Ggra2867.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2867.t1
Unique Name	Ggra2867.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	751

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000077_pilon	contig	tig00000077_pilon:251739..254238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_002734747.1
PFAMs	GRDP-like
Max annot lvl	33208\|Metazoa
Evalue	6.28e-47
EggNOG OGs	28JC1@1\|root,2QRQZ@2759\|Eukaryota,38E6R@33154\|Opisthokonta,3BHPZ@33208\|Metazoa,3D58M@33213\|Bilateria
Description	Glycine-rich domain-containing protein-like
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2867	Ggra2867	Gracilaria gracilis GNS1m male	gene	tig00000077_pilon 251739..254238 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2867.t1	Ggra2867.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000077_pilon 251739..254238 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2867.t1.start1	Ggra2867.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000077_pilon 251739..251741 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2867.t1.CDS1	Ggra2867.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000077_pilon 251739..253878 +
Ggra2867.t1.CDS2	Ggra2867.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000077_pilon 254126..254238 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2867.t1.exon1	Ggra2867.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000077_pilon 251739..253878 +
Ggra2867.t1.exon2	Ggra2867.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000077_pilon 254126..254238 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2867.t1.intron1	Ggra2867.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000077_pilon 253879..254125 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2867.t1.stop1	Ggra2867.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000077_pilon 254236..254238 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000077_pilon:251739..254238+
coding sequence from alignment at tig00000077_pilon:251739..254238+

mRNA sequence

>Ggra2867.t1 ID=Ggra2867.t1|Name=Ggra2867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=751bp
MKFLGYELGGSNSQARRGLLPSVKALVSVLNEVDQYPALYFNHLVLREAI
RRYEHLWIPLLMNAKPKQRWRLVPPLDVEWVWFCHMLCPVKYATDCAAMS
QAVRPNEPEVIVDHVLLGPKKRQAGKLEAEQLWRQMYPHEPFDNTDTIKD
APIQVPRTPAGDIMKGGSASEASRISYDIVAAAERQMVFQYQVGIMPQYQ
ENWFLRSAVRRYRKFLKLQQLHPDKIWVPTYDIDVCWHAHMMHPRWYNSK
TVKLKGSVLNHDDTLNDRATGSKLNRRWDETASTWLQLFSSPVHRAGGMW
RGNVEASERVVRPALVNMIATLQADCSSSANAVYIMWDVDLSALDLIDGS
DWVHRTDWRRRNEPAGSSSQDSTGRTVERFTCLAHGAGDAAMLLSRTTHF
LMYKNDSSNAEPIRFSTVIELFGSKTSADTPRYPLATAHHVLPNSMCGSK
SFKFSPDKCAASSEETVFVLRVGGEDFGLIAGEWIDFESPRKGIPGIPGD
KKAGRRGVLGIPGRRGDPGYLSLRIWLFGTDMPKRWLNLKPSRTTKNPMT
YSFVLPPLSVAGGISAGEVAFSLRTSKLQVHDRSQLLAAYLISTAAAALF
ATLQPRFVPRGGAKVGSHETMYPAWSVQQKDYAMIRGAGGEVPTEQGTQG
LGTMLLPLKRSAWDCQNFPGSPRRVLKFTRAPRDARDRVRRTEHNPMFGG
IVDEIGDPQGTSAGTVGTNGGYKRYLEVQRTLVPEIETSEELDRLRQPER
*

