Ggra2939.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2939.t1
Unique Name	Ggra2939.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	796

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:555553..557940 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT006CT
PFAMs	Band_3_cyto,HCO3_cotransp
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13862
KEGG TC	2.A.31.4
Evalue	7.97e-146
EggNOG OGs	KOG1172@1\|root,KOG1172@2759\|Eukaryota
Description	inorganic anion exchanger activity
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2939	Ggra2939	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 555553..557940 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2939.t1.start1	Ggra2939.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 555553..555555 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2939.t1.CDS1	Ggra2939.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 555553..557940 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2939.t1.exon1	Ggra2939.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 555553..557940 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2939.t1.stop1	Ggra2939.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 557938..557940 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2939.t1	Ggra2939.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 555553..557940 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:555553..557940+
coding sequence from alignment at tig00000858_pilon:555553..557940+

mRNA sequence

>Ggra2939.t1 ID=Ggra2939.t1|Name=Ggra2939.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=796bp
MPPQAHSPDAAATPSSTNPSLSASNLRAPAVLCEVEPLRHKSVSEEIRGH
KDLERLAETAPVILQLRANTPEAVVSTLLDALVQQQQLPAAALAQASAAL
FGRESLLHKRRSADNREDLYDGHITSSALPLTAQDESTQSSSNDQVTAHW
HKNILGPGYIIPFARMSALDDTDKCVVAIARLSSDCNLGVVNDSLIRFVI
VVLGPMREVKETKSPFELAHTLSSLFQDDDFYSEAKAVQQPGHLRQAILA
YLSKEKERPLRDDQMITQADKVFARTGRFAGGLVDDIKRRYNPTMYKSDW
LDGVNDVRSWLKYLSTTVWLFFAIIMPTIAFGALDNENTEGALGVIETIV
SQAFAGLAFAIFAGQPLTIVMTTAPLTVFIDVLFRWCQSLEIPFLPFYAW
TGIWTAVILLILVVTDACYIMKFCGHFTEEIFATLIAALFISEYVKPLIK
SADHDPTDVFLLTFLLATGTFLIATILLNFRRSFLLRPIIRQLLSDFGVS
IAIVTMTGVRQAFKGIDVAPLRVPERIGIVTTSGRNWLVPLFDIEVQYIF
LALVSGALLATLFFLDQNISSMLVNKVENKLRKGPGYNLDLVIVSIIVII
QSILGMPWTHAALPHSPLHARQLADVVEYEQHGRRYERVIKSRETRITGT
ATHILIGLSILAKDALGLIPLSVLYGFFLFLGIGTLDGNALWDRILLIFT
QPEKYPPNHYVRRVKIKRVHAYTIIQVGLLVLLWFVKSNFYIKDSVFNTG
LLFPFIIALFIPIRLYILPRFFTKVELHALSKEEDENVSDTGITV*

