Ggra2924.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2924.t1
Unique Name	Ggra2924.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	700

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:505093..507192 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5127.CCT63029
PFAMs	DUF1620,PQQ_2
Max annot lvl	4751\|Fungi
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006457,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0022406,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051640,GO:0051641,GO:0071840,GO:0072546,GO:0098796,GO:0098827,GO:0140056,GO:1990456
Evalue	2.43e-20
EggNOG OGs	KOG2103@1\|root,KOG2103@2759\|Eukaryota,394KZ@33154\|Opisthokonta,3NWQ6@4751\|Fungi,3QP8F@4890\|Ascomycota,211YX@147550\|Sordariomycetes,3TDTN@5125\|Hypocreales,1FSNB@110618\|Nectriaceae
Description	Protein of unknown function (DUF1620)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2924	Ggra2924	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 505093..507192 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2924.t1.stop1	Ggra2924.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 505093..505095 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2924.t1.CDS1	Ggra2924.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 505093..507192 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2924.t1.exon1	Ggra2924.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 505093..507192 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2924.t1.start1	Ggra2924.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 507190..507192 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2924.t1	Ggra2924.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 505093..507192 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:505093..507192-
coding sequence from alignment at tig00000858_pilon:505093..507192-

mRNA sequence

>Ggra2924.t1 ID=Ggra2924.t1|Name=Ggra2924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=700bp
MKLILFAVFFLCFSSLQIAVSPSPLFRKGLGRVVWVFVPNSSYPQSDVIV
LTARSTIASLSISDGSILWRLPHPISRDPVHPTAVVSNGEVIVAQFSDNR
IRSCQRNGSILWEMSSCQLQGLKGEMVLYQSCESEETWQVSLLNGVSRLL
DEENETPPISAEELDSYSIGRRTWQVQNVTLISLDDGRFEALRHGEVLWY
REEGISHPLDVTLFPFENLRVIVLLSELGFVAGLDSGADLKMLWKQSLKG
KCRLVNGHAEVVAIVCLNGKDSKVMTLSAISGEELFQKIYKDFVVRSAAI
HTTCKAYVCVHLLDANGRNEVVSAASTILDETHMIRIRYEAGGSELNAFD
AESTIWKINVAHNSKIFSVIYDQRHPFETTISPPSVRLTGDRRVLFKYAY
QHVLIVLSFDKEKECVYSMLIDGRSGETYEVIEHPRSVPTSLGTKGENWF
LYTTWNTELLVNEIHIVDMYQQKGLHASWVLKRLQESFSRYWTSLSYLTL
IQQKGQKPEANHANSTCTPDDTLSISGPEDHPYTVRSSMVLTHVPAGMAV
TRTKLGVTEQSVLFVLDSGQSALVSKSTVDARRPKDMNLAYASEYLRRYS
PSLSLQSSSYDNIYVEENRIQPVGIQSVLCAPDMSRESTSHIVLTGLDML
FTQVHPIGKFDFLDSDFNFLAILLVIALLLFSYLYSENLLQETSLSRSW*

