Ggra2873.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2873.t1
Unique Name	Ggra2873.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	464

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000401_pilon	contig	tig00000401_pilon:8486..9877 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1449065.JMLL01000015_gene4243
Preferred name	cbbL
PFAMs	RuBisCO_large,RuBisCO_large_N
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00172,RC00859
KEGG ko	ko:K01601
KEGG Reaction	R00024,R03140
KEGG Pathway	ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200
KEGG Module	M00165,M00166,M00532
Evalue	6.48e-301
EggNOG OGs	COG1850@1\|root,COG1850@2\|Bacteria,1MWEB@1224\|Proteobacteria,2TSJV@28211\|Alphaproteobacteria,43HIF@69277\|Phyllobacteriaceae
EC	4.1.1.39
Description	Belongs to the RuBisCO large chain family
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2873	Ggra2873	Gracilaria gracilis GNS1m male	gene	tig00000401_pilon 8486..9877 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2873.t1.start1	Ggra2873.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000401_pilon 8486..8488 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2873.t1.CDS1	Ggra2873.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000401_pilon 8486..9877 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2873.t1.exon1	Ggra2873.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000401_pilon 8486..9877 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2873.t1.stop1	Ggra2873.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000401_pilon 9875..9877 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2873.t1	Ggra2873.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000401_pilon 8486..9877 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000401_pilon:8486..9877+
coding sequence from alignment at tig00000401_pilon:8486..9877+

mRNA sequence

>Ggra2873.t1 ID=Ggra2873.t1|Name=Ggra2873.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=464bp
MGYWEPDYEPKDTDIIAMFRISPQDGVDPIEAAAAVAGESSTATWTVVWT
DRLTASEKYRAKAYRVDPVPNSDDQYFAYIAYDLDLFEPGSIANLTASII
GNVFGFKPLKALRLEDMRFPVAYIKTFQGPSTGIVVERERLDKFGRPLLG
ATVKPKLGLSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRDRFLYC
MEAVNKAEAATGEIKGTYLNVTAGTMEEMYKRAEFAKELGSCIIMIDLVI
GYTAIQSMSNWCRQNDMILHLHRAGHGTYTRQKTHGISFRVIAKWMRLAG
VDHLHGGTVVGKLEGDPAMTRGWYDYMREEYCPMNLENGVFFDQDWASMN
KVLPVASGGIHAGQMHQLIQHLGEDVVLQFGGGTIGHPDGIAAGAVANRV
ALEVMVQARNEGRDYVNEGPEILNAAAKWCSPLKSALNTWKDVTFDYAST
DTSDFAPTATPSN*

spliced messenger RNA

>Ggra2873.t1 ID=Ggra2873.t1|Name=Ggra2873.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000401_pilon:8486..9877+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTATTGGGAACCTGACTATGAACCCAAAGATACCGACATTATTGC
GATGTTTCGCATTAGCCCGCAAGATGGTGTGGATCCTATTGAAGCTGCAG
CAGCCGTTGCTGGCGAAAGTTCAACGGCGACATGGACAGTTGTTTGGACG
GACCGCTTAACGGCCTCAGAAAAATACCGCGCGAAAGCATATCGTGTTGA
CCCTGTTCCAAATTCAGATGATCAATATTTTGCATATATTGCTTATGATC
TCGATTTGTTTGAGCCAGGTTCAATTGCAAACTTGACCGCATCAATCATT
GGTAACGTATTTGGCTTTAAGCCACTGAAAGCGCTGCGCCTCGAAGACAT
GCGGTTTCCAGTGGCTTATATCAAAACATTCCAAGGACCATCGACTGGCA
TCGTGGTTGAACGGGAACGTCTTGATAAGTTTGGTCGACCTTTATTGGGT
GCGACAGTAAAACCAAAGCTTGGTCTATCTGGCCGTAACTATGGTCGTGT
TGTTTACGAAGCACTTAAAGGTGGTTTGGACTTTACCAAAGATGACGAAA
ATATCAACTCTCAACCATTTATGCACTGGCGTGACCGTTTTCTATACTGC
ATGGAAGCTGTGAATAAGGCTGAAGCTGCAACTGGTGAGATTAAAGGTAC
TTATCTTAATGTAACCGCTGGTACTATGGAAGAAATGTATAAGCGGGCCG
AATTTGCCAAAGAATTAGGCTCCTGCATTATCATGATCGACCTTGTTATT
GGTTACACTGCCATTCAGTCTATGTCGAATTGGTGCCGTCAAAATGATAT
GATCCTTCACTTGCACCGCGCTGGTCACGGTACTTATACTCGCCAGAAAA
CACATGGTATTTCTTTCCGTGTGATTGCGAAATGGATGCGCCTTGCTGGT
GTTGACCATCTTCATGGTGGTACTGTTGTTGGTAAACTTGAAGGTGACCC
TGCAATGACACGCGGTTGGTATGACTATATGCGTGAAGAATATTGCCCAA
TGAATTTAGAAAATGGCGTGTTCTTCGATCAAGACTGGGCATCTATGAAT
AAAGTTCTGCCTGTTGCTTCTGGTGGTATTCACGCTGGTCAAATGCATCA
GTTGATCCAGCACCTTGGTGAAGACGTTGTTCTTCAGTTTGGTGGCGGTA
CAATTGGTCACCCTGATGGCATTGCTGCTGGTGCGGTTGCTAACCGTGTT
GCTCTTGAAGTTATGGTTCAAGCGCGGAACGAAGGACGTGACTACGTTAA
TGAAGGTCCTGAAATTCTTAATGCTGCAGCGAAATGGTGTTCACCACTGA
AATCAGCATTGAATACATGGAAAGACGTGACATTTGATTATGCATCAACT
GACACATCTGACTTTGCACCAACTGCAACACCAAGTAACTAA

