Ggra2875.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2875.t1
Unique NameGgra2875.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000401_piloncontigtig00000401_pilon:16408..17752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1230476.C207_00838
Preferred namethiD
PFAMsPhos_pyr_kin
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00002,RC00017
KEGG koko:K00941
KEGG ReactionR03471,R04509
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
Evalue9.3e-54
EggNOG OGsCOG0351@1|root,COG0351@2|Bacteria,1MU9J@1224|Proteobacteria,2TUKR@28211|Alphaproteobacteria,3JRSS@41294|Bradyrhizobiaceae
EC2.7.1.49,2.7.4.7
DescriptionPhosphomethylpyrimidine kinase
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2875Ggra2875Gracilaria gracilis GNS1m malegenetig00000401_pilon 16408..17752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2875.t1Ggra2875.t1Gracilaria gracilis GNS1m malepolypeptidetig00000401_pilon 16408..17752 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2875.t1.start1Ggra2875.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000401_pilon 16408..16410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2875.t1.CDS1Ggra2875.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000401_pilon 16408..16628 +
Ggra2875.t1.CDS2Ggra2875.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000401_pilon 16753..17752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2875.t1.exon1Ggra2875.t1.exon1Gracilaria gracilis GNS1m maleexontig00000401_pilon 16408..16628 +
Ggra2875.t1.exon2Ggra2875.t1.exon2Gracilaria gracilis GNS1m maleexontig00000401_pilon 16753..17752 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2875.t1.intron1Ggra2875.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000401_pilon 16629..16752 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2875.t1.stop1Ggra2875.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000401_pilon 17750..17752 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2875.t1 ID=Ggra2875.t1|Name=Ggra2875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=407bp
MSVAADSGQVGRGVSMLLAYSIGLGVPFMLAAIAVRPFLRFLKKFQRHLG
TIEKIMGLMLIFVGFLFINSTLDWLDVDMTHADAPYVALTIAGSDSSGGA
GIQADLKSFAAFGVHGASVVTAVTAQNTTSVSDIHTLPLSSIEAQLDAVF
SDMPVRAIKIGMIGSATIASLVGRYIKQANVELVVVDTPLMSGTGAALGD
ELVRSAIVEHLFPLAHIITPNLHEAALLLDEAPLSFEDFYSADETKRILF
EKVIAEFEAQAQKLLALGPRSVLLKGGHFYDLASNAESDVPQITERKAID
VFYEGAASEDIALEGVVSEGIVSENTGSKVFVSDWVDVVHHHGTGCALAS
AIAANLIYGKDAGKSDKWAVERARNWLQECLKDSHAMSVGKGAGPLNIAN
LRKIDL*
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spliced messenger RNA