spliced messenger RNA

>Ggra2924.t1 ID=Ggra2924.t1|Name=Ggra2924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2100bp|location=Sequence derived from alignment at tig00000858_pilon:505093..507192- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTAATCCTGTTCGCTGTTTTCTTCCTTTGCTTCTCGAGTCTCCA
GATCGCGGTGTCGCCCTCGCCATTATTCCGAAAAGGCCTGGGCCGGGTTG
TATGGGTCTTTGTTCCAAACTCCTCATATCCGCAATCTGATGTAATTGTG
CTCACAGCACGATCGACTATAGCGTCGTTGAGCATTAGCGACGGCTCCAT
CTTGTGGCGACTTCCGCATCCAATATCAAGAGATCCAGTCCACCCTACGG
CCGTCGTGTCCAACGGAGAAGTCATTGTGGCTCAATTTTCTGACAACAGA
ATACGTTCATGTCAAAGAAACGGTTCTATACTGTGGGAGATGAGTTCTTG
TCAACTGCAAGGTCTGAAAGGAGAAATGGTCTTATATCAATCTTGTGAGT
CAGAAGAAACCTGGCAAGTCAGTCTTCTGAACGGCGTCTCACGTTTGCTG
GACGAAGAGAATGAAACACCCCCCATATCTGCGGAAGAGCTTGACAGTTA
TAGCATTGGCAGAAGAACATGGCAAGTTCAGAATGTAACCCTTATATCGT
TAGATGATGGTCGATTTGAAGCTCTAAGACATGGCGAAGTTCTTTGGTAT
CGTGAGGAAGGCATTTCACATCCGCTAGATGTAACTTTGTTTCCTTTTGA
AAACCTGCGAGTAATAGTGCTGCTATCAGAATTGGGTTTCGTCGCCGGAC
TGGATAGTGGGGCAGACTTGAAAATGCTTTGGAAACAATCTTTGAAGGGT
AAATGCCGACTTGTCAACGGCCATGCAGAAGTTGTGGCCATAGTCTGCCT
CAATGGAAAGGATTCGAAAGTAATGACGCTGAGCGCGATTTCAGGGGAAG
AACTCTTTCAGAAGATATACAAGGACTTCGTCGTGCGAAGTGCAGCTATA
CATACAACATGTAAAGCATATGTATGTGTTCACCTTTTGGACGCTAATGG
CCGGAATGAAGTTGTTTCCGCAGCGAGTACTATTCTGGACGAAACACATA
TGATTCGAATCCGGTATGAAGCAGGGGGTTCTGAGCTAAATGCGTTTGAT
GCCGAGTCAACAATATGGAAGATAAACGTTGCTCATAATTCAAAGATCTT
CTCCGTCATCTATGACCAACGGCACCCATTTGAAACTACGATAAGCCCAC
CTTCTGTTCGATTAACAGGTGATCGACGGGTGTTATTCAAATATGCATAT
CAGCATGTTCTTATCGTTCTTTCGTTTGACAAAGAGAAGGAGTGTGTTTA
TTCCATGCTCATAGATGGACGCTCTGGTGAAACCTACGAGGTGATTGAAC
ATCCGAGATCAGTACCCACTTCTTTGGGAACAAAGGGAGAAAACTGGTTT
TTGTATACAACTTGGAATACAGAGTTATTGGTAAATGAAATTCATATAGT
GGATATGTATCAGCAAAAAGGACTTCATGCTTCATGGGTTCTAAAACGTC
TACAAGAATCATTTTCGAGATATTGGACTTCGCTCTCGTACTTGACTCTC
ATTCAACAGAAGGGACAAAAACCCGAAGCAAATCATGCTAATTCAACATG
TACCCCGGACGATACACTGTCCATATCAGGTCCGGAAGATCATCCTTATA
CAGTAAGATCGAGCATGGTTCTAACACACGTACCTGCTGGGATGGCCGTG
ACAAGAACTAAACTCGGTGTCACAGAACAATCAGTTTTGTTTGTTTTGGA
CTCCGGACAGAGCGCTCTTGTGTCGAAGTCAACAGTAGATGCACGACGAC
CGAAAGACATGAACTTGGCATACGCTTCGGAGTATCTGAGGAGGTATTCT
CCGTCGCTTTCGCTTCAGTCCTCGTCCTATGACAATATTTACGTGGAGGA
GAATAGAATCCAGCCAGTTGGAATTCAATCGGTGTTGTGCGCTCCTGACA
TGTCAAGGGAGAGTACAAGTCATATTGTCTTGACAGGGCTCGATATGCTT
TTTACTCAGGTACATCCTATTGGGAAGTTCGATTTTCTTGATTCTGACTT
CAATTTCTTAGCAATACTTCTCGTGATAGCCTTGCTCCTGTTTTCGTATC
TGTATAGTGAGAATCTTCTGCAAGAGACTTCCTTGTCAAGGTCATGGTAA