spliced messenger RNA

>Ggra2939.t1 ID=Ggra2939.t1|Name=Ggra2939.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2388bp|location=Sequence derived from alignment at tig00000858_pilon:555553..557940+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGCAAGCCCACTCGCCGGACGCAGCTGCCACGCCGTCCTCTAC
CAATCCCTCGCTGTCTGCGTCCAATCTGCGAGCGCCCGCCGTTCTGTGCG
AGGTGGAGCCGCTCCGTCACAAGAGCGTGTCTGAGGAGATTCGCGGCCAC
AAGGACCTTGAGCGCCTCGCTGAGACTGCTCCTGTCATACTGCAGCTGCG
CGCCAATACACCAGAGGCTGTCGTCTCCACGCTGCTGGATGCGCTCGTGC
AGCAGCAACAGCTGCCAGCTGCCGCCCTCGCTCAGGCCAGTGCTGCGCTG
TTTGGAAGGGAGTCTTTGTTGCATAAACGGCGCTCTGCTGACAATCGTGA
GGACCTTTATGATGGCCATATCACTTCTTCTGCGCTTCCACTCACGGCTC
AAGATGAGTCCACGCAGTCTTCTTCTAACGACCAAGTCACTGCTCATTGG
CACAAGAACATCCTTGGTCCAGGCTACATCATTCCGTTTGCGAGGATGAG
CGCCCTCGATGATACTGACAAATGTGTCGTGGCTATCGCTCGCCTCAGCA
GTGACTGCAATCTAGGAGTGGTAAATGACTCCCTCATTCGTTTTGTCATT
GTTGTGCTGGGACCCATGCGCGAGGTCAAGGAGACCAAATCTCCATTCGA
ACTTGCGCATACCTTGTCCTCCCTGTTTCAGGATGACGATTTCTATTCGG
AGGCAAAGGCTGTGCAACAGCCAGGCCACCTTCGACAGGCCATTCTCGCC
TATCTATCCAAGGAGAAAGAACGCCCTTTGCGCGATGACCAAATGATCAC
ACAAGCGGACAAGGTCTTCGCACGTACCGGAAGATTCGCTGGCGGCCTTG
TTGATGACATAAAGCGACGATACAACCCGACCATGTACAAGTCAGATTGG
TTGGATGGTGTGAATGATGTTCGAAGCTGGCTCAAGTATTTGTCTACAAC
CGTGTGGCTCTTTTTCGCAATCATCATGCCCACTATAGCCTTCGGGGCCT
TGGATAATGAGAACACAGAGGGGGCATTAGGCGTCATTGAAACCATTGTT
TCCCAGGCATTTGCCGGCCTAGCCTTCGCAATTTTTGCTGGGCAACCGCT
CACCATCGTAATGACAACTGCGCCTTTAACTGTGTTCATCGATGTATTGT
TTCGGTGGTGCCAGAGTCTTGAAATTCCGTTTCTGCCCTTTTATGCATGG
ACTGGAATCTGGACCGCTGTCATATTGCTGATTCTCGTTGTTACCGATGC
GTGTTACATCATGAAGTTCTGTGGTCATTTCACGGAGGAAATCTTTGCCA
CGCTCATTGCTGCGCTTTTCATAAGCGAGTATGTGAAGCCTCTGATCAAG
AGTGCTGACCATGATCCAACCGATGTATTTCTGCTCACATTTCTACTTGC
CACCGGGACTTTCCTGATTGCGACTATTCTGCTCAATTTCCGACGAAGCT
TTCTGCTCAGACCAATCATCCGACAGCTTCTCAGCGATTTTGGTGTGTCT
ATAGCTATAGTCACTATGACTGGTGTTCGACAAGCGTTCAAGGGTATTGA
TGTTGCACCGTTGCGAGTTCCAGAAAGGATAGGTATTGTGACCACCAGTG
GCAGGAATTGGTTGGTTCCCTTGTTTGACATCGAAGTTCAATACATATTC
CTGGCTCTCGTAAGCGGTGCTCTGCTTGCTACACTCTTCTTCCTTGACCA
AAATATCTCGTCAATGCTTGTCAACAAGGTAGAAAACAAACTGCGGAAAG
GACCCGGGTACAATCTTGATCTTGTCATAGTGAGCATAATTGTCATCATT
CAATCAATCCTGGGCATGCCATGGACCCATGCTGCCCTCCCTCATTCTCC
ACTGCATGCCAGACAGCTCGCCGACGTTGTCGAATATGAGCAACATGGTC
GCCGGTACGAGAGGGTCATAAAGTCACGAGAAACGCGAATTACTGGGACA
GCTACTCACATCTTGATCGGGCTGAGTATTCTGGCCAAAGATGCGCTGGG
ACTGATTCCCTTGTCTGTTTTGTACGGATTCTTCCTTTTCCTTGGCATTG
GCACGCTTGATGGAAATGCCCTGTGGGACAGGATCTTGCTAATATTCACG
CAGCCTGAGAAGTACCCTCCCAATCACTATGTGCGAAGGGTGAAGATCAA
GAGAGTGCATGCATATACTATCATTCAAGTAGGGTTGCTCGTTCTTCTTT
GGTTCGTGAAATCCAACTTCTATATCAAGGACTCGGTATTCAACACCGGT
CTCTTGTTCCCGTTTATTATCGCATTGTTCATTCCAATTCGTTTGTATAT
TCTCCCGAGATTCTTTACGAAGGTCGAACTACACGCATTAAGCAAAGAAG
AGGATGAGAACGTGTCCGACACTGGTATAACTGTGTAG