protein sequence of Ggra2873.t1

>Ggra2873.t1 ID=Ggra2873.t1|Name=Ggra2873.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=464bp
MGYWEPDYEPKDTDIIAMFRISPQDGVDPIEAAAAVAGESSTATWTVVWT
DRLTASEKYRAKAYRVDPVPNSDDQYFAYIAYDLDLFEPGSIANLTASII
GNVFGFKPLKALRLEDMRFPVAYIKTFQGPSTGIVVERERLDKFGRPLLG
ATVKPKLGLSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRDRFLYC
MEAVNKAEAATGEIKGTYLNVTAGTMEEMYKRAEFAKELGSCIIMIDLVI
GYTAIQSMSNWCRQNDMILHLHRAGHGTYTRQKTHGISFRVIAKWMRLAG
VDHLHGGTVVGKLEGDPAMTRGWYDYMREEYCPMNLENGVFFDQDWASMN
KVLPVASGGIHAGQMHQLIQHLGEDVVLQFGGGTIGHPDGIAAGAVANRV
ALEVMVQARNEGRDYVNEGPEILNAAAKWCSPLKSALNTWKDVTFDYAST
DTSDFAPTATPSN*

mRNA from alignment at tig00000401_pilon:8486..9877+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2873.t1 ID=Ggra2873.t1|Name=Ggra2873.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000401_pilon:8486..9877+ (Gracilaria gracilis GNS1m male)
ATGGGCTATTGGGAACCTGACTATGAACCCAAAGATACCGACATTATTGC
GATGTTTCGCATTAGCCCGCAAGATGGTGTGGATCCTATTGAAGCTGCAG
CAGCCGTTGCTGGCGAAAGTTCAACGGCGACATGGACAGTTGTTTGGACG
GACCGCTTAACGGCCTCAGAAAAATACCGCGCGAAAGCATATCGTGTTGA
CCCTGTTCCAAATTCAGATGATCAATATTTTGCATATATTGCTTATGATC
TCGATTTGTTTGAGCCAGGTTCAATTGCAAACTTGACCGCATCAATCATT
GGTAACGTATTTGGCTTTAAGCCACTGAAAGCGCTGCGCCTCGAAGACAT
GCGGTTTCCAGTGGCTTATATCAAAACATTCCAAGGACCATCGACTGGCA
TCGTGGTTGAACGGGAACGTCTTGATAAGTTTGGTCGACCTTTATTGGGT
GCGACAGTAAAACCAAAGCTTGGTCTATCTGGCCGTAACTATGGTCGTGT
TGTTTACGAAGCACTTAAAGGTGGTTTGGACTTTACCAAAGATGACGAAA
ATATCAACTCTCAACCATTTATGCACTGGCGTGACCGTTTTCTATACTGC
ATGGAAGCTGTGAATAAGGCTGAAGCTGCAACTGGTGAGATTAAAGGTAC
TTATCTTAATGTAACCGCTGGTACTATGGAAGAAATGTATAAGCGGGCCG
AATTTGCCAAAGAATTAGGCTCCTGCATTATCATGATCGACCTTGTTATT
GGTTACACTGCCATTCAGTCTATGTCGAATTGGTGCCGTCAAAATGATAT
GATCCTTCACTTGCACCGCGCTGGTCACGGTACTTATACTCGCCAGAAAA
CACATGGTATTTCTTTCCGTGTGATTGCGAAATGGATGCGCCTTGCTGGT
GTTGACCATCTTCATGGTGGTACTGTTGTTGGTAAACTTGAAGGTGACCC
TGCAATGACACGCGGTTGGTATGACTATATGCGTGAAGAATATTGCCCAA
TGAATTTAGAAAATGGCGTGTTCTTCGATCAAGACTGGGCATCTATGAAT
AAAGTTCTGCCTGTTGCTTCTGGTGGTATTCACGCTGGTCAAATGCATCA
GTTGATCCAGCACCTTGGTGAAGACGTTGTTCTTCAGTTTGGTGGCGGTA
CAATTGGTCACCCTGATGGCATTGCTGCTGGTGCGGTTGCTAACCGTGTT
GCTCTTGAAGTTATGGTTCAAGCGCGGAACGAAGGACGTGACTACGTTAA
TGAAGGTCCTGAAATTCTTAATGCTGCAGCGAAATGGTGTTCACCACTGA
AATCAGCATTGAATACATGGAAAGACGTGACATTTGATTATGCATCAACT
GACACATCTGACTTTGCACCAACTGCAACACCAAGTAACTAA