protein sequence of Ggra2924.t1

>Ggra2924.t1 ID=Ggra2924.t1|Name=Ggra2924.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=700bp
MKLILFAVFFLCFSSLQIAVSPSPLFRKGLGRVVWVFVPNSSYPQSDVIV
LTARSTIASLSISDGSILWRLPHPISRDPVHPTAVVSNGEVIVAQFSDNR
IRSCQRNGSILWEMSSCQLQGLKGEMVLYQSCESEETWQVSLLNGVSRLL
DEENETPPISAEELDSYSIGRRTWQVQNVTLISLDDGRFEALRHGEVLWY
REEGISHPLDVTLFPFENLRVIVLLSELGFVAGLDSGADLKMLWKQSLKG
KCRLVNGHAEVVAIVCLNGKDSKVMTLSAISGEELFQKIYKDFVVRSAAI
HTTCKAYVCVHLLDANGRNEVVSAASTILDETHMIRIRYEAGGSELNAFD
AESTIWKINVAHNSKIFSVIYDQRHPFETTISPPSVRLTGDRRVLFKYAY
QHVLIVLSFDKEKECVYSMLIDGRSGETYEVIEHPRSVPTSLGTKGENWF
LYTTWNTELLVNEIHIVDMYQQKGLHASWVLKRLQESFSRYWTSLSYLTL
IQQKGQKPEANHANSTCTPDDTLSISGPEDHPYTVRSSMVLTHVPAGMAV
TRTKLGVTEQSVLFVLDSGQSALVSKSTVDARRPKDMNLAYASEYLRRYS
PSLSLQSSSYDNIYVEENRIQPVGIQSVLCAPDMSRESTSHIVLTGLDML
FTQVHPIGKFDFLDSDFNFLAILLVIALLLFSYLYSENLLQETSLSRSW*

