Ggra2928.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2928.t1
Unique NameGgra2928.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length533
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:525977..529174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709000.1
PFAMsPMT,PMT_4TMC,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059,RC00397
KEGG koko:K00728
KEGG ReactionR04072,R07620,R11399
KEGG Pathwayko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue2.17e-130
EggNOG OGsCOG1928@1|root,KOG3359@2759|Eukaryota
EC2.4.1.109
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
CAZyGT39
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2928Ggra2928Gracilaria gracilis GNS1m malegenetig00000858_pilon 525977..529174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2928.t1Ggra2928.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 525977..529174 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2928.t1.start1Ggra2928.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 525977..525979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2928.t1.CDS1Ggra2928.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 525977..526176 +
Ggra2928.t1.CDS2Ggra2928.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 526263..526321 +
Ggra2928.t1.CDS3Ggra2928.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000858_pilon 526384..527630 +
Ggra2928.t1.CDS4Ggra2928.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000858_pilon 529014..529102 +
Ggra2928.t1.CDS5Ggra2928.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000858_pilon 529171..529174 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2928.t1.exon1Ggra2928.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 525977..526176 +
Ggra2928.t1.exon2Ggra2928.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 526263..526321 +
Ggra2928.t1.exon3Ggra2928.t1.exon3Gracilaria gracilis GNS1m maleexontig00000858_pilon 526384..527630 +
Ggra2928.t1.exon4Ggra2928.t1.exon4Gracilaria gracilis GNS1m maleexontig00000858_pilon 529014..529102 +
Ggra2928.t1.exon5Ggra2928.t1.exon5Gracilaria gracilis GNS1m maleexontig00000858_pilon 529171..529174 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2928.t1.intron1Ggra2928.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 526177..526262 +
