Ggra2896.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2896.t1
Unique NameGgra2896.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:324229..325209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD12826
Max annot lvl2903.EOD12826|-
Evalue9.42e-05
EggNOG OGs2F143@1|root,2T264@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2896Ggra2896Gracilaria gracilis GNS1m malegenetig00000858_pilon 324229..325209 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2896.t1.stop1Ggra2896.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 324229..324231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2896.t1.CDS1Ggra2896.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 324229..325209 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2896.t1.exon1Ggra2896.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 324229..325209 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2896.t1.start1Ggra2896.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 325207..325209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2896.t1Ggra2896.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 324229..325209 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2896.t1 ID=Ggra2896.t1|Name=Ggra2896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp
MSQSLNPPSQLSEKPRNACLPKLDGMHFSAMLQSARLAANSISQSYPQVT
ASNIHHAYGSQDGQLKLLHLSACMYSYWHGAPSGTSVFEIAGQQLTCYLR
QPFREQCASWDTMLLSSSVSDALYVIEEGDDGSLVADHTMTKFYRLLGMK
VSPATALRRQNIELPVATCFTALPFRGHLVYDGIIYVAQGAKLSGAKEKT
LLERSRAAKAAGNVSTGFHIKAPPKKASFPAVDVKNMGTKQLKEFVLQRG
GSISDCVEKSDLVSRALSVSDKPAQAEGSQKELNKEQKAQVERLKKLDKM
EEMAVFRRWGYTEESKSAHMITILHG*
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spliced messenger RNA

>Ggra2896.t1 ID=Ggra2896.t1|Name=Ggra2896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000858_pilon:324229..325209- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAATCGTTAAACCCGCCGTCGCAGCTGTCCGAAAAGCCGCGCAA
CGCCTGTCTCCCCAAGCTGGACGGCATGCATTTCTCCGCCATGTTGCAGA
GTGCCCGATTGGCCGCCAACTCCATATCGCAGTCGTACCCACAAGTAACC
GCGTCGAACATCCACCACGCATACGGCAGCCAGGACGGCCAGCTCAAGTT
GCTACATCTGTCCGCGTGTATGTACAGCTACTGGCACGGCGCGCCGTCCG
GTACGTCTGTGTTCGAGATTGCCGGGCAGCAGTTGACGTGCTACCTGCGC
CAGCCGTTTCGAGAGCAGTGCGCTTCGTGGGACACTATGCTTCTCAGCTC
GTCCGTGAGTGACGCCCTGTATGTCATTGAGGAAGGTGACGATGGTTCCT
TGGTTGCTGATCATACCATGACCAAGTTCTATCGCTTGTTGGGCATGAAG
GTATCGCCGGCTACTGCTCTACGTCGACAAAACATTGAGCTTCCGGTCGC
TACTTGTTTCACTGCACTGCCGTTTCGTGGGCATCTTGTGTATGATGGCA
TCATTTACGTCGCTCAGGGTGCAAAGCTCAGCGGTGCGAAGGAGAAGACA
TTGCTTGAGCGATCCCGTGCTGCCAAGGCTGCGGGTAATGTCAGCACTGG
GTTTCATATCAAAGCTCCACCGAAAAAGGCTTCTTTTCCAGCGGTTGATG
TGAAGAATATGGGTACGAAGCAACTCAAGGAATTTGTGCTCCAAAGAGGT
GGTTCTATATCCGATTGCGTCGAGAAGTCTGATTTAGTGTCGCGAGCTCT
GTCGGTGTCTGACAAACCTGCACAGGCGGAGGGGAGCCAGAAGGAGCTCA
ACAAAGAACAAAAGGCTCAAGTGGAACGTTTGAAGAAGCTTGACAAAATG
GAAGAGATGGCCGTTTTCAGGCGCTGGGGATACACAGAGGAGAGCAAAAG
CGCACATATGATCACCATCTTGCATGGCTGA
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protein sequence of Ggra2896.t1

