLLE
DSEDGTEGEEPSEDKDSKANVEESAARNDSTDDNHEVEKGIGVSPNGAEE
PPVEENKKASKKSKKKRKKGRGKKKSANVLDREQDPDWIALNQASDITST
STKKPTGYIPNSLFRKEDSDEVRKEAREIMKAVERMAISSVNDVANPEMP
IDEENNPLHVEVKFLNASSELKRLFGSRAVEAERRNERSADAQVLRRRRP
PPPRAHLRRQLTLVTPRDTWFGYAPGLTMVLDSEAMEDDTSGLRYFRYKH
EPAYKSLQDEYRVVVENLDPNLLVQFMSMHPFHVDGLLQLAELYRQTGEM
DRAGEQIERSIYVLQTSWNVTFKPYDGMCRLRFDVIENRSLYVALFRYSQ
LLTRRGLHRTALEVSKLILNFDPSNDPMGVLLLADSYALLSEEYGWVKDM
DNFYKHVPLKYFPNFAASVAIAIEGELQMSSGASSRSKYKKTGSTSVDEE
SGKDTAEVGQDAENVLINALLTFPMLLKPIVLAIRDDPGVWAEYTLYDED
WYSAGIDSCDVLLRISRIYAERSKLLWNSMTHKDMLAKCARIAGELDRAA
AVKANPSRENNADASETFGRVMRCRALRKEAAEWFEESGFYRTLQIGDFT
DRGNLPGELLAGDPVQQVIGAQPQREITLTQGALEFLQSLLPWREAQDAQ
PGPEEG*

mRNA from alignment at tig00000858_pilon:564631..566751+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2942.t1 ID=Ggra2942.t1|Name=Ggra2942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2121bp|location=Sequence derived from alignment at tig00000858_pilon:564631..566751+ (Gracilaria gracilis GNS1m male)
ATGAGCAGGAGAGCTATAAGAAGATATGATGAAGCGCTTCGTGCAAAGAA
GAACACCTCTGAGGAGAAAGAAGGGTCTGATTCCGATACGGCCTTGGACT
CATTAAATCCGATATCAGCACCAAGCCCCGGCTTCTTTTCCTTACTTGAA
GATTCCGAAGATGGTACGGAGGGCGAAGAGCCGTCCGAGGACAAAGATTC
AAAAGCAAATGTTGAAGAAAGCGCAGCTCGCAATGACTCAACGGATGATA
ACCACGAAGTCGAGAAAGGAATAGGCGTTTCTCCCAATGGTGCCGAGGAA
CCTCCTGTCGAGGAGAACAAAAAGGCCTCGAAGAAGTCGAAAAAGAAAAG
AAAGAAGGGCCGAGGGAAAAAGAAGAGTGCAAACGTTTTGGACCGGGAAC
AAGATCCAGACTGGATTGCTTTGAACCAAGCGTCTGACATAACATCTACT
TCAACGAAAAAACCTACGGGCTATATCCCTAACTCCCTTTTCAGGAAAGA
AGACAGTGATGAAGTCCGTAAAGAAGCGAGGGAAATTATGAAGGCTGTGG
AAAGAATGGCAATATCTAGTGTTAATGATGTTGCAAATCCTGAGATGCCA
ATTGATGAAGAGAACAATCCGCTTCATGTGGAAGTGAAATTCCTTAATGC
GTCATCAGAGCTCAAGAGGCTATTCGGTTCCAGGGCTGTAGAAGCTGAAC
GTCGAAATGAGCGAAGTGCGGACGCACAAGTCCTTCGTCGTCGAAGACCT
CCGCCTCCACGAGCTCATCTGCGTAGACAACTCACTCTAGTAACGCCACG
AGATACGTGGTTTGGATACGCGCCTGGATTGACCATGGTTTTGGATTCGG
