Ggra2838.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2838.t1
Unique Name	Ggra2838.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	821

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000123_pilon	contig	tig00000123_pilon:423395..425857 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX32338
PFAMs	SecA_DEAD,SecA_PP_bind,SecA_SW
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03070
KEGG TC	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4
KEGG Pathway	ko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG Module	M00335
Evalue	2.13e-288
EggNOG OGs	COG0653@1\|root,2QS7I@2759\|Eukaryota
Description	ATPase-coupled protein transmembrane transporter activity
COG category	U
BRITE	ko00000,ko00001,ko00002,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2838	Ggra2838	Gracilaria gracilis GNS1m male	gene	tig00000123_pilon 423395..425857 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2838.t1.stop1	Ggra2838.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000123_pilon 423395..423397 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2838.t1.CDS1	Ggra2838.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000123_pilon 423395..425857 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2838.t1.exon1	Ggra2838.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000123_pilon 423395..425857 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2838.t1.start1	Ggra2838.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000123_pilon 425855..425857 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2838.t1	Ggra2838.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000123_pilon 423395..425857 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000123_pilon:423395..425857-
coding sequence from alignment at tig00000123_pilon:423395..425857-

mRNA sequence

>Ggra2838.t1 ID=Ggra2838.t1|Name=Ggra2838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=821bp
MGGMALHDGCIAEMATGEGKTIVAVLAACLNAMSGNAVYVVTANDYLAKR
DSELVGQVHRFLGLSVGLIQSDMDTSQRQKAYSCDVIYVTNSELGFDYLR
DNLAMTDNDIVLKRPLSYCIVDEADSILIDEARTPLLISGKLPAQASKYS
TAKKAADALSRDVHYTVNEKEQSVLLTERGFFDLERALNVENLFDPTNPW
ASFVTNALKAKEVFKKDVNYIIASDDEEGQTEIQIVDEFTGRVMKGRRWS
DGLHQAVEAKEGITVNAESSNAARISYQAFFRLFEKLAGMTGTAATEAKE
LSDVYSLDVVVVPTALPMARKDYPDVVFRNEDGKYRAIMGEIARVAPTGR
PILIGTTSVESSETLSKLLADVGVDHDVLNAKPESALRESEIVAQAGRKY
SITIATNMAGRGTDILLGGNASYFARALARRELALLNKELSSVLQDIKQP
VLIEDEMLPVDISEEAAEALVQAVGTLADEDETRLSSLAKIDEVVGIAAE
YAPIPESELGLNLLRDAMSDIREELEEVVAEEREEVLDLGGLYVIGTDRA
ESRRVDNQLRGRAGRQGDPGGSRFFLALEDRLFRVFGGDKVTGILDTFRV
DENTPIENPLVNRTLDEAQRNVEAYFREIREQLFRYDSVFSRQREVFYTQ
RRKIVVADDHDLYDRFREECIKTISEIIPGYVGRGDVADDFEKLSSKLLQ
FFTGMSGIEASSLEEASNLKAHIEMQLDILLAQKRDGMDREKSGLSQEVL
RYLWLTQMDNLWLEHMKSLDYLKEFIVLRSYEGEDPLQAYQREGFELFTD
MVNSVRRNNVFSFYQYRLNN*