protein sequence of Ggra2939.t1

>Ggra2939.t1 ID=Ggra2939.t1|Name=Ggra2939.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=796bp
MPPQAHSPDAAATPSSTNPSLSASNLRAPAVLCEVEPLRHKSVSEEIRGH
KDLERLAETAPVILQLRANTPEAVVSTLLDALVQQQQLPAAALAQASAAL
FGRESLLHKRRSADNREDLYDGHITSSALPLTAQDESTQSSSNDQVTAHW
HKNILGPGYIIPFARMSALDDTDKCVVAIARLSSDCNLGVVNDSLIRFVI
VVLGPMREVKETKSPFELAHTLSSLFQDDDFYSEAKAVQQPGHLRQAILA
YLSKEKERPLRDDQMITQADKVFARTGRFAGGLVDDIKRRYNPTMYKSDW
LDGVNDVRSWLKYLSTTVWLFFAIIMPTIAFGALDNENTEGALGVIETIV
SQAFAGLAFAIFAGQPLTIVMTTAPLTVFIDVLFRWCQSLEIPFLPFYAW
TGIWTAVILLILVVTDACYIMKFCGHFTEEIFATLIAALFISEYVKPLIK
SADHDPTDVFLLTFLLATGTFLIATILLNFRRSFLLRPIIRQLLSDFGVS
IAIVTMTGVRQAFKGIDVAPLRVPERIGIVTTSGRNWLVPLFDIEVQYIF
LALVSGALLATLFFLDQNISSMLVNKVENKLRKGPGYNLDLVIVSIIVII
QSILGMPWTHAALPHSPLHARQLADVVEYEQHGRRYERVIKSRETRITGT
ATHILIGLSILAKDALGLIPLSVLYGFFLFLGIGTLDGNALWDRILLIFT
QPEKYPPNHYVRRVKIKRVHAYTIIQVGLLVLLWFVKSNFYIKDSVFNTG
LLFPFIIALFIPIRLYILPRFFTKVELHALSKEEDENVSDTGITV*

