Ggra2923.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2923.t1
Unique Name	Ggra2923.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	428

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:503679..504962 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708697.1
PFAMs	Orn_Arg_deC_N,Orn_DAP_Arg_deC
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00299
KEGG ko	ko:K01586,ko:K01611,ko:K18408
KEGG Reaction	R00178,R00451
KEGG Pathway	ko00270,ko00300,ko00330,ko01100,ko01110,ko01120,ko01130,ko01230,map00270,map00300,map00330,map01100,map01110,map01120,map01130,map01230
KEGG Module	M00016,M00034,M00133,M00525,M00526,M00527
Evalue	3.02e-189
EggNOG OGs	COG0019@1\|root,KOG0622@2759\|Eukaryota
EC	3.6.4.13,4.1.1.20,4.1.1.50
Description	putrescine biosynthetic process from ornithine
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2923	Ggra2923	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 503679..504962 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2923.t1.start1	Ggra2923.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 503679..503681 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2923.t1.CDS1	Ggra2923.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 503679..504962 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2923.t1.exon1	Ggra2923.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 503679..504962 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2923.t1.stop1	Ggra2923.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 504960..504962 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2923.t1	Ggra2923.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 503679..504962 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:503679..504962+
coding sequence from alignment at tig00000858_pilon:503679..504962+

mRNA sequence

>Ggra2923.t1 ID=Ggra2923.t1|Name=Ggra2923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MVVAAPAVKNPTPPFSTNEEGYMTCENVRIRDVQNDMGTSPLYIYSKKQL
VDNYKAYEEALKGLPSIIGYAIKANNNLRLIEILRELGSGAVLVSGNELR
LAVKAGMDMTKTVFNGNGKSYQELVYAVKCGCLINIDSEFDLEHICEAAN
DVGKPANVLIRINPDVDPQVHPYVSTGLASSKFGIRNSHLQWFLDRIKEE
GMLSLLGVHCHLGSTIKKVDIFKDAAEIMLGFIEEIKSQGFESLKYLNIG
GGLGIDYERVGEQIPRPIDLINTIRPQLTTSGLTIIVEPGRSMVGNTAIF
VSKVIGVKTNGSKNFIVTDGSMAELIRPSLYDAYQFICLTEPGGSVETFD
VVGPVCESADFLGKNRTMPTPREGSGLAVMDAGAYCFVMASNYNMKTKPA
EILVDGDVWRIIRRAETFDDMMALYEK*

spliced messenger RNA

>Ggra2923.t1 ID=Ggra2923.t1|Name=Ggra2923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000858_pilon:503679..504962+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTAGCTGCTCCAGCTGTGAAGAATCCAACCCCACCTTTTTCAAC
GAATGAGGAGGGCTATATGACTTGTGAAAACGTTCGCATTCGGGATGTAC
AAAACGACATGGGTACTAGTCCTCTTTATATCTATTCAAAGAAGCAACTT
GTTGATAACTACAAAGCATATGAAGAAGCTTTAAAAGGCTTGCCATCAAT
TATCGGATATGCGATTAAGGCGAACAACAACCTTCGCCTTATCGAGATAC
TTAGAGAGCTGGGTTCTGGTGCCGTCCTTGTATCTGGAAATGAGCTTAGG
CTCGCGGTGAAGGCAGGAATGGATATGACGAAGACTGTGTTCAATGGAAA
TGGGAAAAGCTATCAAGAACTCGTATATGCTGTGAAATGCGGGTGCCTTA
TTAACATCGATTCTGAGTTTGACCTCGAGCACATTTGTGAAGCAGCAAAC
GACGTTGGGAAACCGGCAAACGTTTTAATCAGAATCAATCCTGATGTAGA
CCCGCAAGTGCACCCGTACGTGAGCACAGGACTAGCCAGTAGCAAGTTTG
GCATTCGAAATTCGCACCTGCAATGGTTTTTGGATAGGATCAAAGAGGAA
GGCATGCTCTCCCTGCTTGGGGTTCATTGTCATCTGGGAAGTACGATTAA
GAAGGTGGACATTTTCAAAGACGCCGCTGAAATAATGCTGGGATTTATAG
AGGAGATCAAGAGTCAAGGTTTCGAAAGTCTTAAATACCTCAATATAGGT
GGTGGATTGGGTATTGACTATGAAAGAGTTGGAGAACAGATTCCGCGCCC
CATCGACCTGATCAATACTATTCGTCCTCAGCTCACCACGTCTGGCTTGA
CAATTATTGTTGAGCCGGGCAGGTCAATGGTTGGGAACACAGCCATCTTT
GTCAGCAAAGTCATCGGAGTGAAGACGAATGGTTCCAAGAATTTTATAGT
AACAGACGGCAGTATGGCTGAACTTATTCGACCCAGTCTCTACGATGCAT
ATCAGTTTATATGTCTTACTGAGCCAGGAGGCTCGGTTGAAACCTTCGAT
GTTGTTGGACCGGTCTGCGAGAGTGCAGACTTTTTGGGAAAAAACAGGAC
CATGCCCACCCCGAGAGAGGGGTCTGGTCTAGCCGTAATGGATGCTGGTG
CATACTGCTTTGTTATGGCTTCGAATTATAACATGAAGACCAAGCCTGCC
GAGATTCTAGTTGATGGCGATGTGTGGCGTATCATTCGGCGTGCCGAGAC
ATTTGATGACATGATGGCCCTCTATGAGAAGTAA