>Ggra2875.t1 ID=Ggra2875.t1|Name=Ggra2875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000401_pilon:16408..17752+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTTGCGGCTGATAGTGGTCAAGTTGGTCGCGGTGTTTCCATGTT
GCTTGCTTACTCCATTGGGCTTGGGGTTCCTTTCATGTTGGCGGCGATAG
CGGTTAGACCGTTTTTGAGATTTTTAAAGAAATTTCAGCGTCACCTTGGA
ACCATTGAAAAGATAATGGGGCTTATGCTTATCTTTGTTGGTTTCCTCTT
TATCAATTCTACTCTTGATTGGCTTGATGTTGATATGACCCATGCTGATG
CTCCTTATGTTGCTTTAACCATTGCTGGTTCTGATAGTTCTGGCGGGGCT
GGTATACAGGCTGATCTGAAAAGCTTTGCAGCTTTTGGGGTTCATGGGGC
ATCAGTTGTTACCGCGGTGACAGCGCAGAACACAACCTCTGTCAGTGATA
TTCATACTTTACCATTGTCTTCGATTGAGGCTCAGCTTGATGCTGTTTTT
AGTGATATGCCTGTGCGGGCAATCAAGATTGGGATGATTGGTTCAGCGAC
GATTGCGTCGTTGGTTGGGCGTTATATAAAACAAGCTAATGTTGAGTTGG
TTGTGGTTGATACGCCTTTGATGTCTGGTACGGGGGCGGCGCTTGGGGAT
GAGTTGGTGCGATCTGCGATCGTTGAACATTTATTTCCTTTAGCTCATAT
CATTACGCCTAATTTGCATGAGGCGGCTTTATTACTGGATGAAGCCCCTC
TTTCTTTTGAAGATTTTTACTCAGCTGATGAAACGAAGCGCATTTTATTT
GAAAAAGTCATTGCTGAATTTGAGGCGCAAGCACAGAAACTGCTCGCTCT
TGGGCCGCGTTCCGTCTTGTTGAAGGGCGGTCATTTTTATGATTTAGCTT
CAAATGCTGAGAGTGATGTGCCTCAAATTACTGAAAGAAAGGCGATTGAT
GTGTTTTATGAAGGCGCAGCTTCAGAAGACATTGCTTTAGAAGGCGTTGT
TTCAGAAGGCATTGTTTCAGAAAATACTGGTTCTAAAGTGTTTGTGTCAG
ATTGGGTTGATGTGGTGCACCATCATGGGACTGGGTGTGCACTTGCTTCG
GCAATTGCTGCTAATCTTATTTATGGTAAAGATGCTGGAAAATCGGATAA
ATGGGCCGTTGAGAGAGCCAGGAATTGGCTGCAAGAGTGTTTGAAAGACT
CTCATGCAATGTCAGTTGGAAAAGGTGCCGGACCGTTAAATATTGCCAAT
TTACGTAAAATTGATCTATAA
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protein sequence of Ggra2875.t1

>Ggra2875.t1 ID=Ggra2875.t1|Name=Ggra2875.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=407bp
MSVAADSGQVGRGVSMLLAYSIGLGVPFMLAAIAVRPFLRFLKKFQRHLG
TIEKIMGLMLIFVGFLFINSTLDWLDVDMTHADAPYVALTIAGSDSSGGA
GIQADLKSFAAFGVHGASVVTAVTAQNTTSVSDIHTLPLSSIEAQLDAVF
SDMPVRAIKIGMIGSATIASLVGRYIKQANVELVVVDTPLMSGTGAALGD
ELVRSAIVEHLFPLAHIITPNLHEAALLLDEAPLSFEDFYSADETKRILF
EKVIAEFEAQAQKLLALGPRSVLLKGGHFYDLASNAESDVPQITERKAID
VFYEGAASEDIALEGVVSEGIVSENTGSKVFVSDWVDVVHHHGTGCALAS
AIAANLIYGKDAGKSDKWAVERARNWLQECLKDSHAMSVGKGAGPLNIAN
LRKIDL*
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mRNA from alignment at tig00000401_pilon:16408..17752+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2875.t1 ID=Ggra2875.t1|Name=Ggra2875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1345bp|location=Sequence derived from alignment at tig00000401_pilon:16408..17752+ (Gracilaria gracilis GNS1m male)
ATGTCTGTTGCGGCTGATAGTGGTCAAGTTGGTCGCGGTGTTTCCATGTT
GCTTGCTTACTCCATTGGGCTTGGGGTTCCTTTCATGTTGGCGGCGATAG
CGGTTAGACCGTTTTTGAGATTTTTAAAGAAATTTCAGCGTCACCTTGGA
ACCATTGAAAAGATAATGGGGCTTATGCTTATCTTTGTTGGTTTCCTCTT
TATCAATTCTACTCTTGATTGGTGGGGAAGCTGGATTTCATTAAATGGCC
TTTCAACCTGGTTACTTGAGAATTTTGAAAGTTTGCAATCTATTGAGAAA