AAGCGATGGAAGATGATACATCTGGTCTGCGATATTTTCGTTACAAGCAT
GAACCAGCTTACAAGAGTCTACAAGATGAATATCGGGTCGTGGTCGAAAA
CCTTGACCCCAATTTGCTTGTGCAGTTTATGAGTATGCATCCTTTTCACG
TCGATGGGCTTTTGCAGCTGGCAGAGCTTTACCGTCAGACGGGGGAAATG
GATCGGGCTGGCGAACAAATTGAACGAAGTATATATGTGCTTCAGACGTC
TTGGAATGTTACATTCAAACCATACGACGGAATGTGCAGACTCAGATTTG
ACGTGATTGAGAATCGCTCATTGTATGTCGCGTTATTCCGTTATTCTCAG
CTTCTCACGAGACGGGGACTGCATCGAACTGCACTCGAAGTAAGCAAGCT
TATTTTGAACTTTGACCCAAGTAATGATCCCATGGGAGTCCTTTTGTTAG
CAGACTCTTATGCCCTGCTTTCCGAGGAGTACGGATGGGTAAAGGACATG
GACAATTTCTACAAGCACGTTCCGTTGAAGTATTTCCCAAACTTTGCCGC
TAGCGTCGCAATCGCTATTGAAGGCGAATTGCAGATGTCTTCCGGTGCTT
CATCTCGCTCAAAGTATAAGAAAACAGGATCAACATCAGTGGACGAAGAA
TCGGGGAAAGATACCGCAGAAGTCGGCCAGGATGCAGAAAATGTGTTGAT
CAATGCTCTTCTGACATTTCCGATGCTCTTGAAGCCCATCGTCTTGGCAA
TTCGAGATGACCCGGGAGTGTGGGCAGAATACACGCTCTATGACGAAGAT
TGGTATAGCGCAGGAATTGATAGTTGTGATGTTCTGCTTCGGATAAGTCG
AATCTACGCAGAAAGGAGCAAACTGCTTTGGAATTCTATGACCCATAAGG
ATATGCTCGCTAAATGTGCTAGAATTGCAGGAGAATTAGATAGGGCAGCA
GCTGTCAAAGCTAATCCAAGCAGGGAAAACAATGCAGATGCTTCGGAAAC
GTTTGGACGAGTGATGAGATGTAGAGCGCTACGCAAAGAAGCAGCAGAGT
GGTTCGAGGAGAGTGGATTTTATCGCACGCTTCAAATAGGAGATTTCACT
GATAGGGGCAACTTACCGGGTGAGCTGCTTGCGGGAGATCCTGTTCAGCA
GGTTATCGGCGCGCAGCCACAACGGGAAATAACGCTGACACAGGGAGCTC
TGGAGTTCCTACAGAGTTTGCTTCCATGGAGAGAAGCACAAGATGCCCAG
CCAGGACCAGAAGAAGGCTGA

Coding sequence (CDS) from alignment at tig00000858_pilon:564631..566751+

>Ggra2942.t1 ID=Ggra2942.t1|Name=Ggra2942.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2121bp|location=Sequence derived from alignment at tig00000858_pilon:564631..566751+ (Gracilaria gracilis GNS1m male)
ATGAGCAGGAGAGCTATAAGAAGATATGATGAAGCGCTTCGTGCAAAGAA
GAACACCTCTGAGGAGAAAGAAGGGTCTGATTCCGATACGGCCTTGGACT
CATTAAATCCGATATCAGCACCAAGCCCCGGCTTCTTTTCCTTACTTGAA
GATTCCGAAGATGGTACGGAGGGCGAAGAGCCGTCCGAGGACAAAGATTC
AAAAGCAAATGTTGAAGAAAGCGCAGCTCGCAATGACTCAACGGATGATA
ACCACGAAGTCGAGAAAGGAATAGGCGTTTCTCCCAATGGTGCCGAGGAA
