|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 118161.KB235922_gene1664 |
| PFAMs | Big_5,GSDH,Malectin,TIG |
| Max annot lvl | 1117|Cyanobacteria |
| Evalue | 3.69e-60 |
| EggNOG OGs | COG2133@1|root,COG2982@1|root,COG3210@1|root,COG2133@2|Bacteria,COG2982@2|Bacteria,COG3210@2|Bacteria,1G17Y@1117|Cyanobacteria |
| Description | Glucose / Sorbosone dehydrogenase |
| COG category | G |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2863.t1.start1 | Ggra2863.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000077_pilon 222612..222614 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2863.t1.stop1 | Ggra2863.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000077_pilon 225237..225239 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra2863.t1 ID=Ggra2863.t1|Name=Ggra2863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp MRCIISLIGCLLLLGGGRGILGATSTIPFEHLAHAVPGKDVTVRDEDGDG FAKVSLNGELSHTHYFVPGPPAIVGKLISYEWVDNSQQAVIGNTLNLTYN FPVGVTTVTLTVTDNSGDTSSNDLSVTVLPSADQGAYLYFYDFSRISVGD GILPKTPSPQYGIAVDNVDFNHRDSFPDVPFISHGPFACKVVTEYLARVD DEFVFYVEHGDGVVILNVDGKSVLRELGTNSNSSLTTGRPQKLTKGKHKL DLVYYAPDPELAYLVLGVKSSNGLREPIPPESLSYESRMVLPTVHRITPA ESTIGGGGSLKIFGAGFTLNSKVTVGPYEVEEVFVRSESQIHIKVPLASG PADVLLSVRTSRGESNPTHFTYTEEALMPIKFKEDYVRYENGTLYPSEQF ATVTLGPDLRYYFGSLDTHIHVLTLEHKRMLVKGYCKSESAGPSRSITGV SFNPADRSLRVYIATNTFYWKNWGLMSDEDGWHNGKIETFVSKQDPETPE ICLVHEKDIVTGLPVSNHDHGVNSLIWDNDGNLYAQVGGFTNAGHSVPGD LVGGVPESVLSAATVVIHIQTPGFDGNIKYDQYEDPGTAKKITPDKFVEG FGYGFRNSYGSVYHSNGYIYATDNGPNKGYGKRSVTCNTEDEDPWHPDSL VLVHKDGYYGFPNRARGSYGDVRQCVYHAPTEKSKNGFTSALATFEASTN GLIEYTANCFQGQLRGDLLVSKYAVAGSGKLYRVSLDATGTKRVGDVEEL AHFSGLSIAMNPFGALVMPRVQQPNIAVLIPDEEDRKTNEPRITAVMPNR GIQGGGNQVAITGENLTKGARVYFGDAPCRIVRRSSTSDWLLCVAPPGEG AVNVIILTEGGTTQSIHKNYFYLNY* back to topspliced messenger RNA >Ggra2863.t1 ID=Ggra2863.t1|Name=Ggra2863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2628bp|location=Sequence derived from alignment at