Ggra2937.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2937.t1
Unique NameGgra2937.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length196
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:552458..553101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2937Ggra2937Gracilaria gracilis GNS1m malegenetig00000858_pilon 552458..553101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2937.t1Ggra2937.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 552458..553101 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2937.t1.start1Ggra2937.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 552458..552460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2937.t1.CDS1Ggra2937.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 552458..552591 +
Ggra2937.t1.CDS2Ggra2937.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 552648..553101 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2937.t1.exon1Ggra2937.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 552458..552591 +
Ggra2937.t1.exon2Ggra2937.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 552648..553101 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2937.t1.intron1Ggra2937.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 552592..552647 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2937.t1.stop1Ggra2937.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 553099..553101 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2937.t1 ID=Ggra2937.t1|Name=Ggra2937.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=196bp
MAAKALPQQKAIELYNSCLAASKDKRGVKIRDVDAFHRRMDKINKSLSFF
DMELKTIYSPWDQVQYWAFVNTLEDETVESATSFKGIHEKKMFFEVISEL
MDDLQSDGDGMLPHTDMQNLATNHGMTIADGSQMLQSMNQLKWLKTVRGR
SGEIFIAPGPRSLLELPQLRTLTIKLNMKGIKGFGESATPSASQQ*
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spliced messenger RNA

>Ggra2937.t1 ID=Ggra2937.t1|Name=Ggra2937.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000858_pilon:552458..553101+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCCAAAGCGTTACCTCAACAAAAGGCGATAGAACTTTACAACTC
GTGTCTGGCAGCAAGCAAAGACAAGCGCGGTGTCAAAATCCGTGACGTTG
ATGCCTTTCATCGCCGAATGGACAAAATCAACAAATCGCTAAGTTTCTTC
GATATGGAACTGAAAACCATCTACTCGCCGTGGGATCAGGTACAATACTG
GGCCTTTGTGAACACTCTGGAAGACGAGACTGTTGAAAGCGCCACTTCAT
TTAAGGGCATACACGAGAAGAAGATGTTCTTCGAAGTTATTAGTGAACTA
ATGGATGACTTGCAAAGCGATGGAGACGGTATGTTACCACATACAGACAT
GCAAAATCTTGCTACGAATCATGGCATGACCATTGCAGATGGATCACAGA
TGTTACAGAGCATGAACCAGCTGAAGTGGCTCAAAACGGTGCGAGGGCGC
TCTGGTGAAATTTTTATTGCACCAGGCCCTCGAAGTTTGCTTGAACTACC
TCAGCTACGAACTTTGACCATCAAACTGAACATGAAAGGCATTAAGGGCT
TCGGGGAATCTGCGACACCATCTGCCTCTCAACAATAG
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protein sequence of Ggra2937.t1

>Ggra2937.t1 ID=Ggra2937.t1|Name=Ggra2937.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=196bp
MAAKALPQQKAIELYNSCLAASKDKRGVKIRDVDAFHRRMDKINKSLSFF
DMELKTIYSPWDQVQYWAFVNTLEDETVESATSFKGIHEKKMFFEVISEL
MDDLQSDGDGMLPHTDMQNLATNHGMTIADGSQMLQSMNQLKWLKTVRGR
SGEIFIAPGPRSLLELPQLRTLTIKLNMKGIKGFGESATPSASQQ*
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mRNA from alignment at tig00000858_pilon:552458..553101+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2937.t1 ID=Ggra2937.t1|Name=Ggra2937.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=644bp|location=Sequence derived from alignment at tig00000858_pilon:552458..553101+ (Gracilaria gracilis GNS1m male)
ATGGCAGCCAAAGCGTTACCTCAACAAAAGGCGATAGAACTTTACAACTC
GTGTCTGGCAGCAAGCAAAGACAAGCGCGGTGTCAAAATCCGTGACGTTG
ATGCCTTTCATCGCCGAATGGACAAAATCAACAAGTACGTACGCTGCTGA
CAAACCATCCTCTGAAACGCTTTCCTAACTGTTTGCCCAGATCGCTAAGT
TTCTTCGATATGGAACTGAAAACCATCTACTCGCCGTGGGATCAGGTACA
ATACTGGGCCTTTGTGAACACTCTGGAAGACGAGACTGTTGAAAGCGCCA
CTTCATTTAAGGGCATACACGAGAAGAAGATGTTCTTCGAAGTTATTAGT
GAACTAATGGATGACTTGCAAAGCGATGGAGACGGTATGTTACCACATAC
AGACATGCAAAATCTTGCTACGAATCATGGCATGACCATTGCAGATGGAT
CACAGATGTTACAGAGCATGAACCAGCTGAAGTGGCTCAAAACGGTGCGA
GGGCGCTCTGGTGAAATTTTTATTGCACCAGGCCCTCGAAGTTTGCTTGA
ACTACCTCAGCTACGAACTTTGACCATCAAACTGAACATGAAAGGCATTA
AGGGCTTCGGGGAATCTGCGACACCATCTGCCTCTCAACAATAG
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Coding sequence (CDS) from alignment at tig00000858_pilon:552458..553101+

>Ggra2937.t1 ID=Ggra2937.t1|Name=Ggra2937.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=588bp|location=Sequence derived from alignment at tig00000858_pilon:552458..553101+ (Gracilaria gracilis GNS1m male)
ATGGCAGCCAAAGCGTTACCTCAACAAAAGGCGATAGAACTTTACAACTC
GTGTCTGGCAGCAAGCAAAGACAAGCGCGGTGTCAAAATCCGTGACGTTG
ATGCCTTTCATCGCCGAATGGACAAAATCAACAAATCGCTAAGTTTCTTC
GATATGGAACTGAAAACCATCTACTCGCCGTGGGATCAGGTACAATACTG
GGCCTTTGTGAACACTCTGGAAGACGAGACTGTTGAAAGCGCCACTTCAT
TTAAGGGCATACACGAGAAGAAGATGTTCTTCGAAGTTATTAGTGAACTA
ATGGATGACTTGCAAAGCGATGGAGACGGTATGTTACCACATACAGACAT
GCAAAATCTTGCTACGAATCATGGCATGACCATTGCAGATGGATCACAGA
TGTTACAGAGCATGAACCAGCTGAAGTGGCTCAAAACGGTGCGAGGGCGC
TCTGGTGAAATTTTTATTGCACCAGGCCCTCGAAGTTTGCTTGAACTACC
TCAGCTACGAACTTTGACCATCAAACTGAACATGAAAGGCATTAAGGGCT
TCGGGGAATCTGCGACACCATCTGCCTCTCAACAATAG
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