>Ggra2896.t1 ID=Ggra2896.t1|Name=Ggra2896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=327bp
MSQSLNPPSQLSEKPRNACLPKLDGMHFSAMLQSARLAANSISQSYPQVT
ASNIHHAYGSQDGQLKLLHLSACMYSYWHGAPSGTSVFEIAGQQLTCYLR
QPFREQCASWDTMLLSSSVSDALYVIEEGDDGSLVADHTMTKFYRLLGMK
VSPATALRRQNIELPVATCFTALPFRGHLVYDGIIYVAQGAKLSGAKEKT
LLERSRAAKAAGNVSTGFHIKAPPKKASFPAVDVKNMGTKQLKEFVLQRG
GSISDCVEKSDLVSRALSVSDKPAQAEGSQKELNKEQKAQVERLKKLDKM
EEMAVFRRWGYTEESKSAHMITILHG*
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mRNA from alignment at tig00000858_pilon:324229..325209-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2896.t1 ID=Ggra2896.t1|Name=Ggra2896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000858_pilon:324229..325209- (Gracilaria gracilis GNS1m male)
ATGTCGCAATCGTTAAACCCGCCGTCGCAGCTGTCCGAAAAGCCGCGCAA
CGCCTGTCTCCCCAAGCTGGACGGCATGCATTTCTCCGCCATGTTGCAGA
GTGCCCGATTGGCCGCCAACTCCATATCGCAGTCGTACCCACAAGTAACC
GCGTCGAACATCCACCACGCATACGGCAGCCAGGACGGCCAGCTCAAGTT
GCTACATCTGTCCGCGTGTATGTACAGCTACTGGCACGGCGCGCCGTCCG
GTACGTCTGTGTTCGAGATTGCCGGGCAGCAGTTGACGTGCTACCTGCGC
CAGCCGTTTCGAGAGCAGTGCGCTTCGTGGGACACTATGCTTCTCAGCTC
GTCCGTGAGTGACGCCCTGTATGTCATTGAGGAAGGTGACGATGGTTCCT
TGGTTGCTGATCATACCATGACCAAGTTCTATCGCTTGTTGGGCATGAAG
GTATCGCCGGCTACTGCTCTACGTCGACAAAACATTGAGCTTCCGGTCGC
TACTTGTTTCACTGCACTGCCGTTTCGTGGGCATCTTGTGTATGATGGCA
TCATTTACGTCGCTCAGGGTGCAAAGCTCAGCGGTGCGAAGGAGAAGACA
TTGCTTGAGCGATCCCGTGCTGCCAAGGCTGCGGGTAATGTCAGCACTGG
GTTTCATATCAAAGCTCCACCGAAAAAGGCTTCTTTTCCAGCGGTTGATG
TGAAGAATATGGGTACGAAGCAACTCAAGGAATTTGTGCTCCAAAGAGGT
GGTTCTATATCCGATTGCGTCGAGAAGTCTGATTTAGTGTCGCGAGCTCT
GTCGGTGTCTGACAAACCTGCACAGGCGGAGGGGAGCCAGAAGGAGCTCA
ACAAAGAACAAAAGGCTCAAGTGGAACGTTTGAAGAAGCTTGACAAAATG
GAAGAGATGGCCGTTTTCAGGCGCTGGGGATACACAGAGGAGAGCAAAAG
CGCACATATGATCACCATCTTGCATGGCTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:324229..325209-

>Ggra2896.t1 ID=Ggra2896.t1|Name=Ggra2896.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000858_pilon:324229..325209- (Gracilaria gracilis GNS1m male)
ATGTCGCAATCGTTAAACCCGCCGTCGCAGCTGTCCGAAAAGCCGCGCAA
CGCCTGTCTCCCCAAGCTGGACGGCATGCATTTCTCCGCCATGTTGCAGA
GTGCCCGATTGGCCGCCAACTCCATATCGCAGTCGTACCCACAAGTAACC
GCGTCGAACATCCACCACGCATACGGCAGCCAGGACGGCCAGCTCAAGTT
GCTACATCTGTCCGCGTGTATGTACAGCTACTGGCACGGCGCGCCGTCCG
GTACGTCTGTGTTCGAGATTGCCGGGCAGCAGTTGACGTGCTACCTGCGC
CAGCCGTTTCGAGAGCAGTGCGCTTCGTGGGACACTATGCTTCTCAGCTC
GTCCGTGAGTGACGCCCTGTATGTCATTGAGGAAGGTGACGATGGTTCCT
TGGTTGCTGATCATACCATGACCAAGTTCTATCGCTTGTTGGGCATGAAG
GTATCGCCGGCTACTGCTCTACGTCGACAAAACATTGAGCTTCCGGTCGC
TACTTGTTTCACTGCACTGCCGTTTCGTGGGCATCTTGTGTATGATGGCA
TCATTTACGTCGCTCAGGGTGCAAAGCTCAGCGGTGCGAAGGAGAAGACA
TTGCTTGAGCGATCCCGTGCTGCCAAGGCTGCGGGTAATGTCAGCACTGG
GTTTCATATCAAAGCTCCACCGAAAAAGGCTTCTTTTCCAGCGGTTGATG
TGAAGAATATGGGTACGAAGCAACTCAAGGAATTTGTGCTCCAAAGAGGT
GGTTCTATATCCGATTGCGTCGAGAAGTCTGATTTAGTGTCGCGAGCTCT
GTCGGTGTCTGACAAACCTGCACAGGCGGAGGGGAGCCAGAAGGAGCTCA
ACAAAGAACAAAAGGCTCAAGTGGAACGTTTGAAGAAGCTTGACAAAATG
GAAGAGATGGCCGTTTTCAGGCGCTGGGGATACACAGAGGAGAGCAAAAG
CGCACATATGATCACCATCTTGCATGGCTGA
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