tig00000077_pilon:222612..225239+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGATGTATCATCTCCTTGATTGGGTGTTTATTGCTTCTGGGCGGAGG AAGAGGAATTCTTGGCGCTACATCGACAATTCCTTTCGAGCATCTAGCTC ACGCCGTACCTGGAAAGGATGTTACTGTGCGAGATGAAGATGGTGATGGC TTCGCCAAAGTTAGTTTGAATGGGGAACTGTCTCATACACATTATTTTGT ACCAGGCCCTCCTGCGATTGTGGGAAAGCTGATATCATATGAATGGGTCG ATAATAGTCAGCAAGCTGTTATTGGAAACACCTTGAATCTGACTTACAAT TTCCCCGTCGGAGTTACTACGGTTACTCTGACCGTCACAGACAACAGCGG TGATACGTCCTCCAACGATCTGTCTGTTACAGTTCTGCCATCGGCGGATC AGGGTGCATATCTGTACTTCTACGATTTCTCTCGCATTTCTGTTGGCGAC GGAATTTTACCGAAGACTCCATCCCCACAGTACGGTATCGCTGTGGACAA TGTAGATTTCAACCACAGGGATTCATTTCCTGATGTTCCTTTCATTTCTC ACGGTCCATTCGCATGCAAAGTGGTGACAGAATATCTTGCTAGAGTTGAC GATGAATTTGTGTTCTACGTTGAGCATGGAGATGGGGTTGTGATTTTGAA TGTGGACGGAAAAAGCGTTCTGCGCGAGCTGGGAACTAATTCAAACTCGA GTTTGACAACTGGGAGGCCGCAGAAGCTAACGAAAGGAAAGCATAAACTA GACCTTGTCTACTACGCCCCGGATCCTGAGCTTGCATATTTAGTTCTTGG GGTCAAATCTAGCAACGGCTTACGGGAACCTATTCCACCCGAATCTCTAA GTTATGAATCAAGAATGGTGCTCCCAACAGTACACAGAATCACACCGGCG GAGTCAACAATAGGGGGTGGAGGGTCTCTCAAGATTTTTGGAGCAGGGTT TACATTGAATTCTAAGGTAACTGTTGGTCCATACGAAGTTGAAGAGGTTT TCGTTCGGAGTGAATCCCAGATTCATATTAAGGTACCTCTGGCCTCAGGC CCCGCTGATGTTCTTTTAAGTGTCAGAACAAGTAGGGGAGAGAGTAATCC AACTCATTTCACATATACTGAAGAGGCCTTGATGCCTATCAAGTTCAAAG AGGATTACGTACGCTACGAAAATGGAACATTATACCCATCCGAGCAGTTT GCGACAGTTACTCTGGGCCCGGACTTGAGGTACTACTTTGGCTCCCTTGA TACCCATATCCATGTTCTCACTCTCGAACACAAGAGAATGCTTGTCAAGG GCTATTGCAAGTCGGAGAGCGCAGGACCATCAAGATCAATCACTGGAGTT TCTTTTAATCCTGCTGATAGATCTCTCAGAGTTTACATTGCGACCAATAC ATTTTACTGGAAGAATTGGGGGCTGATGTCCGATGAGGATGGCTGGCACA ACGGGAAGATAGAGACATTTGTTTCCAAACAGGATCCCGAAACCCCTGAA ATATGCCTGGTTCATGAGAAAGATATTGTAACCGGACTACCGGTTTCCAA TCACGACCATGGAGTCAATAGCTTGATATGGGACAATGATGGCAACCTGT ACGCTCAAGTCGGTGGTTTTACAAATGCAGGCCATTCTGTTCCGGGGGAT CTCGTTGGGGGTGTTCCAGAATCAGTTCTGAGCGCTGCCACTGTCGTGAT TCATATCCAAACACCGGGATTTGATGGAAATATCAAGTATGATCAATACG AAGATCCAGGAACTGCAAAAAAGATTACGCCAGACAAGTTTGTTGAAGGG TTCGGATATGGTTTCCGAAACTCCTACGGCTCTGTGTATCATAGCAACGG