Ggra2882.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2882.t1
Unique NameGgra2882.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:46421..47314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2882Ggra2882Gracilaria gracilis GNS1m malegenetig00000858_pilon 46421..47314 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2882.t1.start1Ggra2882.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 46421..46423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2882.t1.CDS1Ggra2882.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 46421..47314 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2882.t1.exon1Ggra2882.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 46421..47314 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2882.t1.stop1Ggra2882.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 47312..47314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2882.t1Ggra2882.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 46421..47314 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2882.t1 ID=Ggra2882.t1|Name=Ggra2882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=298bp
MDTDFSIDCSTICNEPANTTATEVPFERGKGMLWDLGNDYFDGDLDYFAI
SDAEDDIGEYKDLISSEPEVEESVWPRLEDTDLDVPITITPNFLQSIPCI
SPLQETPVIEQTNGTQNRIDRVNSTRSDESVTIGSDEDVALEHKIKDIQK
RFSAQNACKDTPKSTSFRKEVQKPPTTAGITLDDLKAVFHLERPKAEKRL
RLKRTTFSNLSRYYGISKWPFRTIRDAMNRMSANEKMLRSKVLSKEKNRK
LKEQQRLLSGVIDLIYSNPKESKDTNTLAVLLRIVAARENPGEFPDM*
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spliced messenger RNA

>Ggra2882.t1 ID=Ggra2882.t1|Name=Ggra2882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000858_pilon:46421..47314+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACGGACTTCTCTATCGACTGCAGTACAATTTGCAATGAACCTGC
AAATACAACAGCAACAGAAGTTCCCTTCGAAAGAGGGAAGGGAATGCTCT
GGGACCTGGGTAATGACTACTTCGATGGCGATTTGGATTATTTCGCGATT
TCGGACGCCGAAGACGACATAGGGGAGTACAAGGACTTAATTTCGAGTGA
GCCTGAAGTCGAGGAATCGGTATGGCCGAGACTTGAAGACACAGATCTTG
ATGTTCCAATAACAATAACCCCCAACTTTTTACAGAGCATCCCGTGTATA
TCGCCACTTCAAGAAACTCCTGTCATCGAACAAACTAATGGTACCCAGAA
TAGAATTGATCGAGTAAATTCTACCCGTAGTGATGAAAGTGTCACTATTG
GAAGTGACGAAGACGTCGCCCTGGAACATAAGATAAAGGATATTCAGAAG
AGATTCAGCGCTCAAAATGCTTGCAAAGACACACCGAAAAGCACATCATT
CAGGAAGGAGGTTCAGAAACCGCCAACTACGGCAGGGATCACTCTTGATG
ACCTCAAAGCTGTTTTCCATTTGGAACGTCCGAAAGCAGAGAAACGGTTG
CGTCTAAAGCGAACGACATTCTCAAACCTTAGCAGATATTATGGGATTTC
GAAGTGGCCCTTTCGCACTATCAGAGATGCAATGAATCGCATGAGTGCTA
ATGAGAAGATGCTACGCAGCAAAGTACTCTCAAAAGAGAAAAATCGTAAG
CTTAAAGAGCAGCAACGGCTTCTGTCTGGCGTAATCGACCTCATCTATTC
TAATCCGAAGGAAAGTAAGGATACAAACACCTTAGCAGTCCTGCTTCGAA
TCGTAGCCGCTCGAGAAAACCCAGGTGAATTTCCGGATATGTAA
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protein sequence of Ggra2882.t1