Ggra2928.t1.intron2Ggra2928.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000858_pilon 526322..526383 +
Ggra2928.t1.intron3Ggra2928.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000858_pilon 527631..529013 +
Ggra2928.t1.intron4Ggra2928.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000858_pilon 529103..529170 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2928.t1.stop1Ggra2928.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 529172..529174 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2928.t1 ID=Ggra2928.t1|Name=Ggra2928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=533bp
MTGLRLRRSKAAQAVPQPLRCKSSDDHEPPRVHYPNPLLSRVDYAALAVL
IILAVATRFYRLATPPAVVFDELHFSKFVDRLLTGTWFFDIHPPLGKLIL
AYGSFLLGYRPEPTFVIEKIGNPYPEHVKYFLVRSVSAFFSVCTIPLTYL
ISRSLLISSTSSILASCSVLLDFLGLIEGRLILMDSQLLFFCQLALLCAL
QLWRTTPKTKERWVWLTATGIFAGAALSIKHTALATPGLIAVISFFGLHF
LRSPLNLLECAWAGLCGLVLYASTFYIMFNTLWKTGGKYDRFMPIHFRRT
LLGADMYDPTAKRVSFIRLFSYLNRRMVQSNASIKKRHTWESDWYQWIVN
WRGVLYFLHKEPKDNITIRTQIYLLGNPVVIYGTLMCVLMFSVAVLLSAR
YREHVRRWKQYGQLQWIRSTGIFLLSGWLCNLLPYILVDRAAFIYHYIPG
LFYGQLLMGLTLDAVPPKARALAATVIVLSMVAAFAYWSPWVYAIPMVTE
EHQATAEVPSLGATTRIESALDGNRQSSKLRK*
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spliced messenger RNA

>Ggra2928.t1 ID=Ggra2928.t1|Name=Ggra2928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1599bp|location=Sequence derived from alignment at tig00000858_pilon:525977..529174+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGATTGCGCTTGCGACGATCGAAAGCCGCTCAGGCTGTTCCACA
ACCTCTGAGGTGCAAATCATCCGACGATCATGAGCCACCAAGAGTTCATT
ACCCGAATCCGCTCCTTTCTCGTGTGGATTACGCCGCATTGGCCGTGCTC
ATTATTCTTGCCGTTGCAACCAGGTTTTATCGCCTTGCAACCCCCCCAGC
TGTTGTTTTCGATGAGTTGCATTTTTCGAAGTTCGTCGATCGGCTTCTAA
CTGGTACATGGTTCTTTGACATCCATCCTCCTTTAGGAAAGCTTATTCTG
GCGTATGGTAGCTTCCTCCTGGGCTACCGGCCAGAACCCACATTTGTGAT
AGAGAAAATTGGAAACCCCTATCCAGAACACGTGAAGTACTTTCTGGTTC
GTTCTGTGTCAGCATTCTTCAGCGTTTGTACAATTCCGTTGACGTACCTC
ATATCACGCAGTTTGCTTATTTCGAGTACGAGTAGTATCCTCGCTTCATG
CTCAGTCTTGCTGGACTTTCTAGGCCTGATCGAAGGCAGACTCATACTTA
TGGACTCGCAACTATTGTTCTTCTGCCAGTTGGCTCTCCTTTGCGCATTG
CAGTTGTGGAGAACAACACCGAAGACTAAAGAACGATGGGTGTGGCTTAC
GGCTACTGGAATTTTTGCTGGAGCCGCTCTTTCCATCAAACACACAGCGC
TGGCAACTCCGGGACTGATTGCCGTCATATCTTTTTTTGGACTTCATTTC
CTGAGGAGTCCGCTTAACTTGTTGGAATGTGCGTGGGCCGGATTATGTGG
TCTCGTGTTATACGCATCAACTTTTTACATAATGTTTAACACCCTGTGGA
AAACTGGCGGTAAGTATGACAGATTTATGCCGATACACTTTCGTCGAACT
