Ggra2938.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2938.t2
Unique NameGgra2938.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:553850..554749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S155_76V6.1
PFAMsLOR
Max annot lvl35493|Streptophyta
Evalue2.48e-10
EggNOG OGs28N8X@1|root,2QUU9@2759|Eukaryota,37QSW@33090|Viridiplantae,3GFT9@35493|Streptophyta
DescriptionLURP-one-related
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2938Ggra2938Gracilaria gracilis GNS1m malegenetig00000858_pilon 553850..554749 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2938.t2.stop1Ggra2938.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 553850..553852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2938.t2.CDS1Ggra2938.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 553850..554749 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2938.t2.exon1Ggra2938.t2.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 553850..554749 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2938.t2.start1Ggra2938.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 554747..554749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2938.t2Ggra2938.t2Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 553850..554749 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2938.t2 ID=Ggra2938.t2|Name=Ggra2938.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MHGMHPYMLQPFHMPYALPPAAMPYGMMPYMQPYAQYPSPYAQPYAPPPP
YYAPPYAPHAYAPPPYASHPPMPQMPLHKPPEPAPAPAHPHPQPAPSSAH
FSQQLLNAARVDMYGLPVVPGDVPVTYPQVFRLEEKLLGAIRGAFHARDQ
QGTLRYKVDSKLASLHERKVLKDVNGQVLLKLREQRLTVRNRITFFSPTN
IAILTLQKTTAVQFGTKRVHGFAGPDTSGTPALLITGDSDNTHFRVFSNQ
NQELCSIRRQKQTWKNMLTDQDSYDVTINYGSPALMCFIAVALDEIYED*
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spliced messenger RNA

>Ggra2938.t2 ID=Ggra2938.t2|Name=Ggra2938.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000858_pilon:553850..554749- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGGCATGCACCCGTACATGCTGCAGCCGTTCCACATGCCGTACGC
GCTGCCGCCGGCCGCCATGCCGTACGGCATGATGCCGTACATGCAGCCGT
ACGCACAGTACCCGTCGCCGTACGCGCAGCCGTATGCGCCGCCGCCGCCC
TACTACGCGCCACCTTACGCGCCGCACGCCTATGCGCCGCCGCCGTACGC
GTCGCACCCGCCCATGCCGCAAATGCCGCTTCACAAACCGCCCGAGCCCG
CGCCCGCGCCCGCGCATCCGCACCCCCAGCCAGCGCCCTCCAGCGCCCAT
TTCTCGCAGCAGCTTCTCAACGCCGCGCGCGTCGATATGTACGGGCTGCC
CGTTGTGCCGGGCGATGTGCCCGTCACGTATCCGCAGGTGTTCCGTCTGG
AGGAGAAGTTGCTCGGTGCAATTCGTGGCGCCTTTCACGCGCGCGACCAG
CAGGGAACCTTGCGCTACAAAGTGGATAGCAAGTTGGCCTCCTTGCATGA
ACGAAAGGTTCTCAAGGATGTCAATGGTCAGGTTTTGCTCAAGCTGCGCG
AGCAACGTCTTACCGTACGCAATCGAATTACTTTCTTCTCGCCTACCAAT
ATAGCCATACTTACCTTGCAGAAGACCACCGCCGTTCAGTTTGGAACCAA
GAGAGTTCATGGTTTCGCAGGCCCTGATACCTCTGGCACGCCTGCACTGC
TAATCACTGGCGATTCAGATAACACCCACTTTAGAGTGTTCAGTAACCAA
AACCAAGAGCTTTGCAGCATTCGACGCCAAAAGCAGACGTGGAAGAATAT
GCTCACCGACCAGGACTCCTACGATGTCACCATCAATTACGGTTCTCCTG
CTTTGATGTGCTTCATTGCCGTTGCGCTAGATGAGATATATGAAGATTAG
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protein sequence of Ggra2938.t2

