Ggra2921.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2921.t1
Unique Name	Ggra2921.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:496755..498446 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706023.1
Preferred name	ASNB
PFAMs	Asn_synthase,GATase_7,NAD_synthase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00010
KEGG ko	ko:K01953
KEGG Reaction	R00578
KEGG Pathway	ko00250,ko01100,ko01110,map00250,map01100,map01110
Evalue	1.04e-278
EggNOG OGs	COG0367@1\|root,KOG0571@2759\|Eukaryota
EC	6.3.5.4
Description	L-asparagine biosynthetic process
COG category	E
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2921	Ggra2921	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 496755..498446 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2921.t1.start1	Ggra2921.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 496755..496757 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2921.t1.CDS1	Ggra2921.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 496755..498446 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2921.t1.exon1	Ggra2921.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 496755..498446 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2921.t1.stop1	Ggra2921.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 498444..498446 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2921.t1	Ggra2921.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 496755..498446 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:496755..498446+
coding sequence from alignment at tig00000858_pilon:496755..498446+

mRNA sequence

>Ggra2921.t1 ID=Ggra2921.t1|Name=Ggra2921.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp
MCGIFAVLGSSLSRDELVQLTISATNKLQHRGPDDLQTFVSEDGWAALGF
ARLQINDPEHGAQPMHISDDTVWAVTNGEIYNHRLLRSAELKDVPLRSNS
DCEVIAPLYEKYATSLYPHDLSHFYNTLKGVFASVIVDLARKQFVAARDP
IGVRAMYLGRSSDGAVWIASEAKAILEHCQMVTPFLPGCYYAAKRGFEKH
SDFAPYYNPLFYNPGWLPTERVNLQKLHDSFKNACVRRLMSDVPVGVFIS
GGLDSSLVASVIKKALPANYVFHSFSCGLEGSPDLQAAQRVADFLGTEHH
VLTFTVEDGIRALEQVVYHLETYDITTIRASTPMFLLSKLVKQYVKVVLS
GEGADEVFGGYLYFHNADSEQAFYEETVRRVKLLYTSDVLRGDRSTAAQS
LELRVPFLDRDFLDVAMCYSAKDKLTDKGKRIEKWAIRHAFSEQFCGEQY
LPEDILMRPKEQFSDGVGYNWIDGLKDYCDDQVTDKMMREAPQTFKHDPP
ATKEAYYYRALFEKTFGKYEGAQGLREGVHKWVPLWSDSDDPSGRAQKFH
AAAYVKTMNGTSH*