protein sequence of Ggra2923.t1

>Ggra2923.t1 ID=Ggra2923.t1|Name=Ggra2923.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MVVAAPAVKNPTPPFSTNEEGYMTCENVRIRDVQNDMGTSPLYIYSKKQL
VDNYKAYEEALKGLPSIIGYAIKANNNLRLIEILRELGSGAVLVSGNELR
LAVKAGMDMTKTVFNGNGKSYQELVYAVKCGCLINIDSEFDLEHICEAAN
DVGKPANVLIRINPDVDPQVHPYVSTGLASSKFGIRNSHLQWFLDRIKEE
GMLSLLGVHCHLGSTIKKVDIFKDAAEIMLGFIEEIKSQGFESLKYLNIG
GGLGIDYERVGEQIPRPIDLINTIRPQLTTSGLTIIVEPGRSMVGNTAIF
VSKVIGVKTNGSKNFIVTDGSMAELIRPSLYDAYQFICLTEPGGSVETFD
VVGPVCESADFLGKNRTMPTPREGSGLAVMDAGAYCFVMASNYNMKTKPA
EILVDGDVWRIIRRAETFDDMMALYEK*

mRNA from alignment at tig00000858_pilon:503679..504962+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2923.t1 ID=Ggra2923.t1|Name=Ggra2923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000858_pilon:503679..504962+ (Gracilaria gracilis GNS1m male)
ATGGTTGTAGCTGCTCCAGCTGTGAAGAATCCAACCCCACCTTTTTCAAC
GAATGAGGAGGGCTATATGACTTGTGAAAACGTTCGCATTCGGGATGTAC
AAAACGACATGGGTACTAGTCCTCTTTATATCTATTCAAAGAAGCAACTT
GTTGATAACTACAAAGCATATGAAGAAGCTTTAAAAGGCTTGCCATCAAT
TATCGGATATGCGATTAAGGCGAACAACAACCTTCGCCTTATCGAGATAC
TTAGAGAGCTGGGTTCTGGTGCCGTCCTTGTATCTGGAAATGAGCTTAGG
CTCGCGGTGAAGGCAGGAATGGATATGACGAAGACTGTGTTCAATGGAAA
TGGGAAAAGCTATCAAGAACTCGTATATGCTGTGAAATGCGGGTGCCTTA
TTAACATCGATTCTGAGTTTGACCTCGAGCACATTTGTGAAGCAGCAAAC
GACGTTGGGAAACCGGCAAACGTTTTAATCAGAATCAATCCTGATGTAGA
CCCGCAAGTGCACCCGTACGTGAGCACAGGACTAGCCAGTAGCAAGTTTG
GCATTCGAAATTCGCACCTGCAATGGTTTTTGGATAGGATCAAAGAGGAA
GGCATGCTCTCCCTGCTTGGGGTTCATTGTCATCTGGGAAGTACGATTAA
GAAGGTGGACATTTTCAAAGACGCCGCTGAAATAATGCTGGGATTTATAG
AGGAGATCAAGAGTCAAGGTTTCGAAAGTCTTAAATACCTCAATATAGGT
GGTGGATTGGGTATTGACTATGAAAGAGTTGGAGAACAGATTCCGCGCCC
CATCGACCTGATCAATACTATTCGTCCTCAGCTCACCACGTCTGGCTTGA
CAATTATTGTTGAGCCGGGCAGGTCAATGGTTGGGAACACAGCCATCTTT
GTCAGCAAAGTCATCGGAGTGAAGACGAATGGTTCCAAGAATTTTATAGT
AACAGACGGCAGTATGGCTGAACTTATTCGACCCAGTCTCTACGATGCAT
ATCAGTTTATATGTCTTACTGAGCCAGGAGGCTCGGTTGAAACCTTCGAT
GTTGTTGGACCGGTCTGCGAGAGTGCAGACTTTTTGGGAAAAAACAGGAC
CATGCCCACCCCGAGAGAGGGGTCTGGTCTAGCCGTAATGGATGCTGGTG
CATACTGCTTTGTTATGGCTTCGAATTATAACATGAAGACCAAGCCTGCC
GAGATTCTAGTTGATGGCGATGTGTGGCGTATCATTCGGCGTGCCGAGAC
ATTTGATGACATGATGGCCCTCTATGAGAAGTAA