spliced messenger RNA

>Ggra2867.t1 ID=Ggra2867.t1|Name=Ggra2867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2253bp|location=Sequence derived from alignment at tig00000077_pilon:251739..254238+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATTCTTGGGCTATGAACTAGGGGGAAGCAACTCCCAGGCAAGGCG
GGGTCTGCTGCCATCTGTGAAGGCGCTAGTGTCTGTTCTTAACGAAGTCG
ACCAGTACCCAGCTCTCTATTTCAACCACCTCGTGTTACGGGAGGCCATT
CGCCGCTATGAACATTTATGGATTCCCCTTCTTATGAATGCCAAACCCAA
GCAACGCTGGCGTCTCGTTCCGCCACTTGACGTTGAATGGGTTTGGTTCT
GTCATATGCTATGTCCTGTCAAATACGCCACTGACTGCGCTGCCATGTCG
CAGGCCGTGCGCCCTAACGAGCCTGAAGTCATTGTCGACCATGTGCTTCT
GGGGCCAAAGAAAAGACAGGCAGGAAAGTTGGAGGCTGAACAACTGTGGC
GACAGATGTATCCCCACGAGCCGTTCGACAACACGGATACTATCAAAGAT
GCACCCATCCAAGTGCCCCGCACGCCCGCAGGAGACATAATGAAGGGTGG
CTCCGCATCGGAAGCCTCGCGAATCTCGTACGATATCGTGGCCGCAGCAG
AAAGGCAGATGGTATTCCAGTACCAGGTAGGCATCATGCCACAATATCAA
GAGAACTGGTTTCTGCGGTCCGCCGTACGCCGATACAGAAAGTTTCTCAA
ACTGCAACAGTTGCATCCGGACAAGATATGGGTACCAACTTATGATATCG
ATGTGTGCTGGCACGCTCATATGATGCACCCACGTTGGTACAACAGCAAG
ACGGTGAAGTTGAAGGGATCGGTACTGAACCATGATGATACGCTCAACGA
TAGAGCAACTGGATCCAAGCTCAACCGAAGGTGGGATGAGACCGCCAGCA
CATGGCTACAGCTTTTCTCTTCTCCAGTACACCGTGCTGGTGGAATGTGG
AGGGGGAATGTCGAAGCCTCAGAAAGAGTAGTAAGACCGGCTCTCGTCAA
TATGATCGCTACTCTGCAGGCGGATTGTTCTTCATCTGCAAACGCTGTAT
ACATAATGTGGGATGTCGACTTGAGTGCATTAGATCTCATCGACGGCTCG
GACTGGGTTCACAGGACTGACTGGCGGAGGAGGAATGAGCCTGCAGGTAG
CAGCAGCCAAGACAGCACTGGAAGAACGGTGGAACGCTTTACCTGCCTCG
CACATGGAGCTGGAGATGCAGCTATGCTATTGAGTCGAACTACACATTTT
CTGATGTACAAGAACGATAGCTCCAATGCTGAACCAATCCGTTTCTCGAC
AGTAATTGAGTTGTTCGGATCGAAGACGTCTGCAGACACACCAAGATACC
CGCTCGCTACAGCGCATCATGTGCTTCCAAACAGTATGTGCGGTTCCAAA
TCGTTCAAATTCTCACCTGACAAATGTGCTGCATCGTCGGAGGAAACTGT
GTTCGTCTTGCGAGTTGGCGGAGAGGACTTTGGTCTCATCGCAGGAGAAT
GGATTGATTTTGAATCTCCTCGGAAAGGAATTCCTGGCATTCCTGGTGAC
AAGAAGGCCGGAAGGCGGGGCGTGCTTGGCATCCCAGGAAGGCGGGGAGA
TCCGGGGTACTTAAGTCTGCGCATATGGTTGTTTGGTACGGACATGCCAA
AGAGGTGGCTCAACTTGAAGCCTTCACGCACGACGAAGAATCCTATGACA
TATTCGTTTGTACTACCGCCTCTCTCTGTGGCAGGAGGCATCTCTGCAGG
TGAAGTGGCATTCAGTCTCCGAACTTCGAAACTGCAGGTACATGATAGAA
GCCAACTGTTGGCAGCGTATCTGATAAGCACAGCAGCAGCAGCGCTGTTC
GCAACACTACAGCCAAGGTTTGTGCCTCGTGGCGGCGCGAAAGTTGGGAG
CCATGAAACGATGTATCCTGCTTGGTCAGTGCAACAGAAAGACTATGCGA
TGATTCGGGGAGCTGGTGGAGAAGTCCCCACCGAGCAGGGTACCCAAGGT
CTGGGAACGATGCTTCTCCCACTGAAAAGAAGCGCGTGGGACTGCCAAAA
CTTCCCAGGATCTCCAAGGCGGGTGCTTAAGTTCACCAGGGCTCCGAGGG
ATGCCAGGGACCGTGTCAGACGAACTGAGCACAATCCAATGTTCGGCGGG
ATTGTGGATGAGATTGGCGATCCTCAAGGAACGAGTGCtgGTACCGTTGG
TACCAATGGCGGATACAAACGGTACCTTGAAGTTCAACGGACGTTGGTAC
CTGAGATTGAGACGAGCGAAGAGTTGGATCGTCTTCGTCAACCAGAGCGA
TGA