spliced messenger RNA

>Ggra2838.t1 ID=Ggra2838.t1|Name=Ggra2838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2463bp|location=Sequence derived from alignment at tig00000123_pilon:423395..425857- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGAATGGCTCTACACGACGGTTGTATCGCGGAAATGGCTACTGG
GGAAGGTAAAACGATTGTGGCGGTGCTTGCGGCCTGTTTGAATGCAATGT
CAGGCAATGCCGTGTACGTTGTTACGGCAAATGACTACTTGGCAAAAAGA
GATTCTGAGCTAGTGGGACAGGTACATCGCTTTCTTGGCCTGAGTGTTGG
ACTCATACAGTCCGACATGGACACCAGCCAGCGTCAGAAAGCGTACTCTT
GCGATGTCATCTACGTAACAAACTCTGAATTGGGCTTTGATTACCTGCGA
GACAACCTTGCAATGACGGATAACGATATCGTTTTGAAACGTCCTCTTTC
GTATTGCATCGTTGACGAAGCGGATTCTATCTTGATCGACGAGGCTCGAA
CTCCGCTTCTAATATCGGGGAAACTGCCAGCCCAGGCTTCAAAGTACTCC
ACTGCAAAGAAGGCAGCAGATGCTCTATCTCGAGATGTACATTACACCGT
CAACGAAAAGGAACAATCCGTTCTACTCACTGAGCGTGGTTTTTTTGATT
TGGAACGAGCCCTCAACGTGGAGAATCTGTTTGACCCTACTAATCCGTGG
GCGTCCTTCGTGACTAATGCGTTGAAGGCGAAGGAGGTTTTTAAGAAGGA
TGTCAATTATATAATCGCTTCTGACGATGAAGAAGGCCAGACCGAAATCC
AGATTGTCGACGAATTCACAGGCCGCGTTATGAAGGGGCGGCGGTGGAGT
GATGGTTTACACCAAGCGGTAGAGGCTAAAGAAGGAATTACGGTAAACGC
AGAATCGTCTAACGCTGCAAGAATATCATACCAGGCATTCTTCCGGTTGT
TCGAAAAGCTCGCTGGAATGACTGGAACGGCTGCAACGGAAGCTAAAGAA
CTTTCGGACGTATACAGCCTTGATGTAGTTGTTGTACCGACTGCTTTGCC
TATGGCTCGCAAAGACTATCCTGATGTAGTGTTTCGGAATGAAGACGGAA
AGTATAGAGCAATCATGGGCGAGATCGCTCGTGTAGCTCCGACTGGGCGC
CCTATTCTGATTGGAACGACTTCAGTTGAGTCGTCCGAGACGTTATCCAA
GCTCCTCGCTGATGTCGGCGTAGATCATGATGTTTTAAATGCTAAACCGG
AGTCCGCCTTGCGTGAATCAGAGATTGTCGCCCAAGCGGGGAGGAAGTAT
TCCATCACGATTGCAACCAATATGGCCGGTAGAGGAACCGACATTTTACT
GGGAGGAAACGCAAGCTACTTTGCTCGAGCTTTGGCGCGAAGAGAATTGG
CCCTCCTAAACAAGGAATTGAGTTCCGTGCTACAGGACATTAAACAGCCT
GTTCTTATCGAAGACGAAATGCTTCCTGTTGATATCTCAGAAGAGGCTGC
TGAGGCTCTTGTCCAGGCTGTGGGGACTTTGGCGGATGAAGATGAAACTC
GATTGTCATCGCTTGCAAAAATCGACGAGGTCGTAGGGATTGCTGCCGAA
TACGCACCGATACCGGAAAGCGAGCTTGGGCTTAACCTTTTACGGGACGC
CATGTCAGATATTAGGGAAGAACTGGAAGAAGTGGTTGCAGAAGAGAGGG
AGGAAGTGTTGGACTTGGGTGGATTGTACGTCATAGGAACTGATCGAGCA
GAAAGCAGAAGAGTGGATAACCAACTGAGAGGGCGTGCTGGTAGACAAGG
GGACCCTGGAGGTAGTAGGTTTTTCTTGGCACTTGAGGATCGCTTGTTTC
GCGTGTTTGGTGGAGACAAAGTGACAGGCATCCTTGACACATTTCGAGTT
GATGAAAACACGCCAATTGAGAATCCATTGGTTAATCGAACGCTCGATGA
GGCTCAAAGAAACGTCGAAGCATACTTCAGAGAAATTCGGGAGCAACTAT
TCCGATACGATTCGGTTTTCTCGCGACAGCGAGAAGTATTCTACACGCAG
CGAAGGAAGATCGTCGTAGCCGACGACCACGACCTATACGATCGCTTCCG
TGAAGAGTGCATCAAGACAATTTCTGAGATCATTCCAGGGTATGTTGGCA
GAGGAGATGTTGCAGATGATTTCGAAAAGCTGTCCTCCAAATTGCTACAG
TTCTTCACCGGAATGTCAGGGATTGAAGCCTCAAGTTTAGAAGAGGCCTC
TAACTTGAAGGCACATATAGAAATGCAGCTGGATATTCTACTGGCCCAAA
AGAGAGATGGTATGGATCGGGAAAAGAGCGGTCTTTCTCAAGAGGTTCTT
CGATATTTGTGGTTGACACAGATGGACAACCTATGGTTAGAGCATATGAA
GAGCCTGGACTATTTGAAGGAATTCATCGTGCTCCGTTCTTACGAGGGTG
AAGATCCGCTCCAGGCGTATCAGAGAGAAGGGTTTGAGTTGTTCACGGAT
ATGGTGAACAGTGTGCGACGTAACAATGTGTTTTCTTTCTACCAATATAG
ATTGAACAATTAG