spliced messenger RNA

>Ggra2921.t1 ID=Ggra2921.t1|Name=Ggra2921.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000858_pilon:496755..498446+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGAATCTTCGCAGTTCTCGGAAGCTCCCTATCTCGTGATGAGCT
GGTGCAGCTCACCATCTCTGCCACCAACAAGCTGCAGCACCGCGGTCCAG
ACGATCTGCAGACCTTCGTCAGTGAGGACGGCTGGGCCGCGTTAGGCTTC
GCCCGTCTTCAGATCAACGACCCTGAGCACGGAGCGCAGCCCATGCATAT
CTCCGACGACACCGTTTGGGCGGTCACCAACGGCGAGATCTACAACCATC
GCCTCCTTCGCTCAGCCGAGCTCAAGGACGTCCCGCTTCGATCCAACTCC
GACTGTGAGGTCATTGCCCCGCTCTATGAGAAGTACGCCACCTCCCTGTA
CCCGCATGACCTCTCCCATTTCTACAACACCCTCAAGGGCGTCTTTGCCT
CCGTAATTGTTGATCTTGCTCGCAAGCAGTTCGTCGCTGCCAGGGATCCC
ATTGGCGTGCGAGCCATGTACCTTGGCCGCTCCTCGGATGGAGCCGTTTG
GATTGCTTCAGAGGCAAAGGCTATTCTTGAACACTGCCAGATGGTCACTC
CTTTCCTTCCGGGATGTTACTATGCTGCCAAGCGTGGTTTCGAGAAGCAC
TCCGATTTTGCTCCATACTATAACCCGCTGTTCTACAACCCCGGATGGCT
TCCCACCGAGAGAGTCAACCTGCAAAAACTACACGACTCGTTCAAGAACG
CTTGTGTTCGCCGTCTTATGTCCGATGTGCCGGTTGGTGTCTTCATCTCC
GGCGGATTGGACTCCTCACTTGTCGCCAGTGTGATTAAGAAAGCCCTTCC
TGCCAACTATGTGTTCCACAGTTTCTCGTGCGGCCTGGAGGGGTCTCCCG
ATCTCCAAGCCGCTCAAAGAGTCGCTGACTTCTTGGGCACCGAGCATCAT
GTTCTTACCTTTACTGTGGAGGATGGAATCAGGGCATTGGAGCAGGTAGT
GTACCATTTGGAGACGTACGACATCACCACCATTCGAGCATCCACTCCTA
TGTTCCTGCTTTCAAAGCTTGTCAAACAATATGTCAAGGTCGTTTTGAGT
GGAGAGGGAGCCGATGAGGTGTTCGGTGGCTATCTGTACTTCCATAACGC
CGACTCCGAACAGGCCTTCTATGAGGAAACTGTCCGCCGTGTCAAACTTT
TGTATACATCGGACGTTCTACGCGGCGATCGATCTACAGCAGCTCAAAGT
TTAGAGCTTAGAGTACCCTTCCTTGATCGTGACTTTTTGGATGTCGCCAT
GTGTTACTCCGCAAAGGATAAGCTCACCGACAAAGGAAAGCGCATTGAAA
AGTGGGCCATTCGCCATGCCTTCTCTGAGCAATTTTGTGGAGAGCAGTAC
TTGCCGGAGGATATTCTCATGAGACCAAAGGAGCAGTTCTCAGACGGTGT
GGGCTACAACTGGATTGATGGGCTCAAAGATTATTGTGATGATCAAGTGA
CCGATAAGATGATGCGAGAGGCACCGCAGACTTTCAAACATGATCCCCCG
GCCACCAAGGAAGCTTATTATTATCGTGCATTGTTTGAAAAGACCTTTGG
CAAGTATGAGGGTGCTCAAGGTTTGCGAGAGGGTGTGCACAAATGGGTCC
CTCTGTGGTCAGACAGTGATGATCCAAGCGGACGTGCTCAAAAGTTCCAT
GCCGCTGCTTACGTCAAGACTATGAACGGGACTTCTCATTAA

protein sequence of Ggra2921.t1

>Ggra2921.t1 ID=Ggra2921.t1|Name=Ggra2921.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MCGIFAVLGSSLSRDELVQLTISATNKLQHRGPDDLQTFVSEDGWAALGF
ARLQINDPEHGAQPMHISDDTVWAVTNGEIYNHRLLRSAELKDVPLRSNS
DCEVIAPLYEKYATSLYPHDLSHFYNTLKGVFASVIVDLARKQFVAARDP
IGVRAMYLGRSSDGAVWIASEAKAILEHCQMVTPFLPGCYYAAKRGFEKH
SDFAPYYNPLFYNPGWLPTERVNLQKLHDSFKNACVRRLMSDVPVGVFIS
GGLDSSLVASVIKKALPANYVFHSFSCGLEGSPDLQAAQRVADFLGTEHH
VLTFTVEDGIRALEQVVYHLETYDITTIRASTPMFLLSKLVKQYVKVVLS
GEGADEVFGGYLYFHNADSEQAFYEETVRRVKLLYTSDVLRGDRSTAAQS
LELRVPFLDRDFLDVAMCYSAKDKLTDKGKRIEKWAIRHAFSEQFCGEQY
LPEDILMRPKEQFSDGVGYNWIDGLKDYCDDQVTDKMMREAPQTFKHDPP
ATKEAYYYRALFEKTFGKYEGAQGLREGVHKWVPLWSDSDDPSGRAQKFH
AAAYVKTMNGTSH*