protein sequence of Ggra2867.t1

>Ggra2867.t1 ID=Ggra2867.t1|Name=Ggra2867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=751bp
MKFLGYELGGSNSQARRGLLPSVKALVSVLNEVDQYPALYFNHLVLREAI
RRYEHLWIPLLMNAKPKQRWRLVPPLDVEWVWFCHMLCPVKYATDCAAMS
QAVRPNEPEVIVDHVLLGPKKRQAGKLEAEQLWRQMYPHEPFDNTDTIKD
APIQVPRTPAGDIMKGGSASEASRISYDIVAAAERQMVFQYQVGIMPQYQ
ENWFLRSAVRRYRKFLKLQQLHPDKIWVPTYDIDVCWHAHMMHPRWYNSK
TVKLKGSVLNHDDTLNDRATGSKLNRRWDETASTWLQLFSSPVHRAGGMW
RGNVEASERVVRPALVNMIATLQADCSSSANAVYIMWDVDLSALDLIDGS
DWVHRTDWRRRNEPAGSSSQDSTGRTVERFTCLAHGAGDAAMLLSRTTHF
LMYKNDSSNAEPIRFSTVIELFGSKTSADTPRYPLATAHHVLPNSMCGSK
SFKFSPDKCAASSEETVFVLRVGGEDFGLIAGEWIDFESPRKGIPGIPGD
KKAGRRGVLGIPGRRGDPGYLSLRIWLFGTDMPKRWLNLKPSRTTKNPMT
YSFVLPPLSVAGGISAGEVAFSLRTSKLQVHDRSQLLAAYLISTAAAALF
ATLQPRFVPRGGAKVGSHETMYPAWSVQQKDYAMIRGAGGEVPTEQGTQG
LGTMLLPLKRSAWDCQNFPGSPRRVLKFTRAPRDARDRVRRTEHNPMFGG
IVDEIGDPQGTSAGTVGTNGGYKRYLEVQRTLVPEIETSEELDRLRQPER
*

