Ggra286.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra286.t1
Unique NameGgra286.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000112_piloncontigtig00000112_pilon:45642..47247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708279.1
Preferred nameCAT1
PFAMsCatalase,Catalase-rel
Max annot lvl2759|Eukaryota
KEGG rclassRC00034,RC00767,RC02141,RC02755
KEGG koko:K03781
KEGG ReactionR00009,R00602,R02670
KEGG Pathwayko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG ModuleM00532
GOsGO:0000302,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005777,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006950,GO:0006979,GO:0006995,GO:0007154,GO:0007275,GO:0007623,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009266,GO:0009267,GO:0009314,GO:0009409,GO:0009410,GO:0009416,GO:0009506,GO:0009507,GO:0009514,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009628,GO:0009631,GO:0009636,GO:0009648,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009791,GO:0009845,GO:0009941,GO:0009970,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010319,GO:0016020,GO:0016036,GO:0016043,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019725,GO:0020037,GO:0022607,GO:0022626,GO:0030054,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0033993,GO:0042221,GO:0042493,GO:0042542,GO:0042579,GO:0042592,GO:0042594,GO:0042737,GO:0042743,GO:0042744,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043562,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045454,GO:0046677,GO:0046686,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0048046,GO:0048511,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0051186,GO:0051187,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051290,GO:0051291,GO:0051716,GO:0055044,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070887,GO:0071496,GO:0071840,GO:0071944,GO:0072593,GO:0090351,GO:0097159,GO:0097237,GO:0097305,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1990748,GO:1990904
Evalue1.62e-152
EggNOG OGsCOG0753@1|root,KOG0047@2759|Eukaryota
EC1.11.1.6
Descriptioncatalase activity
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra286Ggra286Gracilaria gracilis GNS1m malegenetig00000112_pilon 45642..47247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra286.t1Ggra286.t1Gracilaria gracilis GNS1m malepolypeptidetig00000112_pilon 45642..47247 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra286.t1.start1Ggra286.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000112_pilon 45642..45644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra286.t1.CDS1Ggra286.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000112_pilon 45642..46229 +