TTATATATATGCTACAGACAACGGACCCAACAAGGGGTATGGAAAACGGT CGGTCACTTGCAATACCGAAGACGAAGATCCGTGGCATCCGGATTCCCTG GTTTTGGTTCATAAAGACGGATATTACGGATTCCCCAACAGAGCTCGCGG TTCATATGGAGATGTTCGACAATGTGTGTATCACGCACCCACTGAGAAAA GCAAGAACGGTTTCACCTCTGCTTTGGCCACGTTTGAAGCTTCGACAAAT GGACTCATTGAATACACGGCAAACTGCTTTCAGGGACAGCTTCGAGGAGA TCTTCTCGTCTCTAAATATGCCGTTGCAGGTTCTGGGAAATTATACAGAG TGTCATTGGACGCGACAGGTACTAAGCGAGTGGGAGATGTTGAGGAACTG GCACATTTTTCCGGACTGAGCATCGCTATGAATCCTTTTGGTGCTTTAGT CATGCCGAGAGTGCAGCAACCAAACATTGCCGTCTTAATACCGGACGAAG AGGATAGAAAGACGAATGAACCGCGGATTACTGCAGTAATGCCCAACCGT GGCATACAAGGAGGGGGGAATCAAGTTGCAATTACTGGAGAAAATCTCAC GAAGGGAGCTAGAGTATATTTTGGAGATGCACCATGCAGGATAGTACGAC GAAGCTCAACAAGCGACTGGCTCCTCTGCGTTGCACCCCCTGGAGAAGGT GCTGTAAACGTCATAATCCTGACCGAAGGAGGAACAACACAGTCAATTCA TAAGAACTACTTTTACCTTAACTACTAG back to topprotein sequence of Ggra2863.t1 >Ggra2863.t1 ID=Ggra2863.t1|Name=Ggra2863.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=876bp
MRCIISLIGCLLLLGGGRGILGATSTIPFEHLAHAVPGKDVTVRDEDGDG FAKVSLNGELSHTHYFVPGPPAIVGKLISYEWVDNSQQAVIGNTLNLTYN FPVGVTTVTLTVTDNSGDTSSNDLSVTVLPSADQGAYLYFYDFSRISVGD GILPKTPSPQYGIAVDNVDFNHRDSFPDVPFISHGPFACKVVTEYLARVD DEFVFYVEHGDGVVILNVDGKSVLRELGTNSNSSLTTGRPQKLTKGKHKL DLVYYAPDPELAYLVLGVKSSNGLREPIPPESLSYESRMVLPTVHRITPA ESTIGGGGSLKIFGAGFTLNSKVTVGPYEVEEVFVRSESQIHIKVPLASG PADVLLSVRTSRGESNPTHFTYTEEALMPIKFKEDYVRYENGTLYPSEQF ATVTLGPDLRYYFGSLDTHIHVLTLEHKRMLVKGYCKSESAGPSRSITGV SFNPADRSLRVYIATNTFYWKNWGLMSDEDGWHNGKIETFVSKQDPETPE ICLVHEKDIVTGLPVSNHDHGVNSLIWDNDGNLYAQVGGFTNAGHSVPGD LVGGVPESVLSAATVVIHIQTPGFDGNIKYDQYEDPGTAKKITPDKFVEG FGYGFRNSYGSVYHSNGYIYATDNGPNKGYGKRSVTCNTEDEDPWHPDSL VLVHKDGYYGFPNRARGSYGDVRQCVYHAPTEKSKNGFTSALATFEASTN GLIEYTANCFQGQLRGDLLVSKYAVAGSGKLYRVSLDATGTKRVGDVEEL AHFSGLSIAMNPFGALVMPRVQQPNIAVLIPDEEDRKTNEPRITAVMPNR GIQGGGNQVAITGENLTKGARVYFGDAPCRIVRRSSTSDWLLCVAPPGEG AVNVIILTEGGTTQSIHKNYFYLNY* back to topmRNA from alignment at tig00000077_pilon:222612..225239+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra2863.t1 ID=Ggra2863.t1|Name=Ggra2863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2628bp|location=Sequence derived from alignment at tig00000077_pilon:222612..225239+ (Gracilaria gracilis GNS1m male) ATGCGATGTATCATCTCCTTGATTGGGTGTTTATTGCTTCTGGGCGGAGG
