Ggra289.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra289.t1
Unique NameGgra289.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000112_piloncontigtig00000112_pilon:59157..59603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra289Ggra289Gracilaria gracilis GNS1m malegenetig00000112_pilon 59157..59603 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra289.t1.start1Ggra289.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000112_pilon 59157..59159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra289.t1.CDS1Ggra289.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000112_pilon 59157..59603 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra289.t1.exon1Ggra289.t1.exon1Gracilaria gracilis GNS1m maleexontig00000112_pilon 59157..59603 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra289.t1.stop1Ggra289.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000112_pilon 59601..59603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra289.t1Ggra289.t1Gracilaria gracilis GNS1m malepolypeptidetig00000112_pilon 59157..59603 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra289.t1 ID=Ggra289.t1|Name=Ggra289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=149bp
MEQRVICSAMGPMTVFTAYQKFIHEILGLSKVYLVLKEKQTEHETRHGES
FTIKHTGAMNTPLETNLNFKPLEDFADRSSNLKVMQAILQCRERAIEYFI
EHTEAFLSESKALYPLAGLIMGHLTSEANISATSIFDCSTPLTGTMNV*
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spliced messenger RNA

>Ggra289.t1 ID=Ggra289.t1|Name=Ggra289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00000112_pilon:59157..59603+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAACGTGTAATCTGTTCCGCTATGGGGCCCATGACAGTCTTTAC
TGCGTATCAGAAATTCATCCACGAGATATTAGGACTTAGTAAGGTCTATC
TCGTTCTGAAAGAAAAGCAGACTGAGCACGAAACCAGGCACGGCGAGTCA
TTCACCATCAAGCACACCGGTGCCATGAACACGCCGTTAGAGACCAACCT
CAACTTCAAGCCTTTGGAGGATTTCGCGGACCGCTCCAGTAATCTTAAAG
TCATGCAAGCCATTCTCCAGTGTCGCGAGCGCGCCATCGAATATTTCATC
GAGCATACCGAAGCGTTTTTAAGCGAATCCAAGGCACTATACCCTCTTGC
CGGGCTAATTATGGGACATTTGACTTCAGAAGCAAACATTTCCGCCACTA
GCATATTCGATTGCTCTACACCTTTGACGGGAACCATGAATGTGTAA
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protein sequence of Ggra289.t1

>Ggra289.t1 ID=Ggra289.t1|Name=Ggra289.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=149bp
MEQRVICSAMGPMTVFTAYQKFIHEILGLSKVYLVLKEKQTEHETRHGES
FTIKHTGAMNTPLETNLNFKPLEDFADRSSNLKVMQAILQCRERAIEYFI
EHTEAFLSESKALYPLAGLIMGHLTSEANISATSIFDCSTPLTGTMNV*
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mRNA from alignment at tig00000112_pilon:59157..59603+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra289.t1 ID=Ggra289.t1|Name=Ggra289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00000112_pilon:59157..59603+ (Gracilaria gracilis GNS1m male)
ATGGAGCAACGTGTAATCTGTTCCGCTATGGGGCCCATGACAGTCTTTAC
TGCGTATCAGAAATTCATCCACGAGATATTAGGACTTAGTAAGGTCTATC
TCGTTCTGAAAGAAAAGCAGACTGAGCACGAAACCAGGCACGGCGAGTCA
TTCACCATCAAGCACACCGGTGCCATGAACACGCCGTTAGAGACCAACCT
CAACTTCAAGCCTTTGGAGGATTTCGCGGACCGCTCCAGTAATCTTAAAG
TCATGCAAGCCATTCTCCAGTGTCGCGAGCGCGCCATCGAATATTTCATC
GAGCATACCGAAGCGTTTTTAAGCGAATCCAAGGCACTATACCCTCTTGC
CGGGCTAATTATGGGACATTTGACTTCAGAAGCAAACATTTCCGCCACTA
GCATATTCGATTGCTCTACACCTTTGACGGGAACCATGAATGTGTAA
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Coding sequence (CDS) from alignment at tig00000112_pilon:59157..59603+

>Ggra289.t1 ID=Ggra289.t1|Name=Ggra289.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=447bp|location=Sequence derived from alignment at tig00000112_pilon:59157..59603+ (Gracilaria gracilis GNS1m male)
ATGGAGCAACGTGTAATCTGTTCCGCTATGGGGCCCATGACAGTCTTTAC
TGCGTATCAGAAATTCATCCACGAGATATTAGGACTTAGTAAGGTCTATC
TCGTTCTGAAAGAAAAGCAGACTGAGCACGAAACCAGGCACGGCGAGTCA
TTCACCATCAAGCACACCGGTGCCATGAACACGCCGTTAGAGACCAACCT
CAACTTCAAGCCTTTGGAGGATTTCGCGGACCGCTCCAGTAATCTTAAAG
TCATGCAAGCCATTCTCCAGTGTCGCGAGCGCGCCATCGAATATTTCATC
GAGCATACCGAAGCGTTTTTAAGCGAATCCAAGGCACTATACCCTCTTGC
CGGGCTAATTATGGGACATTTGACTTCAGAAGCAAACATTTCCGCCACTA
GCATATTCGATTGCTCTACACCTTTGACGGGAACCATGAATGTGTAA
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