CTTTTAGGTGCAGATATGTATGATCCCACGGCCAAGAGGGTGTCTTTCAT
CAGACTGTTTAGTTACCTGAATCGAAGGATGGTGCAAAGCAATGCCAGCA
TAAAAAAGAGACATACCTGGGAATCGGACTGGTACCAATGGATTGTGAAC
TGGCGCGGCGTACTATACTTCTTGCACAAGGAGCCCAAGGACAATATTAC
GATTAGGACACAAATATACTTACTGGGAAATCCAGTGGTAATCTACGGGA
CACTGATGTGTGTGCTGATGTTCAGCGTTGCTGTATTGTTATCAGCGAGA
TACCGCGAGCATGTGCGGCGATGGAAGCAATACGGGCAGCTGCAGTGGAT
TCGAAGCACGGGGATATTCCTTCTCAGCGGATGGCTGTGTAACTTGCTGC
CTTATATTCTTGTAGATCGAGCTGCATTCATATACCACTACATCCCTGGC
TTGTTCTACGGCCAGCTGCTGATGGGACTAACGCTAGATGCAGTGCCGCC
CAAAGCACGCGCATTGGCAGCGACTGTTATTGTCTTGAGCATGGTGGCTG
CGTTCGCATACTGGTCGCCTTGGGTCTACGCGATTCCTATGGTCACCGAG
GAACATCAGGCAACAGCTGAGGTCCCATCTTTGGGCGCTACTACGAGGAT
TGAAAGTGCACTCGATGGGAATCGTCAATCGAGCAAACTACGAAAGTAA
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protein sequence of Ggra2928.t1

>Ggra2928.t1 ID=Ggra2928.t1|Name=Ggra2928.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=533bp
MTGLRLRRSKAAQAVPQPLRCKSSDDHEPPRVHYPNPLLSRVDYAALAVL
IILAVATRFYRLATPPAVVFDELHFSKFVDRLLTGTWFFDIHPPLGKLIL
AYGSFLLGYRPEPTFVIEKIGNPYPEHVKYFLVRSVSAFFSVCTIPLTYL
ISRSLLISSTSSILASCSVLLDFLGLIEGRLILMDSQLLFFCQLALLCAL
QLWRTTPKTKERWVWLTATGIFAGAALSIKHTALATPGLIAVISFFGLHF
LRSPLNLLECAWAGLCGLVLYASTFYIMFNTLWKTGGKYDRFMPIHFRRT
LLGADMYDPTAKRVSFIRLFSYLNRRMVQSNASIKKRHTWESDWYQWIVN
WRGVLYFLHKEPKDNITIRTQIYLLGNPVVIYGTLMCVLMFSVAVLLSAR
YREHVRRWKQYGQLQWIRSTGIFLLSGWLCNLLPYILVDRAAFIYHYIPG
LFYGQLLMGLTLDAVPPKARALAATVIVLSMVAAFAYWSPWVYAIPMVTE
EHQATAEVPSLGATTRIESALDGNRQSSKLRK*
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mRNA from alignment at tig00000858_pilon:525977..529174+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2928.t1 ID=Ggra2928.t1|Name=Ggra2928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3198bp|location=Sequence derived from alignment at tig00000858_pilon:525977..529174+ (Gracilaria gracilis GNS1m male)
ATGACTGGATTGCGCTTGCGACGATCGAAAGCCGCTCAGGCTGTTCCACA
ACCTCTGAGGTGCAAATCATCCGACGATCATGAGCCACCAAGAGTTCATT
ACCCGAATCCGCTCCTTTCTCGTGTGGATTACGCCGCATTGGCCGTGCTC
ATTATTCTTGCCGTTGCAACCAGGTTTTATCGCCTTGCAACCCCCCCAGC
GTAAGAATTTCGTTCCACAAAATGCCCATTTCACAGTCTAGGTACCGATT
CTAACATGCTCTCGTTCTTGAACGTGATTGCAATAGTGTTGTTTTCGATG
AGTTGCATTTTTCGAAGTTCGTCGATCGGCTTCTAACTGGTACATGTAAG
TTCAAAAACTAGTCGCCTTCAAATGGAGTACGTGTAGTTTCTGACGGTTT
TGGCCAGGGTTCTTTGACATCCATCCTCCTTTAGGAAAGCTTATTCTGGC
GTATGGTAGCTTCCTCCTGGGCTACCGGCCAGAACCCACATTTGTGATAG
AGAAAATTGGAAACCCCTATCCAGAACACGTGAAGTACTTTCTGGTTCGT