Ggra286.t1.CDS2Ggra286.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000112_pilon 46411..47247 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra286.t1.exon1Ggra286.t1.exon1Gracilaria gracilis GNS1m maleexontig00000112_pilon 45642..46229 +
Ggra286.t1.exon2Ggra286.t1.exon2Gracilaria gracilis GNS1m maleexontig00000112_pilon 46411..47247 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra286.t1.intron1Ggra286.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000112_pilon 46230..46410 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra286.t1.stop1Ggra286.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000112_pilon 47245..47247 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra286.t1 ID=Ggra286.t1|Name=Ggra286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=475bp
MLPLPPSFLTSNAYRSTSNPSRSKVEKAELRSRLQLNALAMNPNVAAAIP
SDENDAVHVTTNSGAPVDDSLNSLTLGEHGPVLLSDFPLVERLANFDREV
IPERRVHSHGVAAKSVFVCTRDITKYTKADPFTHVGKRTPVAVRFSTVDH
SRGSPETLRDPRGFATKFYTGEGNWDLLGNLEPVFFIRDGIEFPEMGRET
YVKFHWVSEQGEHNFLDDEAKEVGGEDFSHATNNLIETIESGRFPAWQLK
IQLMDSATELNHSWGDPLDPTKTWPEKDFPMITVGRMVLNENMDNHFLEC
ESIAFSPGNIIPGITFSQDKLLQGRIFSYADTQRYRLGANYLQIPISAPR
CPFMNRQFDGAGATMMIKSEGNYFPSTRSRADTVGEEQVPNVKAKLGGVQ
MRTPLSKQNNFGQAGERWRSFDEARRQRLVARVVEALNTPKVSKKVKSTW
IGYWTQCDRELGSRIGTLMKMSNM*
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spliced messenger RNA

>Ggra286.t1 ID=Ggra286.t1|Name=Ggra286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000112_pilon:45642..47247+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCACTACCGCCATCTTTCTTAACGTCGAACGCGTATCGATCGAC
CAGCAACCCAAGTCGTTCCAAGGTGGAGAAAGCAGAGCTCAGATCGAGGC
TACAATTAAACGCACTTGCCATGAACCCCAACGTAGCAGCAGCTATTCCC
TCGGATGAGAACGACGCCGTGCACGTTACAACCAACAGCGGCGCGCCTGT
TGACGATTCTCTCAATTCTCTCACGTTGGGAGAGCACGGACCAGTCCTTC
TATCTGATTTTCCTCTCGTGGAAAGGCTTGCCAACTTCGATCGCGAAGTC
ATTCCTGAGCGTCGCGTTCATTCTCATGGAGTAGCTGCAAAGAGTGTTTT
CGTGTGTACCCGGGATATCACCAAGTACACAAAAGCCGATCCTTTTACAC
ATGTTGGGAAGCGCACCCCCGTTGCCGTCCGTTTCTCAACTGTTGATCAT
TCACGCGGCTCACCAGAAACGCTTCGTGACCCACGTGGTTTCGCCACGAA
GTTTTACACTGGTGAGGGTAACTGGGATCTGCTCGGTAACTTGGAGCCCG
TGTTCTTTATTCGAGATGGCATAGAGTTTCCGGAAATGGGTCGAGAAACA
TATGTCAAGTTCCATTGGGTTAGTGAACAAGGCGAACATAATTTTCTGGA
CGACGAGGCGAAAGAGGTCGGTGGAGAGGACTTCAGTCACGCTACGAATA
ATTTGATTGAAACTATCGAATCTGGACGTTTTCCCGCATGGCAACTCAAA
ATTCAGCTCATGGACTCCGCAACTGAGCTGAATCACTCATGGGGCGATCC
CCTTGATCCGACCAAAACATGGCCCGAGAAAGACTTTCCAATGATCACCG