mRNA from alignment at tig00000077_pilon:251739..254238+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2867.t1 ID=Ggra2867.t1|Name=Ggra2867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2500bp|location=Sequence derived from alignment at tig00000077_pilon:251739..254238+ (Gracilaria gracilis GNS1m male)
ATGAAATTCTTGGGCTATGAACTAGGGGGAAGCAACTCCCAGGCAAGGCG
GGGTCTGCTGCCATCTGTGAAGGCGCTAGTGTCTGTTCTTAACGAAGTCG
ACCAGTACCCAGCTCTCTATTTCAACCACCTCGTGTTACGGGAGGCCATT
CGCCGCTATGAACATTTATGGATTCCCCTTCTTATGAATGCCAAACCCAA
GCAACGCTGGCGTCTCGTTCCGCCACTTGACGTTGAATGGGTTTGGTTCT
GTCATATGCTATGTCCTGTCAAATACGCCACTGACTGCGCTGCCATGTCG
CAGGCCGTGCGCCCTAACGAGCCTGAAGTCATTGTCGACCATGTGCTTCT
GGGGCCAAAGAAAAGACAGGCAGGAAAGTTGGAGGCTGAACAACTGTGGC
GACAGATGTATCCCCACGAGCCGTTCGACAACACGGATACTATCAAAGAT
GCACCCATCCAAGTGCCCCGCACGCCCGCAGGAGACATAATGAAGGGTGG
CTCCGCATCGGAAGCCTCGCGAATCTCGTACGATATCGTGGCCGCAGCAG
AAAGGCAGATGGTATTCCAGTACCAGGTAGGCATCATGCCACAATATCAA
GAGAACTGGTTTCTGCGGTCCGCCGTACGCCGATACAGAAAGTTTCTCAA
ACTGCAACAGTTGCATCCGGACAAGATATGGGTACCAACTTATGATATCG
ATGTGTGCTGGCACGCTCATATGATGCACCCACGTTGGTACAACAGCAAG
ACGGTGAAGTTGAAGGGATCGGTACTGAACCATGATGATACGCTCAACGA
TAGAGCAACTGGATCCAAGCTCAACCGAAGGTGGGATGAGACCGCCAGCA
CATGGCTACAGCTTTTCTCTTCTCCAGTACACCGTGCTGGTGGAATGTGG
AGGGGGAATGTCGAAGCCTCAGAAAGAGTAGTAAGACCGGCTCTCGTCAA
TATGATCGCTACTCTGCAGGCGGATTGTTCTTCATCTGCAAACGCTGTAT
ACATAATGTGGGATGTCGACTTGAGTGCATTAGATCTCATCGACGGCTCG
GACTGGGTTCACAGGACTGACTGGCGGAGGAGGAATGAGCCTGCAGGTAG
CAGCAGCCAAGACAGCACTGGAAGAACGGTGGAACGCTTTACCTGCCTCG
CACATGGAGCTGGAGATGCAGCTATGCTATTGAGTCGAACTACACATTTT
CTGATGTACAAGAACGATAGCTCCAATGCTGAACCAATCCGTTTCTCGAC
AGTAATTGAGTTGTTCGGATCGAAGACGTCTGCAGACACACCAAGATACC
CGCTCGCTACAGCGCATCATGTGCTTCCAAACAGTATGTGCGGTTCCAAA
TCGTTCAAATTCTCACCTGACAAATGTGCTGCATCGTCGGAGGAAACTGT
GTTCGTCTTGCGAGTTGGCGGAGAGGACTTTGGTCTCATCGCAGGAGAAT
GGATTGATTTTGAATCTCCTCGGAAAGGAATTCCTGGCATTCCTGGTGAC
AAGAAGGCCGGAAGGCGGGGCGTGCTTGGCATCCCAGGAAGGCGGGGAGA
TCCGGGGTACTTAAGTCTGCGCATATGGTTGTTTGGTACGGACATGCCAA
AGAGGTGGCTCAACTTGAAGCCTTCACGCACGACGAAGAATCCTATGACA
TATTCGTTTGTACTACCGCCTCTCTCTGTGGCAGGAGGCATCTCTGCAGG
TGAAGTGGCATTCAGTCTCCGAACTTCGAAACTGCAGGTACATGATAGAA
GCCAACTGTTGGCAGCGTATCTGATAAGCACAGCAGCAGCAGCGCTGTTC
GCAACACTACAGCCAAGGTTTGTGCCTCGTGGCGGCGCGAAAGTTGGGAG
CCATGAAACGATGTATCCTGCTTGGTCAGTGCAACAGAAAGACTATGCGA
TGATTCGGGGAGCTGGTGGAGAAGTCCCCACCGAGCAGGGTACCCAAGGT
CTGGGAACGATGCTTCTCCCACTGAAAAGAAGCGCGTGGGACTGCCAAAA
CTTCCCAGGATCTCCAAGGCGGGTGCTTAAGTTCACCAGGGCTCCGAGGG
ATGCCAGGGACCGTGTCAGACGAACTGAGCACAATCCAATGTTCGGCGGG
ATTGTGGATGAGATTGGCGATCCTCAAGGAACGAGTGCtggtgacggcga
tggcggcgatggctgtggaggttgtggtggctgtggtggctgcggtggct
gcggtggctgcggtggttgcggcggcggcggcggcggtggctgcggtggc
ggtggctgcggtggcggtggcggctgcggtggcggtggcggctgcggcgg
tggcggaggttgatgAGCTGCAACCGTGTGATGGAGATCTAGTAGATACA
GCGGTAACTTACTGAAGCTTGGAGCCTTGAATCTCAGGTACCGTTGGTAC
CAATGGCGGATACAAACGGTACCTTGAAGTTCAACGGACGTTGGTACCTG
AGATTGAGACGAGCGAAGAGTTGGATCGTCTTCGTCAACCAGAGCGATGA