Coding sequence (CDS) from alignment at tig00000858_pilon:503679..504962+

>Ggra2923.t1 ID=Ggra2923.t1|Name=Ggra2923.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000858_pilon:503679..504962+ (Gracilaria gracilis GNS1m male)
ATGGTTGTAGCTGCTCCAGCTGTGAAGAATCCAACCCCACCTTTTTCAAC
GAATGAGGAGGGCTATATGACTTGTGAAAACGTTCGCATTCGGGATGTAC
AAAACGACATGGGTACTAGTCCTCTTTATATCTATTCAAAGAAGCAACTT
GTTGATAACTACAAAGCATATGAAGAAGCTTTAAAAGGCTTGCCATCAAT
TATCGGATATGCGATTAAGGCGAACAACAACCTTCGCCTTATCGAGATAC
TTAGAGAGCTGGGTTCTGGTGCCGTCCTTGTATCTGGAAATGAGCTTAGG
CTCGCGGTGAAGGCAGGAATGGATATGACGAAGACTGTGTTCAATGGAAA
TGGGAAAAGCTATCAAGAACTCGTATATGCTGTGAAATGCGGGTGCCTTA
TTAACATCGATTCTGAGTTTGACCTCGAGCACATTTGTGAAGCAGCAAAC
GACGTTGGGAAACCGGCAAACGTTTTAATCAGAATCAATCCTGATGTAGA
CCCGCAAGTGCACCCGTACGTGAGCACAGGACTAGCCAGTAGCAAGTTTG
GCATTCGAAATTCGCACCTGCAATGGTTTTTGGATAGGATCAAAGAGGAA
GGCATGCTCTCCCTGCTTGGGGTTCATTGTCATCTGGGAAGTACGATTAA
GAAGGTGGACATTTTCAAAGACGCCGCTGAAATAATGCTGGGATTTATAG
AGGAGATCAAGAGTCAAGGTTTCGAAAGTCTTAAATACCTCAATATAGGT
GGTGGATTGGGTATTGACTATGAAAGAGTTGGAGAACAGATTCCGCGCCC
CATCGACCTGATCAATACTATTCGTCCTCAGCTCACCACGTCTGGCTTGA
CAATTATTGTTGAGCCGGGCAGGTCAATGGTTGGGAACACAGCCATCTTT
GTCAGCAAAGTCATCGGAGTGAAGACGAATGGTTCCAAGAATTTTATAGT
AACAGACGGCAGTATGGCTGAACTTATTCGACCCAGTCTCTACGATGCAT
ATCAGTTTATATGTCTTACTGAGCCAGGAGGCTCGGTTGAAACCTTCGAT
GTTGTTGGACCGGTCTGCGAGAGTGCAGACTTTTTGGGAAAAAACAGGAC
CATGCCCACCCCGAGAGAGGGGTCTGGTCTAGCCGTAATGGATGCTGGTG
CATACTGCTTTGTTATGGCTTCGAATTATAACATGAAGACCAAGCCTGCC
GAGATTCTAGTTGATGGCGATGTGTGGCGTATCATTCGGCGTGCCGAGAC
ATTTGATGACATGATGGCCCTCTATGAGAAGTAA