protein sequence of Ggra2838.t1

>Ggra2838.t1 ID=Ggra2838.t1|Name=Ggra2838.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=821bp
MGGMALHDGCIAEMATGEGKTIVAVLAACLNAMSGNAVYVVTANDYLAKR
DSELVGQVHRFLGLSVGLIQSDMDTSQRQKAYSCDVIYVTNSELGFDYLR
DNLAMTDNDIVLKRPLSYCIVDEADSILIDEARTPLLISGKLPAQASKYS
TAKKAADALSRDVHYTVNEKEQSVLLTERGFFDLERALNVENLFDPTNPW
ASFVTNALKAKEVFKKDVNYIIASDDEEGQTEIQIVDEFTGRVMKGRRWS
DGLHQAVEAKEGITVNAESSNAARISYQAFFRLFEKLAGMTGTAATEAKE
LSDVYSLDVVVVPTALPMARKDYPDVVFRNEDGKYRAIMGEIARVAPTGR
PILIGTTSVESSETLSKLLADVGVDHDVLNAKPESALRESEIVAQAGRKY
SITIATNMAGRGTDILLGGNASYFARALARRELALLNKELSSVLQDIKQP
VLIEDEMLPVDISEEAAEALVQAVGTLADEDETRLSSLAKIDEVVGIAAE
YAPIPESELGLNLLRDAMSDIREELEEVVAEEREEVLDLGGLYVIGTDRA
ESRRVDNQLRGRAGRQGDPGGSRFFLALEDRLFRVFGGDKVTGILDTFRV
DENTPIENPLVNRTLDEAQRNVEAYFREIREQLFRYDSVFSRQREVFYTQ
RRKIVVADDHDLYDRFREECIKTISEIIPGYVGRGDVADDFEKLSSKLLQ
FFTGMSGIEASSLEEASNLKAHIEMQLDILLAQKRDGMDREKSGLSQEVL
RYLWLTQMDNLWLEHMKSLDYLKEFIVLRSYEGEDPLQAYQREGFELFTD
MVNSVRRNNVFSFYQYRLNN*