mRNA from alignment at tig00000858_pilon:505093..507192-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2924.t1 ID=Ggra2924.t1|Name=Ggra2924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2100bp|location=Sequence derived from alignment at tig00000858_pilon:505093..507192- (Gracilaria gracilis GNS1m male)
ATGAAGCTAATCCTGTTCGCTGTTTTCTTCCTTTGCTTCTCGAGTCTCCA
GATCGCGGTGTCGCCCTCGCCATTATTCCGAAAAGGCCTGGGCCGGGTTG
TATGGGTCTTTGTTCCAAACTCCTCATATCCGCAATCTGATGTAATTGTG
CTCACAGCACGATCGACTATAGCGTCGTTGAGCATTAGCGACGGCTCCAT
CTTGTGGCGACTTCCGCATCCAATATCAAGAGATCCAGTCCACCCTACGG
CCGTCGTGTCCAACGGAGAAGTCATTGTGGCTCAATTTTCTGACAACAGA
ATACGTTCATGTCAAAGAAACGGTTCTATACTGTGGGAGATGAGTTCTTG
TCAACTGCAAGGTCTGAAAGGAGAAATGGTCTTATATCAATCTTGTGAGT
CAGAAGAAACCTGGCAAGTCAGTCTTCTGAACGGCGTCTCACGTTTGCTG
GACGAAGAGAATGAAACACCCCCCATATCTGCGGAAGAGCTTGACAGTTA
TAGCATTGGCAGAAGAACATGGCAAGTTCAGAATGTAACCCTTATATCGT
TAGATGATGGTCGATTTGAAGCTCTAAGACATGGCGAAGTTCTTTGGTAT
CGTGAGGAAGGCATTTCACATCCGCTAGATGTAACTTTGTTTCCTTTTGA
AAACCTGCGAGTAATAGTGCTGCTATCAGAATTGGGTTTCGTCGCCGGAC
TGGATAGTGGGGCAGACTTGAAAATGCTTTGGAAACAATCTTTGAAGGGT
AAATGCCGACTTGTCAACGGCCATGCAGAAGTTGTGGCCATAGTCTGCCT
CAATGGAAAGGATTCGAAAGTAATGACGCTGAGCGCGATTTCAGGGGAAG
AACTCTTTCAGAAGATATACAAGGACTTCGTCGTGCGAAGTGCAGCTATA
CATACAACATGTAAAGCATATGTATGTGTTCACCTTTTGGACGCTAATGG
CCGGAATGAAGTTGTTTCCGCAGCGAGTACTATTCTGGACGAAACACATA
TGATTCGAATCCGGTATGAAGCAGGGGGTTCTGAGCTAAATGCGTTTGAT
GCCGAGTCAACAATATGGAAGATAAACGTTGCTCATAATTCAAAGATCTT
CTCCGTCATCTATGACCAACGGCACCCATTTGAAACTACGATAAGCCCAC
CTTCTGTTCGATTAACAGGTGATCGACGGGTGTTATTCAAATATGCATAT
CAGCATGTTCTTATCGTTCTTTCGTTTGACAAAGAGAAGGAGTGTGTTTA
TTCCATGCTCATAGATGGACGCTCTGGTGAAACCTACGAGGTGATTGAAC
ATCCGAGATCAGTACCCACTTCTTTGGGAACAAAGGGAGAAAACTGGTTT
TTGTATACAACTTGGAATACAGAGTTATTGGTAAATGAAATTCATATAGT
GGATATGTATCAGCAAAAAGGACTTCATGCTTCATGGGTTCTAAAACGTC
TACAAGAATCATTTTCGAGATATTGGACTTCGCTCTCGTACTTGACTCTC
ATTCAACAGAAGGGACAAAAACCCGAAGCAAATCATGCTAATTCAACATG
TACCCCGGACGATACACTGTCCATATCAGGTCCGGAAGATCATCCTTATA
CAGTAAGATCGAGCATGGTTCTAACACACGTACCTGCTGGGATGGCCGTG
ACAAGAACTAAACTCGGTGTCACAGAACAATCAGTTTTGTTTGTTTTGGA
CTCCGGACAGAGCGCTCTTGTGTCGAAGTCAACAGTAGATGCACGACGAC
CGAAAGACATGAACTTGGCATACGCTTCGGAGTATCTGAGGAGGTATTCT
CCGTCGCTTTCGCTTCAGTCCTCGTCCTATGACAATATTTACGTGGAGGA
GAATAGAATCCAGCCAGTTGGAATTCAATCGGTGTTGTGCGCTCCTGACA
TGTCAAGGGAGAGTACAAGTCATATTGTCTTGACAGGGCTCGATATGCTT
TTTACTCAGGTACATCCTATTGGGAAGTTCGATTTTCTTGATTCTGACTT
CAATTTCTTAGCAATACTTCTCGTGATAGCCTTGCTCCTGTTTTCGTATC
TGTATAGTGAGAATCTTCTGCAAGAGACTTCCTTGTCAAGGTCATGGTAA

