Ggra2864.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2864.t1
Unique Name	Ggra2864.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	272

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000077_pilon	contig	tig00000077_pilon:226198..227013 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP165CT
PFAMs	SNARE_assoc
Max annot lvl	2759\|Eukaryota
Evalue	8.98e-56
EggNOG OGs	COG0398@1\|root,KOG3140@2759\|Eukaryota
Description	canonical Wnt signaling pathway involved in osteoblast differentiation
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2864	Ggra2864	Gracilaria gracilis GNS1m male	gene	tig00000077_pilon 226198..227013 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2864.t1.stop1	Ggra2864.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000077_pilon 226198..226200 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2864.t1.CDS1	Ggra2864.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000077_pilon 226198..227013 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2864.t1.exon1	Ggra2864.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000077_pilon 226198..227013 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2864.t1.start1	Ggra2864.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000077_pilon 227011..227013 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2864.t1	Ggra2864.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000077_pilon 226198..227013 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000077_pilon:226198..227013-
coding sequence from alignment at tig00000077_pilon:226198..227013-

mRNA sequence

>Ggra2864.t1 ID=Ggra2864.t1|Name=Ggra2864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=272bp
MCQNRSYGTSDVVPTQSSSPTASTDVPATDSSVSRSATGTNSKLVAAFLF
LAISLISGSAAAAAGVLNTDTLVQIARWFERLGPNAIYLYSVLYFLLELV
AVPALPLTLGSGYLFGLLDGTIAVSIASTFAATASFLIARYVFRASISRL
ANGNTRFRVIDRAIGREGFKFVLLLRLSPLLPFAISNYLYGLTSVKLRDY
IMGSWLGMLPGTIAYVSAGAAVNTLTDLHEGQSAVSPGLVITGLVATIAA
LASIGNIAREAIENVDEEEIP*

spliced messenger RNA

>Ggra2864.t1 ID=Ggra2864.t1|Name=Ggra2864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000077_pilon:226198..227013- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCAGAATCGGAGCTATGGAACTTCAGATGTGGTCCCTACGCAAAG
CTCTTCACCAACAGCTTCCACGGATGTCCCTGCAACGGACTCATCGGTCT
CGAGAAGCGCTACTGGAACAAATTCTAAACTTGTGGCTGCGTTTCTTTTC
CTAGCGATTTCGCTCATTTCGGGTAGCGCAGCTGCCGCTGCTGGAGTACT
CAATACAGACACTTTGGTGCAGATAGCCCGGTGGTTCGAACGACTGGGAC
CGAATGCCATATATCTGTACAGTGTCTTGTACTTCTTATTGGAGTTAGTA
GCTGTACCAGCATTGCCACTTACCCTGGGCTCGGGCTATCTTTTTGGATT
GTTGGATGGTACGATCGCCGTATCTATCGCATCTACTTTTGCAGCTACGG
CGTCGTTCTTGATTGCTCGATACGTGTTCCGTGCCAGCATATCTAGATTG
GCAAATGGCAATACACGCTTCCGTGTCATTGACCGTGCAATTGGTCGCGA
AGGGTTCAAGTTTGTCCTACTCTTGCGGCTATCACCCCTACTACCGTTTG
CGATATCCAACTACCTCTATGGACTTACTTCGGTGAAGCTTAGGGACTAT
ATAATGGGATCCTGGTTGGGAATGCTGCCTGGCACCATTGCTTATGTCAG
TGCTGGGGCTGCTGTTAATACGCTTACCGACCTTCATGAAGGCCAAAGTG
CTGTTAGTCCAGGTCTGGTGATCACCGGGTTGGTGGCTACCATTGCCGCA
TTGGCCAGTATTGGAAATATCGCACGGGAGGCAATCGAAAACGTTGATGA
AGAAGAAATACCGTAA

protein sequence of Ggra2864.t1

>Ggra2864.t1 ID=Ggra2864.t1|Name=Ggra2864.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MCQNRSYGTSDVVPTQSSSPTASTDVPATDSSVSRSATGTNSKLVAAFLF
LAISLISGSAAAAAGVLNTDTLVQIARWFERLGPNAIYLYSVLYFLLELV
AVPALPLTLGSGYLFGLLDGTIAVSIASTFAATASFLIARYVFRASISRL
ANGNTRFRVIDRAIGREGFKFVLLLRLSPLLPFAISNYLYGLTSVKLRDY
IMGSWLGMLPGTIAYVSAGAAVNTLTDLHEGQSAVSPGLVITGLVATIAA
LASIGNIAREAIENVDEEEIP*