mRNA from alignment at tig00000123_pilon:423395..425857-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2838.t1 ID=Ggra2838.t1|Name=Ggra2838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2463bp|location=Sequence derived from alignment at tig00000123_pilon:423395..425857- (Gracilaria gracilis GNS1m male)
ATGGGTGGAATGGCTCTACACGACGGTTGTATCGCGGAAATGGCTACTGG
GGAAGGTAAAACGATTGTGGCGGTGCTTGCGGCCTGTTTGAATGCAATGT
CAGGCAATGCCGTGTACGTTGTTACGGCAAATGACTACTTGGCAAAAAGA
GATTCTGAGCTAGTGGGACAGGTACATCGCTTTCTTGGCCTGAGTGTTGG
ACTCATACAGTCCGACATGGACACCAGCCAGCGTCAGAAAGCGTACTCTT
GCGATGTCATCTACGTAACAAACTCTGAATTGGGCTTTGATTACCTGCGA
GACAACCTTGCAATGACGGATAACGATATCGTTTTGAAACGTCCTCTTTC
GTATTGCATCGTTGACGAAGCGGATTCTATCTTGATCGACGAGGCTCGAA
CTCCGCTTCTAATATCGGGGAAACTGCCAGCCCAGGCTTCAAAGTACTCC
ACTGCAAAGAAGGCAGCAGATGCTCTATCTCGAGATGTACATTACACCGT
CAACGAAAAGGAACAATCCGTTCTACTCACTGAGCGTGGTTTTTTTGATT
TGGAACGAGCCCTCAACGTGGAGAATCTGTTTGACCCTACTAATCCGTGG
GCGTCCTTCGTGACTAATGCGTTGAAGGCGAAGGAGGTTTTTAAGAAGGA
TGTCAATTATATAATCGCTTCTGACGATGAAGAAGGCCAGACCGAAATCC
AGATTGTCGACGAATTCACAGGCCGCGTTATGAAGGGGCGGCGGTGGAGT
GATGGTTTACACCAAGCGGTAGAGGCTAAAGAAGGAATTACGGTAAACGC
AGAATCGTCTAACGCTGCAAGAATATCATACCAGGCATTCTTCCGGTTGT
TCGAAAAGCTCGCTGGAATGACTGGAACGGCTGCAACGGAAGCTAAAGAA
CTTTCGGACGTATACAGCCTTGATGTAGTTGTTGTACCGACTGCTTTGCC
TATGGCTCGCAAAGACTATCCTGATGTAGTGTTTCGGAATGAAGACGGAA
AGTATAGAGCAATCATGGGCGAGATCGCTCGTGTAGCTCCGACTGGGCGC
CCTATTCTGATTGGAACGACTTCAGTTGAGTCGTCCGAGACGTTATCCAA
GCTCCTCGCTGATGTCGGCGTAGATCATGATGTTTTAAATGCTAAACCGG
AGTCCGCCTTGCGTGAATCAGAGATTGTCGCCCAAGCGGGGAGGAAGTAT
TCCATCACGATTGCAACCAATATGGCCGGTAGAGGAACCGACATTTTACT
GGGAGGAAACGCAAGCTACTTTGCTCGAGCTTTGGCGCGAAGAGAATTGG
CCCTCCTAAACAAGGAATTGAGTTCCGTGCTACAGGACATTAAACAGCCT
GTTCTTATCGAAGACGAAATGCTTCCTGTTGATATCTCAGAAGAGGCTGC
TGAGGCTCTTGTCCAGGCTGTGGGGACTTTGGCGGATGAAGATGAAACTC
GATTGTCATCGCTTGCAAAAATCGACGAGGTCGTAGGGATTGCTGCCGAA
TACGCACCGATACCGGAAAGCGAGCTTGGGCTTAACCTTTTACGGGACGC
CATGTCAGATATTAGGGAAGAACTGGAAGAAGTGGTTGCAGAAGAGAGGG
AGGAAGTGTTGGACTTGGGTGGATTGTACGTCATAGGAACTGATCGAGCA
GAAAGCAGAAGAGTGGATAACCAACTGAGAGGGCGTGCTGGTAGACAAGG
GGACCCTGGAGGTAGTAGGTTTTTCTTGGCACTTGAGGATCGCTTGTTTC
GCGTGTTTGGTGGAGACAAAGTGACAGGCATCCTTGACACATTTCGAGTT
GATGAAAACACGCCAATTGAGAATCCATTGGTTAATCGAACGCTCGATGA
GGCTCAAAGAAACGTCGAAGCATACTTCAGAGAAATTCGGGAGCAACTAT
TCCGATACGATTCGGTTTTCTCGCGACAGCGAGAAGTATTCTACACGCAG
CGAAGGAAGATCGTCGTAGCCGACGACCACGACCTATACGATCGCTTCCG
TGAAGAGTGCATCAAGACAATTTCTGAGATCATTCCAGGGTATGTTGGCA
GAGGAGATGTTGCAGATGATTTCGAAAAGCTGTCCTCCAAATTGCTACAG
TTCTTCACCGGAATGTCAGGGATTGAAGCCTCAAGTTTAGAAGAGGCCTC
TAACTTGAAGGCACATATAGAAATGCAGCTGGATATTCTACTGGCCCAAA
AGAGAGATGGTATGGATCGGGAAAAGAGCGGTCTTTCTCAAGAGGTTCTT
CGATATTTGTGGTTGACACAGATGGACAACCTATGGTTAGAGCATATGAA
GAGCCTGGACTATTTGAAGGAATTCATCGTGCTCCGTTCTTACGAGGGTG
AAGATCCGCTCCAGGCGTATCAGAGAGAAGGGTTTGAGTTGTTCACGGAT
ATGGTGAACAGTGTGCGACGTAACAATGTGTTTTCTTTCTACCAATATAG
ATTGAACAATTAG