mRNA from alignment at tig00000858_pilon:496755..498446+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2921.t1 ID=Ggra2921.t1|Name=Ggra2921.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000858_pilon:496755..498446+ (Gracilaria gracilis GNS1m male)
ATGTGCGGAATCTTCGCAGTTCTCGGAAGCTCCCTATCTCGTGATGAGCT
GGTGCAGCTCACCATCTCTGCCACCAACAAGCTGCAGCACCGCGGTCCAG
ACGATCTGCAGACCTTCGTCAGTGAGGACGGCTGGGCCGCGTTAGGCTTC
GCCCGTCTTCAGATCAACGACCCTGAGCACGGAGCGCAGCCCATGCATAT
CTCCGACGACACCGTTTGGGCGGTCACCAACGGCGAGATCTACAACCATC
GCCTCCTTCGCTCAGCCGAGCTCAAGGACGTCCCGCTTCGATCCAACTCC
GACTGTGAGGTCATTGCCCCGCTCTATGAGAAGTACGCCACCTCCCTGTA
CCCGCATGACCTCTCCCATTTCTACAACACCCTCAAGGGCGTCTTTGCCT
CCGTAATTGTTGATCTTGCTCGCAAGCAGTTCGTCGCTGCCAGGGATCCC
ATTGGCGTGCGAGCCATGTACCTTGGCCGCTCCTCGGATGGAGCCGTTTG
GATTGCTTCAGAGGCAAAGGCTATTCTTGAACACTGCCAGATGGTCACTC
CTTTCCTTCCGGGATGTTACTATGCTGCCAAGCGTGGTTTCGAGAAGCAC
TCCGATTTTGCTCCATACTATAACCCGCTGTTCTACAACCCCGGATGGCT
TCCCACCGAGAGAGTCAACCTGCAAAAACTACACGACTCGTTCAAGAACG
CTTGTGTTCGCCGTCTTATGTCCGATGTGCCGGTTGGTGTCTTCATCTCC
GGCGGATTGGACTCCTCACTTGTCGCCAGTGTGATTAAGAAAGCCCTTCC
TGCCAACTATGTGTTCCACAGTTTCTCGTGCGGCCTGGAGGGGTCTCCCG
ATCTCCAAGCCGCTCAAAGAGTCGCTGACTTCTTGGGCACCGAGCATCAT
GTTCTTACCTTTACTGTGGAGGATGGAATCAGGGCATTGGAGCAGGTAGT
GTACCATTTGGAGACGTACGACATCACCACCATTCGAGCATCCACTCCTA
TGTTCCTGCTTTCAAAGCTTGTCAAACAATATGTCAAGGTCGTTTTGAGT
GGAGAGGGAGCCGATGAGGTGTTCGGTGGCTATCTGTACTTCCATAACGC
CGACTCCGAACAGGCCTTCTATGAGGAAACTGTCCGCCGTGTCAAACTTT
TGTATACATCGGACGTTCTACGCGGCGATCGATCTACAGCAGCTCAAAGT
TTAGAGCTTAGAGTACCCTTCCTTGATCGTGACTTTTTGGATGTCGCCAT
GTGTTACTCCGCAAAGGATAAGCTCACCGACAAAGGAAAGCGCATTGAAA
AGTGGGCCATTCGCCATGCCTTCTCTGAGCAATTTTGTGGAGAGCAGTAC
TTGCCGGAGGATATTCTCATGAGACCAAAGGAGCAGTTCTCAGACGGTGT
GGGCTACAACTGGATTGATGGGCTCAAAGATTATTGTGATGATCAAGTGA
CCGATAAGATGATGCGAGAGGCACCGCAGACTTTCAAACATGATCCCCCG
GCCACCAAGGAAGCTTATTATTATCGTGCATTGTTTGAAAAGACCTTTGG
CAAGTATGAGGGTGCTCAAGGTTTGCGAGAGGGTGTGCACAAATGGGTCC
CTCTGTGGTCAGACAGTGATGATCCAAGCGGACGTGCTCAAAAGTTCCAT
GCCGCTGCTTACGTCAAGACTATGAACGGGACTTCTCATTAA