Coding sequence (CDS) from alignment at tig00000401_pilon:8486..9877+

>Ggra2873.t1 ID=Ggra2873.t1|Name=Ggra2873.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00000401_pilon:8486..9877+ (Gracilaria gracilis GNS1m male)
ATGGGCTATTGGGAACCTGACTATGAACCCAAAGATACCGACATTATTGC
GATGTTTCGCATTAGCCCGCAAGATGGTGTGGATCCTATTGAAGCTGCAG
CAGCCGTTGCTGGCGAAAGTTCAACGGCGACATGGACAGTTGTTTGGACG
GACCGCTTAACGGCCTCAGAAAAATACCGCGCGAAAGCATATCGTGTTGA
CCCTGTTCCAAATTCAGATGATCAATATTTTGCATATATTGCTTATGATC
TCGATTTGTTTGAGCCAGGTTCAATTGCAAACTTGACCGCATCAATCATT
GGTAACGTATTTGGCTTTAAGCCACTGAAAGCGCTGCGCCTCGAAGACAT
GCGGTTTCCAGTGGCTTATATCAAAACATTCCAAGGACCATCGACTGGCA
TCGTGGTTGAACGGGAACGTCTTGATAAGTTTGGTCGACCTTTATTGGGT
GCGACAGTAAAACCAAAGCTTGGTCTATCTGGCCGTAACTATGGTCGTGT
TGTTTACGAAGCACTTAAAGGTGGTTTGGACTTTACCAAAGATGACGAAA
ATATCAACTCTCAACCATTTATGCACTGGCGTGACCGTTTTCTATACTGC
ATGGAAGCTGTGAATAAGGCTGAAGCTGCAACTGGTGAGATTAAAGGTAC
TTATCTTAATGTAACCGCTGGTACTATGGAAGAAATGTATAAGCGGGCCG
AATTTGCCAAAGAATTAGGCTCCTGCATTATCATGATCGACCTTGTTATT
GGTTACACTGCCATTCAGTCTATGTCGAATTGGTGCCGTCAAAATGATAT
GATCCTTCACTTGCACCGCGCTGGTCACGGTACTTATACTCGCCAGAAAA
CACATGGTATTTCTTTCCGTGTGATTGCGAAATGGATGCGCCTTGCTGGT
GTTGACCATCTTCATGGTGGTACTGTTGTTGGTAAACTTGAAGGTGACCC
TGCAATGACACGCGGTTGGTATGACTATATGCGTGAAGAATATTGCCCAA
TGAATTTAGAAAATGGCGTGTTCTTCGATCAAGACTGGGCATCTATGAAT
AAAGTTCTGCCTGTTGCTTCTGGTGGTATTCACGCTGGTCAAATGCATCA
GTTGATCCAGCACCTTGGTGAAGACGTTGTTCTTCAGTTTGGTGGCGGTA
CAATTGGTCACCCTGATGGCATTGCTGCTGGTGCGGTTGCTAACCGTGTT
GCTCTTGAAGTTATGGTTCAAGCGCGGAACGAAGGACGTGACTACGTTAA
TGAAGGTCCTGAAATTCTTAATGCTGCAGCGAAATGGTGTTCACCACTGA
AATCAGCATTGAATACATGGAAAGACGTGACATTTGATTATGCATCAACT
GACACATCTGACTTTGCACCAACTGCAACACCAAGTAACTAA