Coding sequence (CDS) from alignment at tig00000123_pilon:423395..425857-

>Ggra2838.t1 ID=Ggra2838.t1|Name=Ggra2838.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2463bp|location=Sequence derived from alignment at tig00000123_pilon:423395..425857- (Gracilaria gracilis GNS1m male)
ATGGGTGGAATGGCTCTACACGACGGTTGTATCGCGGAAATGGCTACTGG
GGAAGGTAAAACGATTGTGGCGGTGCTTGCGGCCTGTTTGAATGCAATGT
CAGGCAATGCCGTGTACGTTGTTACGGCAAATGACTACTTGGCAAAAAGA
GATTCTGAGCTAGTGGGACAGGTACATCGCTTTCTTGGCCTGAGTGTTGG
ACTCATACAGTCCGACATGGACACCAGCCAGCGTCAGAAAGCGTACTCTT
GCGATGTCATCTACGTAACAAACTCTGAATTGGGCTTTGATTACCTGCGA
GACAACCTTGCAATGACGGATAACGATATCGTTTTGAAACGTCCTCTTTC
GTATTGCATCGTTGACGAAGCGGATTCTATCTTGATCGACGAGGCTCGAA
CTCCGCTTCTAATATCGGGGAAACTGCCAGCCCAGGCTTCAAAGTACTCC
ACTGCAAAGAAGGCAGCAGATGCTCTATCTCGAGATGTACATTACACCGT
CAACGAAAAGGAACAATCCGTTCTACTCACTGAGCGTGGTTTTTTTGATT
TGGAACGAGCCCTCAACGTGGAGAATCTGTTTGACCCTACTAATCCGTGG
GCGTCCTTCGTGACTAATGCGTTGAAGGCGAAGGAGGTTTTTAAGAAGGA
TGTCAATTATATAATCGCTTCTGACGATGAAGAAGGCCAGACCGAAATCC
AGATTGTCGACGAATTCACAGGCCGCGTTATGAAGGGGCGGCGGTGGAGT
GATGGTTTACACCAAGCGGTAGAGGCTAAAGAAGGAATTACGGTAAACGC
AGAATCGTCTAACGCTGCAAGAATATCATACCAGGCATTCTTCCGGTTGT
TCGAAAAGCTCGCTGGAATGACTGGAACGGCTGCAACGGAAGCTAAAGAA
CTTTCGGACGTATACAGCCTTGATGTAGTTGTTGTACCGACTGCTTTGCC
TATGGCTCGCAAAGACTATCCTGATGTAGTGTTTCGGAATGAAGACGGAA
AGTATAGAGCAATCATGGGCGAGATCGCTCGTGTAGCTCCGACTGGGCGC
CCTATTCTGATTGGAACGACTTCAGTTGAGTCGTCCGAGACGTTATCCAA
GCTCCTCGCTGATGTCGGCGTAGATCATGATGTTTTAAATGCTAAACCGG
AGTCCGCCTTGCGTGAATCAGAGATTGTCGCCCAAGCGGGGAGGAAGTAT
TCCATCACGATTGCAACCAATATGGCCGGTAGAGGAACCGACATTTTACT
GGGAGGAAACGCAAGCTACTTTGCTCGAGCTTTGGCGCGAAGAGAATTGG
CCCTCCTAAACAAGGAATTGAGTTCCGTGCTACAGGACATTAAACAGCCT
GTTCTTATCGAAGACGAAATGCTTCCTGTTGATATCTCAGAAGAGGCTGC
TGAGGCTCTTGTCCAGGCTGTGGGGACTTTGGCGGATGAAGATGAAACTC
GATTGTCATCGCTTGCAAAAATCGACGAGGTCGTAGGGATTGCTGCCGAA
TACGCACCGATACCGGAAAGCGAGCTTGGGCTTAACCTTTTACGGGACGC
CATGTCAGATATTAGGGAAGAACTGGAAGAAGTGGTTGCAGAAGAGAGGG
AGGAAGTGTTGGACTTGGGTGGATTGTACGTCATAGGAACTGATCGAGCA
GAAAGCAGAAGAGTGGATAACCAACTGAGAGGGCGTGCTGGTAGACAAGG
GGACCCTGGAGGTAGTAGGTTTTTCTTGGCACTTGAGGATCGCTTGTTTC
GCGTGTTTGGTGGAGACAAAGTGACAGGCATCCTTGACACATTTCGAGTT
GATGAAAACACGCCAATTGAGAATCCATTGGTTAATCGAACGCTCGATGA
GGCTCAAAGAAACGTCGAAGCATACTTCAGAGAAATTCGGGAGCAACTAT
TCCGATACGATTCGGTTTTCTCGCGACAGCGAGAAGTATTCTACACGCAG
CGAAGGAAGATCGTCGTAGCCGACGACCACGACCTATACGATCGCTTCCG
TGAAGAGTGCATCAAGACAATTTCTGAGATCATTCCAGGGTATGTTGGCA
GAGGAGATGTTGCAGATGATTTCGAAAAGCTGTCCTCCAAATTGCTACAG
TTCTTCACCGGAATGTCAGGGATTGAAGCCTCAAGTTTAGAAGAGGCCTC
TAACTTGAAGGCACATATAGAAATGCAGCTGGATATTCTACTGGCCCAAA
AGAGAGATGGTATGGATCGGGAAAAGAGCGGTCTTTCTCAAGAGGTTCTT
CGATATTTGTGGTTGACACAGATGGACAACCTATGGTTAGAGCATATGAA
GAGCCTGGACTATTTGAAGGAATTCATCGTGCTCCGTTCTTACGAGGGTG
AAGATCCGCTCCAGGCGTATCAGAGAGAAGGGTTTGAGTTGTTCACGGAT
ATGGTGAACAGTGTGCGACGTAACAATGTGTTTTCTTTCTACCAATATAG
ATTGAACAATTAG