Coding sequence (CDS) from alignment at tig00000858_pilon:505093..507192-

>Ggra2924.t1 ID=Ggra2924.t1|Name=Ggra2924.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2100bp|location=Sequence derived from alignment at tig00000858_pilon:505093..507192- (Gracilaria gracilis GNS1m male)
ATGAAGCTAATCCTGTTCGCTGTTTTCTTCCTTTGCTTCTCGAGTCTCCA
GATCGCGGTGTCGCCCTCGCCATTATTCCGAAAAGGCCTGGGCCGGGTTG
TATGGGTCTTTGTTCCAAACTCCTCATATCCGCAATCTGATGTAATTGTG
CTCACAGCACGATCGACTATAGCGTCGTTGAGCATTAGCGACGGCTCCAT
CTTGTGGCGACTTCCGCATCCAATATCAAGAGATCCAGTCCACCCTACGG
CCGTCGTGTCCAACGGAGAAGTCATTGTGGCTCAATTTTCTGACAACAGA
ATACGTTCATGTCAAAGAAACGGTTCTATACTGTGGGAGATGAGTTCTTG
TCAACTGCAAGGTCTGAAAGGAGAAATGGTCTTATATCAATCTTGTGAGT
CAGAAGAAACCTGGCAAGTCAGTCTTCTGAACGGCGTCTCACGTTTGCTG
GACGAAGAGAATGAAACACCCCCCATATCTGCGGAAGAGCTTGACAGTTA
TAGCATTGGCAGAAGAACATGGCAAGTTCAGAATGTAACCCTTATATCGT
TAGATGATGGTCGATTTGAAGCTCTAAGACATGGCGAAGTTCTTTGGTAT
CGTGAGGAAGGCATTTCACATCCGCTAGATGTAACTTTGTTTCCTTTTGA
AAACCTGCGAGTAATAGTGCTGCTATCAGAATTGGGTTTCGTCGCCGGAC
TGGATAGTGGGGCAGACTTGAAAATGCTTTGGAAACAATCTTTGAAGGGT
AAATGCCGACTTGTCAACGGCCATGCAGAAGTTGTGGCCATAGTCTGCCT
CAATGGAAAGGATTCGAAAGTAATGACGCTGAGCGCGATTTCAGGGGAAG
AACTCTTTCAGAAGATATACAAGGACTTCGTCGTGCGAAGTGCAGCTATA
CATACAACATGTAAAGCATATGTATGTGTTCACCTTTTGGACGCTAATGG
CCGGAATGAAGTTGTTTCCGCAGCGAGTACTATTCTGGACGAAACACATA
TGATTCGAATCCGGTATGAAGCAGGGGGTTCTGAGCTAAATGCGTTTGAT
GCCGAGTCAACAATATGGAAGATAAACGTTGCTCATAATTCAAAGATCTT
CTCCGTCATCTATGACCAACGGCACCCATTTGAAACTACGATAAGCCCAC
CTTCTGTTCGATTAACAGGTGATCGACGGGTGTTATTCAAATATGCATAT
CAGCATGTTCTTATCGTTCTTTCGTTTGACAAAGAGAAGGAGTGTGTTTA
TTCCATGCTCATAGATGGACGCTCTGGTGAAACCTACGAGGTGATTGAAC
ATCCGAGATCAGTACCCACTTCTTTGGGAACAAAGGGAGAAAACTGGTTT
TTGTATACAACTTGGAATACAGAGTTATTGGTAAATGAAATTCATATAGT
GGATATGTATCAGCAAAAAGGACTTCATGCTTCATGGGTTCTAAAACGTC
TACAAGAATCATTTTCGAGATATTGGACTTCGCTCTCGTACTTGACTCTC
ATTCAACAGAAGGGACAAAAACCCGAAGCAAATCATGCTAATTCAACATG
TACCCCGGACGATACACTGTCCATATCAGGTCCGGAAGATCATCCTTATA
CAGTAAGATCGAGCATGGTTCTAACACACGTACCTGCTGGGATGGCCGTG
ACAAGAACTAAACTCGGTGTCACAGAACAATCAGTTTTGTTTGTTTTGGA
CTCCGGACAGAGCGCTCTTGTGTCGAAGTCAACAGTAGATGCACGACGAC
CGAAAGACATGAACTTGGCATACGCTTCGGAGTATCTGAGGAGGTATTCT
CCGTCGCTTTCGCTTCAGTCCTCGTCCTATGACAATATTTACGTGGAGGA
GAATAGAATCCAGCCAGTTGGAATTCAATCGGTGTTGTGCGCTCCTGACA
TGTCAAGGGAGAGTACAAGTCATATTGTCTTGACAGGGCTCGATATGCTT
TTTACTCAGGTACATCCTATTGGGAAGTTCGATTTTCTTGATTCTGACTT
CAATTTCTTAGCAATACTTCTCGTGATAGCCTTGCTCCTGTTTTCGTATC
TGTATAGTGAGAATCTTCTGCAAGAGACTTCCTTGTCAAGGTCATGGTAA