AAGAGGAATTCTTGGCGCTACATCGACAATTCCTTTCGAGCATCTAGCTC
ACGCCGTACCTGGAAAGGATGTTACTGTGCGAGATGAAGATGGTGATGGC
TTCGCCAAAGTTAGTTTGAATGGGGAACTGTCTCATACACATTATTTTGT
ACCAGGCCCTCCTGCGATTGTGGGAAAGCTGATATCATATGAATGGGTCG
ATAATAGTCAGCAAGCTGTTATTGGAAACACCTTGAATCTGACTTACAAT
TTCCCCGTCGGAGTTACTACGGTTACTCTGACCGTCACAGACAACAGCGG
TGATACGTCCTCCAACGATCTGTCTGTTACAGTTCTGCCATCGGCGGATC
AGGGTGCATATCTGTACTTCTACGATTTCTCTCGCATTTCTGTTGGCGAC
GGAATTTTACCGAAGACTCCATCCCCACAGTACGGTATCGCTGTGGACAA
TGTAGATTTCAACCACAGGGATTCATTTCCTGATGTTCCTTTCATTTCTC
ACGGTCCATTCGCATGCAAAGTGGTGACAGAATATCTTGCTAGAGTTGAC
GATGAATTTGTGTTCTACGTTGAGCATGGAGATGGGGTTGTGATTTTGAA
TGTGGACGGAAAAAGCGTTCTGCGCGAGCTGGGAACTAATTCAAACTCGA
GTTTGACAACTGGGAGGCCGCAGAAGCTAACGAAAGGAAAGCATAAACTA
GACCTTGTCTACTACGCCCCGGATCCTGAGCTTGCATATTTAGTTCTTGG
GGTCAAATCTAGCAACGGCTTACGGGAACCTATTCCACCCGAATCTCTAA
GTTATGAATCAAGAATGGTGCTCCCAACAGTACACAGAATCACACCGGCG
GAGTCAACAATAGGGGGTGGAGGGTCTCTCAAGATTTTTGGAGCAGGGTT
TACATTGAATTCTAAGGTAACTGTTGGTCCATACGAAGTTGAAGAGGTTT
TCGTTCGGAGTGAATCCCAGATTCATATTAAGGTACCTCTGGCCTCAGGC
CCCGCTGATGTTCTTTTAAGTGTCAGAACAAGTAGGGGAGAGAGTAATCC
AACTCATTTCACATATACTGAAGAGGCCTTGATGCCTATCAAGTTCAAAG
AGGATTACGTACGCTACGAAAATGGAACATTATACCCATCCGAGCAGTTT
GCGACAGTTACTCTGGGCCCGGACTTGAGGTACTACTTTGGCTCCCTTGA
TACCCATATCCATGTTCTCACTCTCGAACACAAGAGAATGCTTGTCAAGG
GCTATTGCAAGTCGGAGAGCGCAGGACCATCAAGATCAATCACTGGAGTT
TCTTTTAATCCTGCTGATAGATCTCTCAGAGTTTACATTGCGACCAATAC
ATTTTACTGGAAGAATTGGGGGCTGATGTCCGATGAGGATGGCTGGCACA
ACGGGAAGATAGAGACATTTGTTTCCAAACAGGATCCCGAAACCCCTGAA
ATATGCCTGGTTCATGAGAAAGATATTGTAACCGGACTACCGGTTTCCAA
TCACGACCATGGAGTCAATAGCTTGATATGGGACAATGATGGCAACCTGT
ACGCTCAAGTCGGTGGTTTTACAAATGCAGGCCATTCTGTTCCGGGGGAT
CTCGTTGGGGGTGTTCCAGAATCAGTTCTGAGCGCTGCCACTGTCGTGAT
TCATATCCAAACACCGGGATTTGATGGAAATATCAAGTATGATCAATACG