Coding sequence (CDS) from alignment at tig00000858_pilon:496755..498446+

>Ggra2921.t1 ID=Ggra2921.t1|Name=Ggra2921.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1692bp|location=Sequence derived from alignment at tig00000858_pilon:496755..498446+ (Gracilaria gracilis GNS1m male)
ATGTGCGGAATCTTCGCAGTTCTCGGAAGCTCCCTATCTCGTGATGAGCT
GGTGCAGCTCACCATCTCTGCCACCAACAAGCTGCAGCACCGCGGTCCAG
ACGATCTGCAGACCTTCGTCAGTGAGGACGGCTGGGCCGCGTTAGGCTTC
GCCCGTCTTCAGATCAACGACCCTGAGCACGGAGCGCAGCCCATGCATAT
CTCCGACGACACCGTTTGGGCGGTCACCAACGGCGAGATCTACAACCATC
GCCTCCTTCGCTCAGCCGAGCTCAAGGACGTCCCGCTTCGATCCAACTCC
GACTGTGAGGTCATTGCCCCGCTCTATGAGAAGTACGCCACCTCCCTGTA
CCCGCATGACCTCTCCCATTTCTACAACACCCTCAAGGGCGTCTTTGCCT
CCGTAATTGTTGATCTTGCTCGCAAGCAGTTCGTCGCTGCCAGGGATCCC
ATTGGCGTGCGAGCCATGTACCTTGGCCGCTCCTCGGATGGAGCCGTTTG
GATTGCTTCAGAGGCAAAGGCTATTCTTGAACACTGCCAGATGGTCACTC
CTTTCCTTCCGGGATGTTACTATGCTGCCAAGCGTGGTTTCGAGAAGCAC
TCCGATTTTGCTCCATACTATAACCCGCTGTTCTACAACCCCGGATGGCT
TCCCACCGAGAGAGTCAACCTGCAAAAACTACACGACTCGTTCAAGAACG
CTTGTGTTCGCCGTCTTATGTCCGATGTGCCGGTTGGTGTCTTCATCTCC
GGCGGATTGGACTCCTCACTTGTCGCCAGTGTGATTAAGAAAGCCCTTCC
TGCCAACTATGTGTTCCACAGTTTCTCGTGCGGCCTGGAGGGGTCTCCCG
ATCTCCAAGCCGCTCAAAGAGTCGCTGACTTCTTGGGCACCGAGCATCAT
GTTCTTACCTTTACTGTGGAGGATGGAATCAGGGCATTGGAGCAGGTAGT
GTACCATTTGGAGACGTACGACATCACCACCATTCGAGCATCCACTCCTA
TGTTCCTGCTTTCAAAGCTTGTCAAACAATATGTCAAGGTCGTTTTGAGT
GGAGAGGGAGCCGATGAGGTGTTCGGTGGCTATCTGTACTTCCATAACGC
CGACTCCGAACAGGCCTTCTATGAGGAAACTGTCCGCCGTGTCAAACTTT
TGTATACATCGGACGTTCTACGCGGCGATCGATCTACAGCAGCTCAAAGT
TTAGAGCTTAGAGTACCCTTCCTTGATCGTGACTTTTTGGATGTCGCCAT
GTGTTACTCCGCAAAGGATAAGCTCACCGACAAAGGAAAGCGCATTGAAA
AGTGGGCCATTCGCCATGCCTTCTCTGAGCAATTTTGTGGAGAGCAGTAC
TTGCCGGAGGATATTCTCATGAGACCAAAGGAGCAGTTCTCAGACGGTGT
GGGCTACAACTGGATTGATGGGCTCAAAGATTATTGTGATGATCAAGTGA
CCGATAAGATGATGCGAGAGGCACCGCAGACTTTCAAACATGATCCCCCG
GCCACCAAGGAAGCTTATTATTATCGTGCATTGTTTGAAAAGACCTTTGG
CAAGTATGAGGGTGCTCAAGGTTTGCGAGAGGGTGTGCACAAATGGGTCC
CTCTGTGGTCAGACAGTGATGATCCAAGCGGACGTGCTCAAAAGTTCCAT
GCCGCTGCTTACGTCAAGACTATGAACGGGACTTCTCATTAA