TGGGCCGCATGGTACTGAATGAGAATATGGACAACCACTTTCTGGAATGT
GAGAGCATTGCGTTTTCGCCAGGAAATATCATTCCTGGAATCACATTTAG
CCAAGACAAGTTGCTTCAGGGAAGAATTTTCAGTTATGCAGACACACAGC
GCTATCGACTGGGTGCAAACTATTTGCAAATCCCCATCAGTGCCCCTCGA
TGTCCTTTTATGAACAGACAGTTTGATGGCGCAGGCGCAACCATGATGAT
AAAGAGTGAAGGGAACTATTTCCCTAGCACGAGAAGCAGGGCGGACACCG
TGGGCGAAGAACAGGTCCCAAATGTAAAAGCAAAGTTGGGCGGAGTTCAA
ATGAGAACACCTTTATCAAAGCAGAATAACTTTGGTCAGGCTGGTGAACG
CTGGCGTAGCTTTGACGAAGCAAGGCGACAAAGGCTGGTTGCAAGGGTAG
TAGAGGCTCTTAACACTCCAAAGGTTTCGAAGAAGGTGAAGAGTACCTGG
ATTGGATATTGGACGCAATGTGATCGAGAGCTTGGCTCCCGCATTGGTAC
TCTTATGAAAATGAGCAACATGTGA
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protein sequence of Ggra286.t1

>Ggra286.t1 ID=Ggra286.t1|Name=Ggra286.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MLPLPPSFLTSNAYRSTSNPSRSKVEKAELRSRLQLNALAMNPNVAAAIP
SDENDAVHVTTNSGAPVDDSLNSLTLGEHGPVLLSDFPLVERLANFDREV
IPERRVHSHGVAAKSVFVCTRDITKYTKADPFTHVGKRTPVAVRFSTVDH
SRGSPETLRDPRGFATKFYTGEGNWDLLGNLEPVFFIRDGIEFPEMGRET
YVKFHWVSEQGEHNFLDDEAKEVGGEDFSHATNNLIETIESGRFPAWQLK
IQLMDSATELNHSWGDPLDPTKTWPEKDFPMITVGRMVLNENMDNHFLEC
ESIAFSPGNIIPGITFSQDKLLQGRIFSYADTQRYRLGANYLQIPISAPR
CPFMNRQFDGAGATMMIKSEGNYFPSTRSRADTVGEEQVPNVKAKLGGVQ
MRTPLSKQNNFGQAGERWRSFDEARRQRLVARVVEALNTPKVSKKVKSTW
IGYWTQCDRELGSRIGTLMKMSNM*
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mRNA from alignment at tig00000112_pilon:45642..47247+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra286.t1 ID=Ggra286.t1|Name=Ggra286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1606bp|location=Sequence derived from alignment at tig00000112_pilon:45642..47247+ (Gracilaria gracilis GNS1m male)
ATGCTTCCACTACCGCCATCTTTCTTAACGTCGAACGCGTATCGATCGAC
CAGCAACCCAAGTCGTTCCAAGGTGGAGAAAGCAGAGCTCAGATCGAGGC
TACAATTAAACGCACTTGCCATGAACCCCAACGTAGCAGCAGCTATTCCC
TCGGATGAGAACGACGCCGTGCACGTTACAACCAACAGCGGCGCGCCTGT
TGACGATTCTCTCAATTCTCTCACGTTGGGAGAGCACGGACCAGTCCTTC
TATCTGATTTTCCTCTCGTGGAAAGGCTTGCCAACTTCGATCGCGAAGTC
ATTCCTGAGCGTCGCGTTCATTCTCATGGAGTAGCTGCAAAGAGTGTTTT
CGTGTGTACCCGGGATATCACCAAGTACACAAAAGCCGATCCTTTTACAC
ATGTTGGGAAGCGCACCCCCGTTGCCGTCCGTTTCTCAACTGTTGATCAT
TCACGCGGCTCACCAGAAACGCTTCGTGACCCACGTGGTTTCGCCACGAA
GTTTTACACTGGTGAGGGTAACTGGGATCTGCTCGGTAACTTGGAGCCCG
TGTTCTTTATTCGAGATGGCATAGAGTTTCCGGAAATGGTACATGCATTC
AAACCGAGCCCTAGAACAGAGAAACAAGAATGGCATCGTATTCTCGACTT
TCTTTCTTTTTATCCCGAGTGCATGCATATGATGACATGGGTTCTGACGT
CGGCATTCCAAAGAACTATACGACAATGCGAGGCTCAGGCGTCCATACGT
TTGTTTTCATCAACCAAAGGGTCGAGAAACATATGTCAAGTTCCATTGGG
TTAGTGAACAAGGCGAACATAATTTTCTGGACGACGAGGCGAAAGAGGTC
GGTGGAGAGGACTTCAGTCACGCTACGAATAATTTGATTGAAACTATCGA