AAGATCCAGGAACTGCAAAAAAGATTACGCCAGACAAGTTTGTTGAAGGG
TTCGGATATGGTTTCCGAAACTCCTACGGCTCTGTGTATCATAGCAACGG
TTATATATATGCTACAGACAACGGACCCAACAAGGGGTATGGAAAACGGT
CGGTCACTTGCAATACCGAAGACGAAGATCCGTGGCATCCGGATTCCCTG
GTTTTGGTTCATAAAGACGGATATTACGGATTCCCCAACAGAGCTCGCGG
TTCATATGGAGATGTTCGACAATGTGTGTATCACGCACCCACTGAGAAAA
GCAAGAACGGTTTCACCTCTGCTTTGGCCACGTTTGAAGCTTCGACAAAT
GGACTCATTGAATACACGGCAAACTGCTTTCAGGGACAGCTTCGAGGAGA
TCTTCTCGTCTCTAAATATGCCGTTGCAGGTTCTGGGAAATTATACAGAG
TGTCATTGGACGCGACAGGTACTAAGCGAGTGGGAGATGTTGAGGAACTG
GCACATTTTTCCGGACTGAGCATCGCTATGAATCCTTTTGGTGCTTTAGT
CATGCCGAGAGTGCAGCAACCAAACATTGCCGTCTTAATACCGGACGAAG
AGGATAGAAAGACGAATGAACCGCGGATTACTGCAGTAATGCCCAACCGT
GGCATACAAGGAGGGGGGAATCAAGTTGCAATTACTGGAGAAAATCTCAC
GAAGGGAGCTAGAGTATATTTTGGAGATGCACCATGCAGGATAGTACGAC
GAAGCTCAACAAGCGACTGGCTCCTCTGCGTTGCACCCCCTGGAGAAGGT
GCTGTAAACGTCATAATCCTGACCGAAGGAGGAACAACACAGTCAATTCA
TAAGAACTACTTTTACCTTAACTACTAG back to topCoding sequence (CDS) from alignment at tig00000077_pilon:222612..225239+ >Ggra2863.t1 ID=Ggra2863.t1|Name=Ggra2863.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2628bp|location=Sequence derived from alignment at tig00000077_pilon:222612..225239+ (Gracilaria gracilis GNS1m male) ATGCGATGTATCATCTCCTTGATTGGGTGTTTATTGCTTCTGGGCGGAGG AAGAGGAATTCTTGGCGCTACATCGACAATTCCTTTCGAGCATCTAGCTC ACGCCGTACCTGGAAAGGATGTTACTGTGCGAGATGAAGATGGTGATGGC TTCGCCAAAGTTAGTTTGAATGGGGAACTGTCTCATACACATTATTTTGT ACCAGGCCCTCCTGCGATTGTGGGAAAGCTGATATCATATGAATGGGTCG ATAATAGTCAGCAAGCTGTTATTGGAAACACCTTGAATCTGACTTACAAT TTCCCCGTCGGAGTTACTACGGTTACTCTGACCGTCACAGACAACAGCGG TGATACGTCCTCCAACGATCTGTCTGTTACAGTTCTGCCATCGGCGGATC AGGGTGCATATCTGTACTTCTACGATTTCTCTCGCATTTCTGTTGGCGAC GGAATTTTACCGAAGACTCCATCCCCACAGTACGGTATCGCTGTGGACAA TGTAGATTTCAACCACAGGGATTCATTTCCTGATGTTCCTTTCATTTCTC ACGGTCCATTCGCATGCAAAGTGGTGACAGAATATCTTGCTAGAGTTGAC GATGAATTTGTGTTCTACGTTGAGCATGGAGATGGGGTTGTGATTTTGAA TGTGGACGGAAAAAGCGTTCTGCGCGAGCTGGGAACTAATTCAAACTCGA