mRNA from alignment at tig00000858_pilon:555553..557940+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2939.t1 ID=Ggra2939.t1|Name=Ggra2939.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2388bp|location=Sequence derived from alignment at tig00000858_pilon:555553..557940+ (Gracilaria gracilis GNS1m male)
ATGCCGCCGCAAGCCCACTCGCCGGACGCAGCTGCCACGCCGTCCTCTAC
CAATCCCTCGCTGTCTGCGTCCAATCTGCGAGCGCCCGCCGTTCTGTGCG
AGGTGGAGCCGCTCCGTCACAAGAGCGTGTCTGAGGAGATTCGCGGCCAC
AAGGACCTTGAGCGCCTCGCTGAGACTGCTCCTGTCATACTGCAGCTGCG
CGCCAATACACCAGAGGCTGTCGTCTCCACGCTGCTGGATGCGCTCGTGC
AGCAGCAACAGCTGCCAGCTGCCGCCCTCGCTCAGGCCAGTGCTGCGCTG
TTTGGAAGGGAGTCTTTGTTGCATAAACGGCGCTCTGCTGACAATCGTGA
GGACCTTTATGATGGCCATATCACTTCTTCTGCGCTTCCACTCACGGCTC
AAGATGAGTCCACGCAGTCTTCTTCTAACGACCAAGTCACTGCTCATTGG
CACAAGAACATCCTTGGTCCAGGCTACATCATTCCGTTTGCGAGGATGAG
CGCCCTCGATGATACTGACAAATGTGTCGTGGCTATCGCTCGCCTCAGCA
GTGACTGCAATCTAGGAGTGGTAAATGACTCCCTCATTCGTTTTGTCATT
GTTGTGCTGGGACCCATGCGCGAGGTCAAGGAGACCAAATCTCCATTCGA
ACTTGCGCATACCTTGTCCTCCCTGTTTCAGGATGACGATTTCTATTCGG
AGGCAAAGGCTGTGCAACAGCCAGGCCACCTTCGACAGGCCATTCTCGCC
TATCTATCCAAGGAGAAAGAACGCCCTTTGCGCGATGACCAAATGATCAC
ACAAGCGGACAAGGTCTTCGCACGTACCGGAAGATTCGCTGGCGGCCTTG
TTGATGACATAAAGCGACGATACAACCCGACCATGTACAAGTCAGATTGG
TTGGATGGTGTGAATGATGTTCGAAGCTGGCTCAAGTATTTGTCTACAAC
CGTGTGGCTCTTTTTCGCAATCATCATGCCCACTATAGCCTTCGGGGCCT
TGGATAATGAGAACACAGAGGGGGCATTAGGCGTCATTGAAACCATTGTT
TCCCAGGCATTTGCCGGCCTAGCCTTCGCAATTTTTGCTGGGCAACCGCT
CACCATCGTAATGACAACTGCGCCTTTAACTGTGTTCATCGATGTATTGT
TTCGGTGGTGCCAGAGTCTTGAAATTCCGTTTCTGCCCTTTTATGCATGG
ACTGGAATCTGGACCGCTGTCATATTGCTGATTCTCGTTGTTACCGATGC
GTGTTACATCATGAAGTTCTGTGGTCATTTCACGGAGGAAATCTTTGCCA
CGCTCATTGCTGCGCTTTTCATAAGCGAGTATGTGAAGCCTCTGATCAAG
AGTGCTGACCATGATCCAACCGATGTATTTCTGCTCACATTTCTACTTGC
CACCGGGACTTTCCTGATTGCGACTATTCTGCTCAATTTCCGACGAAGCT
TTCTGCTCAGACCAATCATCCGACAGCTTCTCAGCGATTTTGGTGTGTCT
ATAGCTATAGTCACTATGACTGGTGTTCGACAAGCGTTCAAGGGTATTGA
TGTTGCACCGTTGCGAGTTCCAGAAAGGATAGGTATTGTGACCACCAGTG
GCAGGAATTGGTTGGTTCCCTTGTTTGACATCGAAGTTCAATACATATTC
CTGGCTCTCGTAAGCGGTGCTCTGCTTGCTACACTCTTCTTCCTTGACCA
AAATATCTCGTCAATGCTTGTCAACAAGGTAGAAAACAAACTGCGGAAAG
GACCCGGGTACAATCTTGATCTTGTCATAGTGAGCATAATTGTCATCATT
CAATCAATCCTGGGCATGCCATGGACCCATGCTGCCCTCCCTCATTCTCC
ACTGCATGCCAGACAGCTCGCCGACGTTGTCGAATATGAGCAACATGGTC
GCCGGTACGAGAGGGTCATAAAGTCACGAGAAACGCGAATTACTGGGACA
GCTACTCACATCTTGATCGGGCTGAGTATTCTGGCCAAAGATGCGCTGGG
ACTGATTCCCTTGTCTGTTTTGTACGGATTCTTCCTTTTCCTTGGCATTG
GCACGCTTGATGGAAATGCCCTGTGGGACAGGATCTTGCTAATATTCACG
CAGCCTGAGAAGTACCCTCCCAATCACTATGTGCGAAGGGTGAAGATCAA
GAGAGTGCATGCATATACTATCATTCAAGTAGGGTTGCTCGTTCTTCTTT
GGTTCGTGAAATCCAACTTCTATATCAAGGACTCGGTATTCAACACCGGT
CTCTTGTTCCCGTTTATTATCGCATTGTTCATTCCAATTCGTTTGTATAT
TCTCCCGAGATTCTTTACGAAGGTCGAACTACACGCATTAAGCAAAGAAG
AGGATGAGAACGTGTCCGACACTGGTATAACTGTGTAG