TCTGTGTCAGCATTCTTCAGCGTTTGTACAATTCCGTTGACGTACCTCAT
ATCACGCAGTTTGCTTATTTCGAGTACGAGTAGTATCCTCGCTTCATGCT
CAGTCTTGCTGGACTTTCTAGGCCTGATCGAAGGCAGACTCATACTTATG
GACTCGCAACTATTGTTCTTCTGCCAGTTGGCTCTCCTTTGCGCATTGCA
GTTGTGGAGAACAACACCGAAGACTAAAGAACGATGGGTGTGGCTTACGG
CTACTGGAATTTTTGCTGGAGCCGCTCTTTCCATCAAACACACAGCGCTG
GCAACTCCGGGACTGATTGCCGTCATATCTTTTTTTGGACTTCATTTCCT
GAGGAGTCCGCTTAACTTGTTGGAATGTGCGTGGGCCGGATTATGTGGTC
TCGTGTTATACGCATCAACTTTTTACATAATGTTTAACACCCTGTGGAAA
ACTGGCGGTAAGTATGACAGATTTATGCCGATACACTTTCGTCGAACTCT
TTTAGGTGCAGATATGTATGATCCCACGGCCAAGAGGGTGTCTTTCATCA
GACTGTTTAGTTACCTGAATCGAAGGATGGTGCAAAGCAATGCCAGCATA
AAAAAGAGACATACCTGGGAATCGGACTGGTACCAATGGATTGTGAACTG
GCGCGGCGTACTATACTTCTTGCACAAGGAGCCCAAGGACAATATTACGA
TTAGGACACAAATATACTTACTGGGAAATCCAGTGGTAATCTACGGGACA
CTGATGTGTGTGCTGATGTTCAGCGTTGCTGTATTGTTATCAGCGAGATA
CCGCGAGCATGTGCGGCGATGGAAGCAATACGGGCAGCTGCAGTGGATTC
GAAGCACGGGGATATTCCTTCTCAGCGGATGGCTGTGTAACTTGCTGCCT
TATATTCTTGTAGATCGAGCTGCATTCATATACCACTACATCCCTGGCTT
GTTCTACGGCCAGCTGCTGATGGGACTAACGCTAGATGCAGTGCCGCCCA
AAGCACGCGCATTGGCAGCGACTGTTATTGTCTTGAGCATGGTGGCTGCG
TTCGCATACTGGTCGCCTTGGGTCTACGCGATTCCTATGGTCACCGAGGA
ACATGTAAAGCGGAGATGGTTGCCGAAGTGGACGTGAACTGCTGTGCTGG
AAGGAACAGGTCACCAAGCGCACGAGAAAAACGATAGAATTAGAGAGTGG
TACGCAGCGATCAGAGCCTGGACGCAAAGCGAGGAGACTTGATTGCTCTC
GCGACGGTGAGCTCGTTGGTGACTAAGATTCTGGTAAGCTACGCTGGCCA
GCCTGTCCCGCAGAACGAAATGGGACAACTAGCAATAGCACTGGTGAGAC
TTTGGTGGCGCGGACAACACGGCGGTATCGCGTGGGCTGGCGCGCGCATC
TATCTATCAGTATGAGACGATCTGACAGTCGTCAAAAACAGCAGTGGAAT
CGGAACGACGGCTATAAATATGTGCGTCTATATCTAACGGGGTTGCAGGT
TGCGCCGCAGATGTCGTCTAGGAGACGCGCAACACCACCTGTAATCAAAA
CAAGTTTACTTGTTTCACTCTCGCGAGCGCATCAGAGCGCCAGACTGACG
CTCGGCGATGCAAACGCTCGTCCACTGTTTGCGTGCAGCCACCGTCCGCC
CCCCACACTTACCAACGTTTCATCTCCACATCACGTACTGTCGTAGAAAG
CAAACGAGGCGCGGAAAAAAACAACCGTCCAGCTCAGTAACGCCCTCTCA
AATTGATCTGCTGACTTGTGCAGCACAAACTTTCGCCACGATACTGGTCA
GATGCTTGGCTGTGGAACGAGAAAGACGTTTGTTTCGTTCAGACGACGAT
TATCTGGTTATTTGCACCCACGTTCGACGCTCACAAGCCTAGAAGATCTG
TTAACTCGTTGTGGTCCATTCCTCTCACTCACCCCTCTCAAGTCCCTCGC
AAATGTCCTCGTATCAATTCGCATCGCTGAACACATCCCCACGACACTAC
GTTTAATCTTACACGCACTTTCTTTCAATTCGTGCCCACAATGTGTGAGC
TTCGTACCATCAATTCTGACGCGTTGGGGCCCCCATTTATGCTGCGTCGA
TCCTAGCTGGTATTGCTGGTTGGGCAACCACCTATAATGACCACAAACGC
GTTCGGAAAGCGTTGAACGAGCTTTCAATTTGTCACGGAGATCCCATCGC
CGTACCTGCTTCCAAGGACTTGCGATGAAAGATAACTCAGGAACTTCATA
ATTCTACGGTGCAGATAATTACGACGCTAGCTGCCAACGAACTTGTGGAA