CCTCCTGTCGAGGAGAACAAAAAGGCCTCGAAGAAGTCGAAAAAGAAAAG
AAAGAAGGGCCGAGGGAAAAAGAAGAGTGCAAACGTTTTGGACCGGGAAC
AAGATCCAGACTGGATTGCTTTGAACCAAGCGTCTGACATAACATCTACT
TCAACGAAAAAACCTACGGGCTATATCCCTAACTCCCTTTTCAGGAAAGA
AGACAGTGATGAAGTCCGTAAAGAAGCGAGGGAAATTATGAAGGCTGTGG
AAAGAATGGCAATATCTAGTGTTAATGATGTTGCAAATCCTGAGATGCCA
ATTGATGAAGAGAACAATCCGCTTCATGTGGAAGTGAAATTCCTTAATGC
GTCATCAGAGCTCAAGAGGCTATTCGGTTCCAGGGCTGTAGAAGCTGAAC
GTCGAAATGAGCGAAGTGCGGACGCACAAGTCCTTCGTCGTCGAAGACCT
CCGCCTCCACGAGCTCATCTGCGTAGACAACTCACTCTAGTAACGCCACG
AGATACGTGGTTTGGATACGCGCCTGGATTGACCATGGTTTTGGATTCGG
AAGCGATGGAAGATGATACATCTGGTCTGCGATATTTTCGTTACAAGCAT
GAACCAGCTTACAAGAGTCTACAAGATGAATATCGGGTCGTGGTCGAAAA
CCTTGACCCCAATTTGCTTGTGCAGTTTATGAGTATGCATCCTTTTCACG
TCGATGGGCTTTTGCAGCTGGCAGAGCTTTACCGTCAGACGGGGGAAATG
GATCGGGCTGGCGAACAAATTGAACGAAGTATATATGTGCTTCAGACGTC
TTGGAATGTTACATTCAAACCATACGACGGAATGTGCAGACTCAGATTTG
ACGTGATTGAGAATCGCTCATTGTATGTCGCGTTATTCCGTTATTCTCAG
CTTCTCACGAGACGGGGACTGCATCGAACTGCACTCGAAGTAAGCAAGCT
TATTTTGAACTTTGACCCAAGTAATGATCCCATGGGAGTCCTTTTGTTAG
CAGACTCTTATGCCCTGCTTTCCGAGGAGTACGGATGGGTAAAGGACATG
GACAATTTCTACAAGCACGTTCCGTTGAAGTATTTCCCAAACTTTGCCGC
TAGCGTCGCAATCGCTATTGAAGGCGAATTGCAGATGTCTTCCGGTGCTT
CATCTCGCTCAAAGTATAAGAAAACAGGATCAACATCAGTGGACGAAGAA
TCGGGGAAAGATACCGCAGAAGTCGGCCAGGATGCAGAAAATGTGTTGAT
CAATGCTCTTCTGACATTTCCGATGCTCTTGAAGCCCATCGTCTTGGCAA
TTCGAGATGACCCGGGAGTGTGGGCAGAATACACGCTCTATGACGAAGAT
TGGTATAGCGCAGGAATTGATAGTTGTGATGTTCTGCTTCGGATAAGTCG
AATCTACGCAGAAAGGAGCAAACTGCTTTGGAATTCTATGACCCATAAGG
ATATGCTCGCTAAATGTGCTAGAATTGCAGGAGAATTAGATAGGGCAGCA
GCTGTCAAAGCTAATCCAAGCAGGGAAAACAATGCAGATGCTTCGGAAAC
GTTTGGACGAGTGATGAGATGTAGAGCGCTACGCAAAGAAGCAGCAGAGT
GGTTCGAGGAGAGTGGATTTTATCGCACGCTTCAAATAGGAGATTTCACT
GATAGGGGCAACTTACCGGGTGAGCTGCTTGCGGGAGATCCTGTTCAGCA
GGTTATCGGCGCGCAGCCACAACGGGAAATAACGCTGACACAGGGAGCTC
TGGAGTTCCTACAGAGTTTGCTTCCATGGAGAGAAGCACAAGATGCCCAG
CCAGGACCAGAAGAAGGCTGA