mRNA from alignment at tig00000077_pilon:226198..227013-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2864.t1 ID=Ggra2864.t1|Name=Ggra2864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000077_pilon:226198..227013- (Gracilaria gracilis GNS1m male)
ATGTGTCAGAATCGGAGCTATGGAACTTCAGATGTGGTCCCTACGCAAAG
CTCTTCACCAACAGCTTCCACGGATGTCCCTGCAACGGACTCATCGGTCT
CGAGAAGCGCTACTGGAACAAATTCTAAACTTGTGGCTGCGTTTCTTTTC
CTAGCGATTTCGCTCATTTCGGGTAGCGCAGCTGCCGCTGCTGGAGTACT
CAATACAGACACTTTGGTGCAGATAGCCCGGTGGTTCGAACGACTGGGAC
CGAATGCCATATATCTGTACAGTGTCTTGTACTTCTTATTGGAGTTAGTA
GCTGTACCAGCATTGCCACTTACCCTGGGCTCGGGCTATCTTTTTGGATT
GTTGGATGGTACGATCGCCGTATCTATCGCATCTACTTTTGCAGCTACGG
CGTCGTTCTTGATTGCTCGATACGTGTTCCGTGCCAGCATATCTAGATTG
GCAAATGGCAATACACGCTTCCGTGTCATTGACCGTGCAATTGGTCGCGA
AGGGTTCAAGTTTGTCCTACTCTTGCGGCTATCACCCCTACTACCGTTTG
CGATATCCAACTACCTCTATGGACTTACTTCGGTGAAGCTTAGGGACTAT
ATAATGGGATCCTGGTTGGGAATGCTGCCTGGCACCATTGCTTATGTCAG
TGCTGGGGCTGCTGTTAATACGCTTACCGACCTTCATGAAGGCCAAAGTG
CTGTTAGTCCAGGTCTGGTGATCACCGGGTTGGTGGCTACCATTGCCGCA
TTGGCCAGTATTGGAAATATCGCACGGGAGGCAATCGAAAACGTTGATGA
AGAAGAAATACCGTAA

Coding sequence (CDS) from alignment at tig00000077_pilon:226198..227013-

>Ggra2864.t1 ID=Ggra2864.t1|Name=Ggra2864.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00000077_pilon:226198..227013- (Gracilaria gracilis GNS1m male)
ATGTGTCAGAATCGGAGCTATGGAACTTCAGATGTGGTCCCTACGCAAAG
CTCTTCACCAACAGCTTCCACGGATGTCCCTGCAACGGACTCATCGGTCT
CGAGAAGCGCTACTGGAACAAATTCTAAACTTGTGGCTGCGTTTCTTTTC
CTAGCGATTTCGCTCATTTCGGGTAGCGCAGCTGCCGCTGCTGGAGTACT
CAATACAGACACTTTGGTGCAGATAGCCCGGTGGTTCGAACGACTGGGAC
CGAATGCCATATATCTGTACAGTGTCTTGTACTTCTTATTGGAGTTAGTA
GCTGTACCAGCATTGCCACTTACCCTGGGCTCGGGCTATCTTTTTGGATT
GTTGGATGGTACGATCGCCGTATCTATCGCATCTACTTTTGCAGCTACGG
CGTCGTTCTTGATTGCTCGATACGTGTTCCGTGCCAGCATATCTAGATTG
GCAAATGGCAATACACGCTTCCGTGTCATTGACCGTGCAATTGGTCGCGA
AGGGTTCAAGTTTGTCCTACTCTTGCGGCTATCACCCCTACTACCGTTTG
CGATATCCAACTACCTCTATGGACTTACTTCGGTGAAGCTTAGGGACTAT
ATAATGGGATCCTGGTTGGGAATGCTGCCTGGCACCATTGCTTATGTCAG
TGCTGGGGCTGCTGTTAATACGCTTACCGACCTTCATGAAGGCCAAAGTG
CTGTTAGTCCAGGTCTGGTGATCACCGGGTTGGTGGCTACCATTGCCGCA
TTGGCCAGTATTGGAAATATCGCACGGGAGGCAATCGAAAACGTTGATGA
AGAAGAAATACCGTAA