>Ggra2938.t2 ID=Ggra2938.t2|Name=Ggra2938.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MHGMHPYMLQPFHMPYALPPAAMPYGMMPYMQPYAQYPSPYAQPYAPPPP
YYAPPYAPHAYAPPPYASHPPMPQMPLHKPPEPAPAPAHPHPQPAPSSAH
FSQQLLNAARVDMYGLPVVPGDVPVTYPQVFRLEEKLLGAIRGAFHARDQ
QGTLRYKVDSKLASLHERKVLKDVNGQVLLKLREQRLTVRNRITFFSPTN
IAILTLQKTTAVQFGTKRVHGFAGPDTSGTPALLITGDSDNTHFRVFSNQ
NQELCSIRRQKQTWKNMLTDQDSYDVTINYGSPALMCFIAVALDEIYED*
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mRNA from alignment at tig00000858_pilon:553850..554749-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2938.t2 ID=Ggra2938.t2|Name=Ggra2938.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000858_pilon:553850..554749- (Gracilaria gracilis GNS1m male)
ATGCACGGCATGCACCCGTACATGCTGCAGCCGTTCCACATGCCGTACGC
GCTGCCGCCGGCCGCCATGCCGTACGGCATGATGCCGTACATGCAGCCGT
ACGCACAGTACCCGTCGCCGTACGCGCAGCCGTATGCGCCGCCGCCGCCC
TACTACGCGCCACCTTACGCGCCGCACGCCTATGCGCCGCCGCCGTACGC
GTCGCACCCGCCCATGCCGCAAATGCCGCTTCACAAACCGCCCGAGCCCG
CGCCCGCGCCCGCGCATCCGCACCCCCAGCCAGCGCCCTCCAGCGCCCAT
TTCTCGCAGCAGCTTCTCAACGCCGCGCGCGTCGATATGTACGGGCTGCC
CGTTGTGCCGGGCGATGTGCCCGTCACGTATCCGCAGGTGTTCCGTCTGG
AGGAGAAGTTGCTCGGTGCAATTCGTGGCGCCTTTCACGCGCGCGACCAG
CAGGGAACCTTGCGCTACAAAGTGGATAGCAAGTTGGCCTCCTTGCATGA
ACGAAAGGTTCTCAAGGATGTCAATGGTCAGGTTTTGCTCAAGCTGCGCG
AGCAACGTCTTACCGTACGCAATCGAATTACTTTCTTCTCGCCTACCAAT
ATAGCCATACTTACCTTGCAGAAGACCACCGCCGTTCAGTTTGGAACCAA
GAGAGTTCATGGTTTCGCAGGCCCTGATACCTCTGGCACGCCTGCACTGC
TAATCACTGGCGATTCAGATAACACCCACTTTAGAGTGTTCAGTAACCAA
AACCAAGAGCTTTGCAGCATTCGACGCCAAAAGCAGACGTGGAAGAATAT
GCTCACCGACCAGGACTCCTACGATGTCACCATCAATTACGGTTCTCCTG
CTTTGATGTGCTTCATTGCCGTTGCGCTAGATGAGATATATGAAGATTAG
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Coding sequence (CDS) from alignment at tig00000858_pilon:553850..554749-

>Ggra2938.t2 ID=Ggra2938.t2|Name=Ggra2938.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000858_pilon:553850..554749- (Gracilaria gracilis GNS1m male)
ATGCACGGCATGCACCCGTACATGCTGCAGCCGTTCCACATGCCGTACGC
GCTGCCGCCGGCCGCCATGCCGTACGGCATGATGCCGTACATGCAGCCGT
ACGCACAGTACCCGTCGCCGTACGCGCAGCCGTATGCGCCGCCGCCGCCC
TACTACGCGCCACCTTACGCGCCGCACGCCTATGCGCCGCCGCCGTACGC
GTCGCACCCGCCCATGCCGCAAATGCCGCTTCACAAACCGCCCGAGCCCG
CGCCCGCGCCCGCGCATCCGCACCCCCAGCCAGCGCCCTCCAGCGCCCAT
TTCTCGCAGCAGCTTCTCAACGCCGCGCGCGTCGATATGTACGGGCTGCC
CGTTGTGCCGGGCGATGTGCCCGTCACGTATCCGCAGGTGTTCCGTCTGG
AGGAGAAGTTGCTCGGTGCAATTCGTGGCGCCTTTCACGCGCGCGACCAG
CAGGGAACCTTGCGCTACAAAGTGGATAGCAAGTTGGCCTCCTTGCATGA
ACGAAAGGTTCTCAAGGATGTCAATGGTCAGGTTTTGCTCAAGCTGCGCG
AGCAACGTCTTACCGTACGCAATCGAATTACTTTCTTCTCGCCTACCAAT
ATAGCCATACTTACCTTGCAGAAGACCACCGCCGTTCAGTTTGGAACCAA
GAGAGTTCATGGTTTCGCAGGCCCTGATACCTCTGGCACGCCTGCACTGC
TAATCACTGGCGATTCAGATAACACCCACTTTAGAGTGTTCAGTAACCAA
AACCAAGAGCTTTGCAGCATTCGACGCCAAAAGCAGACGTGGAAGAATAT
GCTCACCGACCAGGACTCCTACGATGTCACCATCAATTACGGTTCTCCTG
CTTTGATGTGCTTCATTGCCGTTGCGCTAGATGAGATATATGAAGATTAG
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