Ggra2929.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2929.t1
Unique NameGgra2929.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:530741..531511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2929Ggra2929Gracilaria gracilis GNS1m malegenetig00000858_pilon 530741..531511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2929.t1Ggra2929.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 530741..531511 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2929.t1.start1Ggra2929.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 530741..530743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2929.t1.CDS1Ggra2929.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 530741..530967 +
Ggra2929.t1.CDS2Ggra2929.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 531069..531133 +
Ggra2929.t1.CDS3Ggra2929.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000858_pilon 531270..531511 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2929.t1.exon1Ggra2929.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 530741..530967 +
Ggra2929.t1.exon2Ggra2929.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 531069..531133 +
Ggra2929.t1.exon3Ggra2929.t1.exon3Gracilaria gracilis GNS1m maleexontig00000858_pilon 531270..531511 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2929.t1.intron1Ggra2929.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 530968..531068 +
Ggra2929.t1.intron2Ggra2929.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000858_pilon 531134..531269 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2929.t1.stop1Ggra2929.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 531509..531511 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2929.t1 ID=Ggra2929.t1|Name=Ggra2929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MSSSRSPKMDLNFILTQTGDGGTSSSQANRTNTAGPSSSSRSHDRKSSSS
KGLRKYPCPICGATFAQSHDALKHRRTVHDKLRPFKCEICGNSFGEKGNL
SKHKKSVHYKEKPYGCDICGSSFAFKDGLQRHRSLVHLDQRPHKCAVCGA
MFKQKSQLRRHFCTGENPNQMNDIQMR*
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spliced messenger RNA

>Ggra2929.t1 ID=Ggra2929.t1|Name=Ggra2929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000858_pilon:530741..531511+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCTCACGCAGCCCGAAGATGGACCTTAATTTCATACTTACCCA
AACAGGCGATGGGGGTACCTCTTCATCCCAAGCTAACCGAACGAATACCG
CTGGGCCGTCATCATCCTCTCGAAGTCACGACAGAAAGTCTTCATCTTCG
AAAGGTCTTCGAAAATATCCATGTCCGATATGCGGGGCGACGTTTGCGCA
GAGTCATGATGCGCTGAAGCACAGAAGGACGGTTCATGACAAGCTCCGGC
CTTTCAAGTGCGAAATATGCGGTAATAGCTTCGGAGAGAAAGGAAATCTA
AGCAAGCATAAGAAATCTGTGCATTACAAAGAGAAGCCCTACGGCTGTGA
TATCTGCGGATCAAGTTTCGCCTTCAAAGATGGTCTACAGAGGCACCGTT
CCTTGGTACACCTGGACCAACGACCCCACAAATGTGCCGTCTGCGGCGCA
ATGTTCAAACAAAAGTCGCAATTAAGGAGACACTTCTGTACAGGGGAGAA
CCCGAATCAAATGAATGACATACAGATGCGATGA
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protein sequence of Ggra2929.t1

>Ggra2929.t1 ID=Ggra2929.t1|Name=Ggra2929.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MSSSRSPKMDLNFILTQTGDGGTSSSQANRTNTAGPSSSSRSHDRKSSSS
KGLRKYPCPICGATFAQSHDALKHRRTVHDKLRPFKCEICGNSFGEKGNL
SKHKKSVHYKEKPYGCDICGSSFAFKDGLQRHRSLVHLDQRPHKCAVCGA
MFKQKSQLRRHFCTGENPNQMNDIQMR*
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mRNA from alignment at tig00000858_pilon:530741..531511+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2929.t1 ID=Ggra2929.t1|Name=Ggra2929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000858_pilon:530741..531511+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCTCACGCAGCCCGAAGATGGACCTTAATTTCATACTTACCCA
AACAGGCGATGGGGGTACCTCTTCATCCCAAGCTAACCGAACGAATACCG
CTGGGCCGTCATCATCCTCTCGAAGTCACGACAGAAAGTCTTCATCTTCG
AAAGGTCTTCGAAAATATCCATGTCCGATATGCGGGGCGACGTTTGCGCA
GAGTCATGATGCGCTGAAGCACAGAAGGTTGGTTCTACCCGTCACAAGCA
CGAGCGGCCATTGGCGAGTACCTGTTCTGAAAATGTTTCTAACCATGTGT
TGTATACTTTCAAACTATGTGCTTGCAGGACGGTTCATGACAAGCTCCGG
CCTTTCAAGTGCGAAATATGCGGTAATAGCTTCGGAGAGAAAGGTAAGGT
GGAGGCGCTTCTTGTTTGATCAATCTACGCACGCTTCTTACTCTGATCTC
TTTGACTCTTGTTATTGAACTCCAAGCTAACCATTAATGCTATCATCATC
TGCTGTTGTGAACCATGACTGTGCTATAGGAAATCTAAGCAAGCATAAGA
AATCTGTGCATTACAAAGAGAAGCCCTACGGCTGTGATATCTGCGGATCA
AGTTTCGCCTTCAAAGATGGTCTACAGAGGCACCGTTCCTTGGTACACCT
GGACCAACGACCCCACAAATGTGCCGTCTGCGGCGCAATGTTCAAACAAA
AGTCGCAATTAAGGAGACACTTCTGTACAGGGGAGAACCCGAATCAAATG
AATGACATACAGATGCGATGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:530741..531511+

>Ggra2929.t1 ID=Ggra2929.t1|Name=Ggra2929.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000858_pilon:530741..531511+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCTCACGCAGCCCGAAGATGGACCTTAATTTCATACTTACCCA
AACAGGCGATGGGGGTACCTCTTCATCCCAAGCTAACCGAACGAATACCG
CTGGGCCGTCATCATCCTCTCGAAGTCACGACAGAAAGTCTTCATCTTCG
AAAGGTCTTCGAAAATATCCATGTCCGATATGCGGGGCGACGTTTGCGCA
GAGTCATGATGCGCTGAAGCACAGAAGGACGGTTCATGACAAGCTCCGGC
CTTTCAAGTGCGAAATATGCGGTAATAGCTTCGGAGAGAAAGGAAATCTA
AGCAAGCATAAGAAATCTGTGCATTACAAAGAGAAGCCCTACGGCTGTGA
TATCTGCGGATCAAGTTTCGCCTTCAAAGATGGTCTACAGAGGCACCGTT
CCTTGGTACACCTGGACCAACGACCCCACAAATGTGCCGTCTGCGGCGCA
ATGTTCAAACAAAAGTCGCAATTAAGGAGACACTTCTGTACAGGGGAGAA
CCCGAATCAAATGAATGACATACAGATGCGATGA
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