ACTCCTAAGGATTGTGCAGTACATGATGCGGTGCATTCAAAGAGTTTGGT
TTGGACTTACTCTACGAAGTGACATTTTGTAAGCGGCACGCAAACATAAC
GTCGCTTTTAACGTTTCCGTGGGCCAAGAGGCGTGGTAAGTTCGCTCTCT
TTAATCCGCATTGCATTTCGTTATCAAACCTCATTAGCAGGCAACAGCTG
AGGTCCCATCTTTGGGCGCTACTACGAGGATTGAAAGTGCACTCGATGGG
AATCGTCAATCGAGCAAACTACGAAAGTAAGAGTTCTTGAGCTTCGTACC
ACATTTCTTTCTGGCCAAAACTGACCTCTTTCGGTTCCACATAGGTAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:525977..529174+

>Ggra2928.t1 ID=Ggra2928.t1|Name=Ggra2928.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1599bp|location=Sequence derived from alignment at tig00000858_pilon:525977..529174+ (Gracilaria gracilis GNS1m male)
ATGACTGGATTGCGCTTGCGACGATCGAAAGCCGCTCAGGCTGTTCCACA
ACCTCTGAGGTGCAAATCATCCGACGATCATGAGCCACCAAGAGTTCATT
ACCCGAATCCGCTCCTTTCTCGTGTGGATTACGCCGCATTGGCCGTGCTC
ATTATTCTTGCCGTTGCAACCAGGTTTTATCGCCTTGCAACCCCCCCAGC
TGTTGTTTTCGATGAGTTGCATTTTTCGAAGTTCGTCGATCGGCTTCTAA
CTGGTACATGGTTCTTTGACATCCATCCTCCTTTAGGAAAGCTTATTCTG
GCGTATGGTAGCTTCCTCCTGGGCTACCGGCCAGAACCCACATTTGTGAT
AGAGAAAATTGGAAACCCCTATCCAGAACACGTGAAGTACTTTCTGGTTC
GTTCTGTGTCAGCATTCTTCAGCGTTTGTACAATTCCGTTGACGTACCTC
ATATCACGCAGTTTGCTTATTTCGAGTACGAGTAGTATCCTCGCTTCATG
CTCAGTCTTGCTGGACTTTCTAGGCCTGATCGAAGGCAGACTCATACTTA
TGGACTCGCAACTATTGTTCTTCTGCCAGTTGGCTCTCCTTTGCGCATTG
CAGTTGTGGAGAACAACACCGAAGACTAAAGAACGATGGGTGTGGCTTAC
GGCTACTGGAATTTTTGCTGGAGCCGCTCTTTCCATCAAACACACAGCGC
TGGCAACTCCGGGACTGATTGCCGTCATATCTTTTTTTGGACTTCATTTC
CTGAGGAGTCCGCTTAACTTGTTGGAATGTGCGTGGGCCGGATTATGTGG
TCTCGTGTTATACGCATCAACTTTTTACATAATGTTTAACACCCTGTGGA
AAACTGGCGGTAAGTATGACAGATTTATGCCGATACACTTTCGTCGAACT
CTTTTAGGTGCAGATATGTATGATCCCACGGCCAAGAGGGTGTCTTTCAT
CAGACTGTTTAGTTACCTGAATCGAAGGATGGTGCAAAGCAATGCCAGCA
TAAAAAAGAGACATACCTGGGAATCGGACTGGTACCAATGGATTGTGAAC
TGGCGCGGCGTACTATACTTCTTGCACAAGGAGCCCAAGGACAATATTAC
GATTAGGACACAAATATACTTACTGGGAAATCCAGTGGTAATCTACGGGA
CACTGATGTGTGTGCTGATGTTCAGCGTTGCTGTATTGTTATCAGCGAGA
TACCGCGAGCATGTGCGGCGATGGAAGCAATACGGGCAGCTGCAGTGGAT
TCGAAGCACGGGGATATTCCTTCTCAGCGGATGGCTGTGTAACTTGCTGC
CTTATATTCTTGTAGATCGAGCTGCATTCATATACCACTACATCCCTGGC
TTGTTCTACGGCCAGCTGCTGATGGGACTAACGCTAGATGCAGTGCCGCC
CAAAGCACGCGCATTGGCAGCGACTGTTATTGTCTTGAGCATGGTGGCTG
CGTTCGCATACTGGTCGCCTTGGGTCTACGCGATTCCTATGGTCACCGAG
GAACATCAGGCAACAGCTGAGGTCCCATCTTTGGGCGCTACTACGAGGAT
TGAAAGTGCACTCGATGGGAATCGTCAATCGAGCAAACTACGAAAGTAA
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