ATCTGGACGTTTTCCCGCATGGCAACTCAAAATTCAGCTCATGGACTCCG
CAACTGAGCTGAATCACTCATGGGGCGATCCCCTTGATCCGACCAAAACA
TGGCCCGAGAAAGACTTTCCAATGATCACCGTGGGCCGCATGGTACTGAA
TGAGAATATGGACAACCACTTTCTGGAATGTGAGAGCATTGCGTTTTCGC
CAGGAAATATCATTCCTGGAATCACATTTAGCCAAGACAAGTTGCTTCAG
GGAAGAATTTTCAGTTATGCAGACACACAGCGCTATCGACTGGGTGCAAA
CTATTTGCAAATCCCCATCAGTGCCCCTCGATGTCCTTTTATGAACAGAC
AGTTTGATGGCGCAGGCGCAACCATGATGATAAAGAGTGAAGGGAACTAT
TTCCCTAGCACGAGAAGCAGGGCGGACACCGTGGGCGAAGAACAGGTCCC
AAATGTAAAAGCAAAGTTGGGCGGAGTTCAAATGAGAACACCTTTATCAA
AGCAGAATAACTTTGGTCAGGCTGGTGAACGCTGGCGTAGCTTTGACGAA
GCAAGGCGACAAAGGCTGGTTGCAAGGGTAGTAGAGGCTCTTAACACTCC
AAAGGTTTCGAAGAAGGTGAAGAGTACCTGGATTGGATATTGGACGCAAT
GTGATCGAGAGCTTGGCTCCCGCATTGGTACTCTTATGAAAATGAGCAAC
ATGTGA
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Coding sequence (CDS) from alignment at tig00000112_pilon:45642..47247+

>Ggra286.t1 ID=Ggra286.t1|Name=Ggra286.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00000112_pilon:45642..47247+ (Gracilaria gracilis GNS1m male)
ATGCTTCCACTACCGCCATCTTTCTTAACGTCGAACGCGTATCGATCGAC
CAGCAACCCAAGTCGTTCCAAGGTGGAGAAAGCAGAGCTCAGATCGAGGC
TACAATTAAACGCACTTGCCATGAACCCCAACGTAGCAGCAGCTATTCCC
TCGGATGAGAACGACGCCGTGCACGTTACAACCAACAGCGGCGCGCCTGT
TGACGATTCTCTCAATTCTCTCACGTTGGGAGAGCACGGACCAGTCCTTC
TATCTGATTTTCCTCTCGTGGAAAGGCTTGCCAACTTCGATCGCGAAGTC
ATTCCTGAGCGTCGCGTTCATTCTCATGGAGTAGCTGCAAAGAGTGTTTT
CGTGTGTACCCGGGATATCACCAAGTACACAAAAGCCGATCCTTTTACAC
ATGTTGGGAAGCGCACCCCCGTTGCCGTCCGTTTCTCAACTGTTGATCAT
TCACGCGGCTCACCAGAAACGCTTCGTGACCCACGTGGTTTCGCCACGAA
GTTTTACACTGGTGAGGGTAACTGGGATCTGCTCGGTAACTTGGAGCCCG
TGTTCTTTATTCGAGATGGCATAGAGTTTCCGGAAATGGGTCGAGAAACA
TATGTCAAGTTCCATTGGGTTAGTGAACAAGGCGAACATAATTTTCTGGA
CGACGAGGCGAAAGAGGTCGGTGGAGAGGACTTCAGTCACGCTACGAATA
ATTTGATTGAAACTATCGAATCTGGACGTTTTCCCGCATGGCAACTCAAA
ATTCAGCTCATGGACTCCGCAACTGAGCTGAATCACTCATGGGGCGATCC
CCTTGATCCGACCAAAACATGGCCCGAGAAAGACTTTCCAATGATCACCG
TGGGCCGCATGGTACTGAATGAGAATATGGACAACCACTTTCTGGAATGT
GAGAGCATTGCGTTTTCGCCAGGAAATATCATTCCTGGAATCACATTTAG
CCAAGACAAGTTGCTTCAGGGAAGAATTTTCAGTTATGCAGACACACAGC
GCTATCGACTGGGTGCAAACTATTTGCAAATCCCCATCAGTGCCCCTCGA
TGTCCTTTTATGAACAGACAGTTTGATGGCGCAGGCGCAACCATGATGAT
AAAGAGTGAAGGGAACTATTTCCCTAGCACGAGAAGCAGGGCGGACACCG
TGGGCGAAGAACAGGTCCCAAATGTAAAAGCAAAGTTGGGCGGAGTTCAA
ATGAGAACACCTTTATCAAAGCAGAATAACTTTGGTCAGGCTGGTGAACG
CTGGCGTAGCTTTGACGAAGCAAGGCGACAAAGGCTGGTTGCAAGGGTAG
TAGAGGCTCTTAACACTCCAAAGGTTTCGAAGAAGGTGAAGAGTACCTGG
ATTGGATATTGGACGCAATGTGATCGAGAGCTTGGCTCCCGCATTGGTAC
TCTTATGAAAATGAGCAACATGTGA
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