TTATTGGTTCCGGATGATTTGCCTGAGCAAATTATGAAGCAATAGGCTTG
ATGTTGATATGACCCATGCTGATGCTCCTTATGTTGCTTTAACCATTGCT
GGTTCTGATAGTTCTGGCGGGGCTGGTATACAGGCTGATCTGAAAAGCTT
TGCAGCTTTTGGGGTTCATGGGGCATCAGTTGTTACCGCGGTGACAGCGC
AGAACACAACCTCTGTCAGTGATATTCATACTTTACCATTGTCTTCGATT
GAGGCTCAGCTTGATGCTGTTTTTAGTGATATGCCTGTGCGGGCAATCAA
GATTGGGATGATTGGTTCAGCGACGATTGCGTCGTTGGTTGGGCGTTATA
TAAAACAAGCTAATGTTGAGTTGGTTGTGGTTGATACGCCTTTGATGTCT
GGTACGGGGGCGGCGCTTGGGGATGAGTTGGTGCGATCTGCGATCGTTGA
ACATTTATTTCCTTTAGCTCATATCATTACGCCTAATTTGCATGAGGCGG
CTTTATTACTGGATGAAGCCCCTCTTTCTTTTGAAGATTTTTACTCAGCT
GATGAAACGAAGCGCATTTTATTTGAAAAAGTCATTGCTGAATTTGAGGC
GCAAGCACAGAAACTGCTCGCTCTTGGGCCGCGTTCCGTCTTGTTGAAGG
GCGGTCATTTTTATGATTTAGCTTCAAATGCTGAGAGTGATGTGCCTCAA
ATTACTGAAAGAAAGGCGATTGATGTGTTTTATGAAGGCGCAGCTTCAGA
AGACATTGCTTTAGAAGGCGTTGTTTCAGAAGGCATTGTTTCAGAAAATA
CTGGTTCTAAAGTGTTTGTGTCAGATTGGGTTGATGTGGTGCACCATCAT
GGGACTGGGTGTGCACTTGCTTCGGCAATTGCTGCTAATCTTATTTATGG
TAAAGATGCTGGAAAATCGGATAAATGGGCCGTTGAGAGAGCCAGGAATT
GGCTGCAAGAGTGTTTGAAAGACTCTCATGCAATGTCAGTTGGAAAAGGT
GCCGGACCGTTAAATATTGCCAATTTACGTAAAATTGATCTATAA
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Coding sequence (CDS) from alignment at tig00000401_pilon:16408..17752+

>Ggra2875.t1 ID=Ggra2875.t1|Name=Ggra2875.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00000401_pilon:16408..17752+ (Gracilaria gracilis GNS1m male)
ATGTCTGTTGCGGCTGATAGTGGTCAAGTTGGTCGCGGTGTTTCCATGTT
GCTTGCTTACTCCATTGGGCTTGGGGTTCCTTTCATGTTGGCGGCGATAG
CGGTTAGACCGTTTTTGAGATTTTTAAAGAAATTTCAGCGTCACCTTGGA
ACCATTGAAAAGATAATGGGGCTTATGCTTATCTTTGTTGGTTTCCTCTT
TATCAATTCTACTCTTGATTGGCTTGATGTTGATATGACCCATGCTGATG
CTCCTTATGTTGCTTTAACCATTGCTGGTTCTGATAGTTCTGGCGGGGCT
GGTATACAGGCTGATCTGAAAAGCTTTGCAGCTTTTGGGGTTCATGGGGC
ATCAGTTGTTACCGCGGTGACAGCGCAGAACACAACCTCTGTCAGTGATA
TTCATACTTTACCATTGTCTTCGATTGAGGCTCAGCTTGATGCTGTTTTT
AGTGATATGCCTGTGCGGGCAATCAAGATTGGGATGATTGGTTCAGCGAC
GATTGCGTCGTTGGTTGGGCGTTATATAAAACAAGCTAATGTTGAGTTGG
TTGTGGTTGATACGCCTTTGATGTCTGGTACGGGGGCGGCGCTTGGGGAT
GAGTTGGTGCGATCTGCGATCGTTGAACATTTATTTCCTTTAGCTCATAT
CATTACGCCTAATTTGCATGAGGCGGCTTTATTACTGGATGAAGCCCCTC
TTTCTTTTGAAGATTTTTACTCAGCTGATGAAACGAAGCGCATTTTATTT
GAAAAAGTCATTGCTGAATTTGAGGCGCAAGCACAGAAACTGCTCGCTCT
TGGGCCGCGTTCCGTCTTGTTGAAGGGCGGTCATTTTTATGATTTAGCTT
CAAATGCTGAGAGTGATGTGCCTCAAATTACTGAAAGAAAGGCGATTGAT
GTGTTTTATGAAGGCGCAGCTTCAGAAGACATTGCTTTAGAAGGCGTTGT
TTCAGAAGGCATTGTTTCAGAAAATACTGGTTCTAAAGTGTTTGTGTCAG
ATTGGGTTGATGTGGTGCACCATCATGGGACTGGGTGTGCACTTGCTTCG
GCAATTGCTGCTAATCTTATTTATGGTAAAGATGCTGGAAAATCGGATAA
ATGGGCCGTTGAGAGAGCCAGGAATTGGCTGCAAGAGTGTTTGAAAGACT
CTCATGCAATGTCAGTTGGAAAAGGTGCCGGACCGTTAAATATTGCCAAT
TTACGTAAAATTGATCTATAA
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