>Ggra2882.t1 ID=Ggra2882.t1|Name=Ggra2882.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MDTDFSIDCSTICNEPANTTATEVPFERGKGMLWDLGNDYFDGDLDYFAI
SDAEDDIGEYKDLISSEPEVEESVWPRLEDTDLDVPITITPNFLQSIPCI
SPLQETPVIEQTNGTQNRIDRVNSTRSDESVTIGSDEDVALEHKIKDIQK
RFSAQNACKDTPKSTSFRKEVQKPPTTAGITLDDLKAVFHLERPKAEKRL
RLKRTTFSNLSRYYGISKWPFRTIRDAMNRMSANEKMLRSKVLSKEKNRK
LKEQQRLLSGVIDLIYSNPKESKDTNTLAVLLRIVAARENPGEFPDM*
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mRNA from alignment at tig00000858_pilon:46421..47314+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2882.t1 ID=Ggra2882.t1|Name=Ggra2882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000858_pilon:46421..47314+ (Gracilaria gracilis GNS1m male)
ATGGACACGGACTTCTCTATCGACTGCAGTACAATTTGCAATGAACCTGC
AAATACAACAGCAACAGAAGTTCCCTTCGAAAGAGGGAAGGGAATGCTCT
GGGACCTGGGTAATGACTACTTCGATGGCGATTTGGATTATTTCGCGATT
TCGGACGCCGAAGACGACATAGGGGAGTACAAGGACTTAATTTCGAGTGA
GCCTGAAGTCGAGGAATCGGTATGGCCGAGACTTGAAGACACAGATCTTG
ATGTTCCAATAACAATAACCCCCAACTTTTTACAGAGCATCCCGTGTATA
TCGCCACTTCAAGAAACTCCTGTCATCGAACAAACTAATGGTACCCAGAA
TAGAATTGATCGAGTAAATTCTACCCGTAGTGATGAAAGTGTCACTATTG
GAAGTGACGAAGACGTCGCCCTGGAACATAAGATAAAGGATATTCAGAAG
AGATTCAGCGCTCAAAATGCTTGCAAAGACACACCGAAAAGCACATCATT
CAGGAAGGAGGTTCAGAAACCGCCAACTACGGCAGGGATCACTCTTGATG
ACCTCAAAGCTGTTTTCCATTTGGAACGTCCGAAAGCAGAGAAACGGTTG
CGTCTAAAGCGAACGACATTCTCAAACCTTAGCAGATATTATGGGATTTC
GAAGTGGCCCTTTCGCACTATCAGAGATGCAATGAATCGCATGAGTGCTA
ATGAGAAGATGCTACGCAGCAAAGTACTCTCAAAAGAGAAAAATCGTAAG
CTTAAAGAGCAGCAACGGCTTCTGTCTGGCGTAATCGACCTCATCTATTC
TAATCCGAAGGAAAGTAAGGATACAAACACCTTAGCAGTCCTGCTTCGAA
TCGTAGCCGCTCGAGAAAACCCAGGTGAATTTCCGGATATGTAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:46421..47314+

>Ggra2882.t1 ID=Ggra2882.t1|Name=Ggra2882.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000858_pilon:46421..47314+ (Gracilaria gracilis GNS1m male)
ATGGACACGGACTTCTCTATCGACTGCAGTACAATTTGCAATGAACCTGC
AAATACAACAGCAACAGAAGTTCCCTTCGAAAGAGGGAAGGGAATGCTCT
GGGACCTGGGTAATGACTACTTCGATGGCGATTTGGATTATTTCGCGATT
TCGGACGCCGAAGACGACATAGGGGAGTACAAGGACTTAATTTCGAGTGA
GCCTGAAGTCGAGGAATCGGTATGGCCGAGACTTGAAGACACAGATCTTG
ATGTTCCAATAACAATAACCCCCAACTTTTTACAGAGCATCCCGTGTATA
TCGCCACTTCAAGAAACTCCTGTCATCGAACAAACTAATGGTACCCAGAA
TAGAATTGATCGAGTAAATTCTACCCGTAGTGATGAAAGTGTCACTATTG
GAAGTGACGAAGACGTCGCCCTGGAACATAAGATAAAGGATATTCAGAAG
AGATTCAGCGCTCAAAATGCTTGCAAAGACACACCGAAAAGCACATCATT
CAGGAAGGAGGTTCAGAAACCGCCAACTACGGCAGGGATCACTCTTGATG
ACCTCAAAGCTGTTTTCCATTTGGAACGTCCGAAAGCAGAGAAACGGTTG
CGTCTAAAGCGAACGACATTCTCAAACCTTAGCAGATATTATGGGATTTC
GAAGTGGCCCTTTCGCACTATCAGAGATGCAATGAATCGCATGAGTGCTA
ATGAGAAGATGCTACGCAGCAAAGTACTCTCAAAAGAGAAAAATCGTAAG
CTTAAAGAGCAGCAACGGCTTCTGTCTGGCGTAATCGACCTCATCTATTC
TAATCCGAAGGAAAGTAAGGATACAAACACCTTAGCAGTCCTGCTTCGAA
TCGTAGCCGCTCGAGAAAACCCAGGTGAATTTCCGGATATGTAA
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