Coding sequence (CDS) from alignment at tig00000077_pilon:251739..254238+

>Ggra2867.t1 ID=Ggra2867.t1|Name=Ggra2867.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2253bp|location=Sequence derived from alignment at tig00000077_pilon:251739..254238+ (Gracilaria gracilis GNS1m male)
ATGAAATTCTTGGGCTATGAACTAGGGGGAAGCAACTCCCAGGCAAGGCG
GGGTCTGCTGCCATCTGTGAAGGCGCTAGTGTCTGTTCTTAACGAAGTCG
ACCAGTACCCAGCTCTCTATTTCAACCACCTCGTGTTACGGGAGGCCATT
CGCCGCTATGAACATTTATGGATTCCCCTTCTTATGAATGCCAAACCCAA
GCAACGCTGGCGTCTCGTTCCGCCACTTGACGTTGAATGGGTTTGGTTCT
GTCATATGCTATGTCCTGTCAAATACGCCACTGACTGCGCTGCCATGTCG
CAGGCCGTGCGCCCTAACGAGCCTGAAGTCATTGTCGACCATGTGCTTCT
GGGGCCAAAGAAAAGACAGGCAGGAAAGTTGGAGGCTGAACAACTGTGGC
GACAGATGTATCCCCACGAGCCGTTCGACAACACGGATACTATCAAAGAT
GCACCCATCCAAGTGCCCCGCACGCCCGCAGGAGACATAATGAAGGGTGG
CTCCGCATCGGAAGCCTCGCGAATCTCGTACGATATCGTGGCCGCAGCAG
AAAGGCAGATGGTATTCCAGTACCAGGTAGGCATCATGCCACAATATCAA
GAGAACTGGTTTCTGCGGTCCGCCGTACGCCGATACAGAAAGTTTCTCAA
ACTGCAACAGTTGCATCCGGACAAGATATGGGTACCAACTTATGATATCG
ATGTGTGCTGGCACGCTCATATGATGCACCCACGTTGGTACAACAGCAAG
ACGGTGAAGTTGAAGGGATCGGTACTGAACCATGATGATACGCTCAACGA
TAGAGCAACTGGATCCAAGCTCAACCGAAGGTGGGATGAGACCGCCAGCA
CATGGCTACAGCTTTTCTCTTCTCCAGTACACCGTGCTGGTGGAATGTGG
AGGGGGAATGTCGAAGCCTCAGAAAGAGTAGTAAGACCGGCTCTCGTCAA
TATGATCGCTACTCTGCAGGCGGATTGTTCTTCATCTGCAAACGCTGTAT
ACATAATGTGGGATGTCGACTTGAGTGCATTAGATCTCATCGACGGCTCG
GACTGGGTTCACAGGACTGACTGGCGGAGGAGGAATGAGCCTGCAGGTAG
CAGCAGCCAAGACAGCACTGGAAGAACGGTGGAACGCTTTACCTGCCTCG
CACATGGAGCTGGAGATGCAGCTATGCTATTGAGTCGAACTACACATTTT
CTGATGTACAAGAACGATAGCTCCAATGCTGAACCAATCCGTTTCTCGAC
AGTAATTGAGTTGTTCGGATCGAAGACGTCTGCAGACACACCAAGATACC
CGCTCGCTACAGCGCATCATGTGCTTCCAAACAGTATGTGCGGTTCCAAA
TCGTTCAAATTCTCACCTGACAAATGTGCTGCATCGTCGGAGGAAACTGT
GTTCGTCTTGCGAGTTGGCGGAGAGGACTTTGGTCTCATCGCAGGAGAAT
GGATTGATTTTGAATCTCCTCGGAAAGGAATTCCTGGCATTCCTGGTGAC
AAGAAGGCCGGAAGGCGGGGCGTGCTTGGCATCCCAGGAAGGCGGGGAGA
TCCGGGGTACTTAAGTCTGCGCATATGGTTGTTTGGTACGGACATGCCAA
AGAGGTGGCTCAACTTGAAGCCTTCACGCACGACGAAGAATCCTATGACA
TATTCGTTTGTACTACCGCCTCTCTCTGTGGCAGGAGGCATCTCTGCAGG
TGAAGTGGCATTCAGTCTCCGAACTTCGAAACTGCAGGTACATGATAGAA
GCCAACTGTTGGCAGCGTATCTGATAAGCACAGCAGCAGCAGCGCTGTTC
GCAACACTACAGCCAAGGTTTGTGCCTCGTGGCGGCGCGAAAGTTGGGAG
CCATGAAACGATGTATCCTGCTTGGTCAGTGCAACAGAAAGACTATGCGA
TGATTCGGGGAGCTGGTGGAGAAGTCCCCACCGAGCAGGGTACCCAAGGT
CTGGGAACGATGCTTCTCCCACTGAAAAGAAGCGCGTGGGACTGCCAAAA
CTTCCCAGGATCTCCAAGGCGGGTGCTTAAGTTCACCAGGGCTCCGAGGG
ATGCCAGGGACCGTGTCAGACGAACTGAGCACAATCCAATGTTCGGCGGG
ATTGTGGATGAGATTGGCGATCCTCAAGGAACGAGTGCtgGTACCGTTGG
TACCAATGGCGGATACAAACGGTACCTTGAAGTTCAACGGACGTTGGTAC
CTGAGATTGAGACGAGCGAAGAGTTGGATCGTCTTCGTCAACCAGAGCGA
TGA