Coding sequence (CDS) from alignment at tig00000858_pilon:555553..557940+

>Ggra2939.t1 ID=Ggra2939.t1|Name=Ggra2939.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2388bp|location=Sequence derived from alignment at tig00000858_pilon:555553..557940+ (Gracilaria gracilis GNS1m male)
ATGCCGCCGCAAGCCCACTCGCCGGACGCAGCTGCCACGCCGTCCTCTAC
CAATCCCTCGCTGTCTGCGTCCAATCTGCGAGCGCCCGCCGTTCTGTGCG
AGGTGGAGCCGCTCCGTCACAAGAGCGTGTCTGAGGAGATTCGCGGCCAC
AAGGACCTTGAGCGCCTCGCTGAGACTGCTCCTGTCATACTGCAGCTGCG
CGCCAATACACCAGAGGCTGTCGTCTCCACGCTGCTGGATGCGCTCGTGC
AGCAGCAACAGCTGCCAGCTGCCGCCCTCGCTCAGGCCAGTGCTGCGCTG
TTTGGAAGGGAGTCTTTGTTGCATAAACGGCGCTCTGCTGACAATCGTGA
GGACCTTTATGATGGCCATATCACTTCTTCTGCGCTTCCACTCACGGCTC
AAGATGAGTCCACGCAGTCTTCTTCTAACGACCAAGTCACTGCTCATTGG
CACAAGAACATCCTTGGTCCAGGCTACATCATTCCGTTTGCGAGGATGAG
CGCCCTCGATGATACTGACAAATGTGTCGTGGCTATCGCTCGCCTCAGCA
GTGACTGCAATCTAGGAGTGGTAAATGACTCCCTCATTCGTTTTGTCATT
GTTGTGCTGGGACCCATGCGCGAGGTCAAGGAGACCAAATCTCCATTCGA
ACTTGCGCATACCTTGTCCTCCCTGTTTCAGGATGACGATTTCTATTCGG
AGGCAAAGGCTGTGCAACAGCCAGGCCACCTTCGACAGGCCATTCTCGCC
TATCTATCCAAGGAGAAAGAACGCCCTTTGCGCGATGACCAAATGATCAC
ACAAGCGGACAAGGTCTTCGCACGTACCGGAAGATTCGCTGGCGGCCTTG
TTGATGACATAAAGCGACGATACAACCCGACCATGTACAAGTCAGATTGG
TTGGATGGTGTGAATGATGTTCGAAGCTGGCTCAAGTATTTGTCTACAAC
CGTGTGGCTCTTTTTCGCAATCATCATGCCCACTATAGCCTTCGGGGCCT
TGGATAATGAGAACACAGAGGGGGCATTAGGCGTCATTGAAACCATTGTT
TCCCAGGCATTTGCCGGCCTAGCCTTCGCAATTTTTGCTGGGCAACCGCT
CACCATCGTAATGACAACTGCGCCTTTAACTGTGTTCATCGATGTATTGT
TTCGGTGGTGCCAGAGTCTTGAAATTCCGTTTCTGCCCTTTTATGCATGG
ACTGGAATCTGGACCGCTGTCATATTGCTGATTCTCGTTGTTACCGATGC
GTGTTACATCATGAAGTTCTGTGGTCATTTCACGGAGGAAATCTTTGCCA
CGCTCATTGCTGCGCTTTTCATAAGCGAGTATGTGAAGCCTCTGATCAAG
AGTGCTGACCATGATCCAACCGATGTATTTCTGCTCACATTTCTACTTGC
CACCGGGACTTTCCTGATTGCGACTATTCTGCTCAATTTCCGACGAAGCT
TTCTGCTCAGACCAATCATCCGACAGCTTCTCAGCGATTTTGGTGTGTCT
ATAGCTATAGTCACTATGACTGGTGTTCGACAAGCGTTCAAGGGTATTGA
TGTTGCACCGTTGCGAGTTCCAGAAAGGATAGGTATTGTGACCACCAGTG
GCAGGAATTGGTTGGTTCCCTTGTTTGACATCGAAGTTCAATACATATTC
CTGGCTCTCGTAAGCGGTGCTCTGCTTGCTACACTCTTCTTCCTTGACCA
AAATATCTCGTCAATGCTTGTCAACAAGGTAGAAAACAAACTGCGGAAAG
GACCCGGGTACAATCTTGATCTTGTCATAGTGAGCATAATTGTCATCATT
CAATCAATCCTGGGCATGCCATGGACCCATGCTGCCCTCCCTCATTCTCC
ACTGCATGCCAGACAGCTCGCCGACGTTGTCGAATATGAGCAACATGGTC
GCCGGTACGAGAGGGTCATAAAGTCACGAGAAACGCGAATTACTGGGACA
GCTACTCACATCTTGATCGGGCTGAGTATTCTGGCCAAAGATGCGCTGGG
ACTGATTCCCTTGTCTGTTTTGTACGGATTCTTCCTTTTCCTTGGCATTG
GCACGCTTGATGGAAATGCCCTGTGGGACAGGATCTTGCTAATATTCACG
CAGCCTGAGAAGTACCCTCCCAATCACTATGTGCGAAGGGTGAAGATCAA
GAGAGTGCATGCATATACTATCATTCAAGTAGGGTTGCTCGTTCTTCTTT
GGTTCGTGAAATCCAACTTCTATATCAAGGACTCGGTATTCAACACCGGT
CTCTTGTTCCCGTTTATTATCGCATTGTTCATTCCAATTCGTTTGTATAT
TCTCCCGAGATTCTTTACGAAGGTCGAACTACACGCATTAAGCAAAGAAG
AGGATGAGAACGTGTCCGACACTGGTATAACTGTGTAG