GTTTGACAACTGGGAGGCCGCAGAAGCTAACGAAAGGAAAGCATAAACTA GACCTTGTCTACTACGCCCCGGATCCTGAGCTTGCATATTTAGTTCTTGG GGTCAAATCTAGCAACGGCTTACGGGAACCTATTCCACCCGAATCTCTAA GTTATGAATCAAGAATGGTGCTCCCAACAGTACACAGAATCACACCGGCG GAGTCAACAATAGGGGGTGGAGGGTCTCTCAAGATTTTTGGAGCAGGGTT TACATTGAATTCTAAGGTAACTGTTGGTCCATACGAAGTTGAAGAGGTTT TCGTTCGGAGTGAATCCCAGATTCATATTAAGGTACCTCTGGCCTCAGGC CCCGCTGATGTTCTTTTAAGTGTCAGAACAAGTAGGGGAGAGAGTAATCC AACTCATTTCACATATACTGAAGAGGCCTTGATGCCTATCAAGTTCAAAG AGGATTACGTACGCTACGAAAATGGAACATTATACCCATCCGAGCAGTTT GCGACAGTTACTCTGGGCCCGGACTTGAGGTACTACTTTGGCTCCCTTGA TACCCATATCCATGTTCTCACTCTCGAACACAAGAGAATGCTTGTCAAGG GCTATTGCAAGTCGGAGAGCGCAGGACCATCAAGATCAATCACTGGAGTT TCTTTTAATCCTGCTGATAGATCTCTCAGAGTTTACATTGCGACCAATAC ATTTTACTGGAAGAATTGGGGGCTGATGTCCGATGAGGATGGCTGGCACA ACGGGAAGATAGAGACATTTGTTTCCAAACAGGATCCCGAAACCCCTGAA ATATGCCTGGTTCATGAGAAAGATATTGTAACCGGACTACCGGTTTCCAA TCACGACCATGGAGTCAATAGCTTGATATGGGACAATGATGGCAACCTGT ACGCTCAAGTCGGTGGTTTTACAAATGCAGGCCATTCTGTTCCGGGGGAT CTCGTTGGGGGTGTTCCAGAATCAGTTCTGAGCGCTGCCACTGTCGTGAT TCATATCCAAACACCGGGATTTGATGGAAATATCAAGTATGATCAATACG AAGATCCAGGAACTGCAAAAAAGATTACGCCAGACAAGTTTGTTGAAGGG TTCGGATATGGTTTCCGAAACTCCTACGGCTCTGTGTATCATAGCAACGG TTATATATATGCTACAGACAACGGACCCAACAAGGGGTATGGAAAACGGT CGGTCACTTGCAATACCGAAGACGAAGATCCGTGGCATCCGGATTCCCTG GTTTTGGTTCATAAAGACGGATATTACGGATTCCCCAACAGAGCTCGCGG TTCATATGGAGATGTTCGACAATGTGTGTATCACGCACCCACTGAGAAAA GCAAGAACGGTTTCACCTCTGCTTTGGCCACGTTTGAAGCTTCGACAAAT GGACTCATTGAATACACGGCAAACTGCTTTCAGGGACAGCTTCGAGGAGA TCTTCTCGTCTCTAAATATGCCGTTGCAGGTTCTGGGAAATTATACAGAG TGTCATTGGACGCGACAGGTACTAAGCGAGTGGGAGATGTTGAGGAACTG GCACATTTTTCCGGACTGAGCATCGCTATGAATCCTTTTGGTGCTTTAGT CATGCCGAGAGTGCAGCAACCAAACATTGCCGTCTTAATACCGGACGAAG AGGATAGAAAGACGAATGAACCGCGGATTACTGCAGTAATGCCCAACCGT GGCATACAAGGAGGGGGGAATCAAGTTGCAATTACTGGAGAAAATCTCAC GAAGGGAGCTAGAGTATATTTTGGAGATGCACCATGCAGGATAGTACGAC GAAGCTCAACAAGCGACTGGCTCCTCTGCGTTGCACCCCCTGGAGAAGGT GCTGTAAACGTCATAATCCTGACCGAAGGAGGAACAACACAGTCAATTCA TAAGAACTACTTTTACCTTAACTACTAG back to top
|