Ggra2837.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2837.t1
Unique NameGgra2837.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:422447..423331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS091CT
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15108
KEGG TC2.A.29.16,2.A.29.28
Evalue5.34e-70
EggNOG OGsKOG0752@1|root,KOG0752@2759|Eukaryota
Descriptionmitochondrial transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2837Ggra2837Gracilaria gracilis GNS1m malegenetig00000123_pilon 422447..423331 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2837.t1.start1Ggra2837.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 422447..422449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2837.t1.CDS1Ggra2837.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 422447..423331 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2837.t1.exon1Ggra2837.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 422447..423331 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2837.t1.stop1Ggra2837.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 423329..423331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2837.t1Ggra2837.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 422447..423331 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2837.t1 ID=Ggra2837.t1|Name=Ggra2837.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MTNSPKSLSPARDLLCGAVAGITARLVVAPLDMLKIRFQVQSETKGLYQY
QYITSALRTIVQHEGVRALWKGNLSAMLMVTPYSAIQLAAFYQLQQAIRV
TQEPYASFCSLSVGAISSCCATICTYPLDLLRTRFAAQTEPRQYVSLRHA
TTVIYSREGVKGFYAGLQPTLLSVVPYMSIQFAVYEGAKQQILSKSARQD
LHPTESVTTGAVSGVVSKLFTLPLDNAKKIMQVGGQFQTTNTTAYRGMSD
VLTQVWSIYGWRGWFRGAMPSILKAAPNSAITFSVYEAVKRHFL*
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spliced messenger RNA

>Ggra2837.t1 ID=Ggra2837.t1|Name=Ggra2837.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000123_pilon:422447..423331+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAACTCACCGAAAAGCCTGTCGCCCGCTCGCGATCTTCTCTGCGG
TGCCGTGGCAGGCATCACAGCTCGTTTAGTGGTTGCGCCATTGGACATGC
TCAAGATTCGCTTTCAGGTGCAATCCGAAACCAAAGGCCTGTATCAATAC
CAGTACATCACGTCTGCTCTTCGCACCATCGTACAGCATGAGGGGGTCAG
GGCGCTCTGGAAAGGAAATCTGTCTGCGATGCTCATGGTCACACCGTATT
CCGCGATACAACTCGCTGCCTTTTACCAACTTCAACAAGCAATACGAGTT
ACACAGGAGCCCTATGCGTCTTTCTGTTCTCTCTCTGTTGGAGCTATTTC
GAGCTGCTGTGCAACCATCTGTACATACCCCCTTGACCTGCTCCGAACGC
GTTTTGCTGCCCAAACAGAACCTCGCCAATATGTCAGTCTAAGACATGCC
ACGACTGTCATCTACTCTCGCGAAGGTGTAAAGGGTTTCTATGCAGGCCT
GCAGCCCACGCTTTTATCCGTAGTGCCCTATATGTCGATTCAATTCGCCG
TTTACGAAGGTGCTAAACAACAAATACTTTCAAAAAGTGCTAGACAAGAT
CTACACCCAACGGAGAGCGTTACTACCGGGGCCGTGTCCGGTGTAGTATC
GAAGTTGTTCACCTTGCCACTCGACAACGCCAAGAAAATCATGCAGGTGG
GAGGTCAATTTCAAACCACCAACACGACAGCATATCGCGGGATGAGCGAT
GTGCTAACTCAGGTTTGGAGCATCTACGGATGGCGCGGTTGGTTTAGAGG
AGCCATGCCTAGCATTTTGAAAGCTGCTCCCAATTCAGCCATCACGTTTT
CAGTGTATGAAGCTGTCAAGAGACACTTCTTGTAG
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protein sequence of Ggra2837.t1

>Ggra2837.t1 ID=Ggra2837.t1|Name=Ggra2837.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MTNSPKSLSPARDLLCGAVAGITARLVVAPLDMLKIRFQVQSETKGLYQY
QYITSALRTIVQHEGVRALWKGNLSAMLMVTPYSAIQLAAFYQLQQAIRV
TQEPYASFCSLSVGAISSCCATICTYPLDLLRTRFAAQTEPRQYVSLRHA
TTVIYSREGVKGFYAGLQPTLLSVVPYMSIQFAVYEGAKQQILSKSARQD
LHPTESVTTGAVSGVVSKLFTLPLDNAKKIMQVGGQFQTTNTTAYRGMSD
VLTQVWSIYGWRGWFRGAMPSILKAAPNSAITFSVYEAVKRHFL*
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mRNA from alignment at tig00000123_pilon:422447..423331+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2837.t1 ID=Ggra2837.t1|Name=Ggra2837.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000123_pilon:422447..423331+ (Gracilaria gracilis GNS1m male)
ATGACTAACTCACCGAAAAGCCTGTCGCCCGCTCGCGATCTTCTCTGCGG
TGCCGTGGCAGGCATCACAGCTCGTTTAGTGGTTGCGCCATTGGACATGC
TCAAGATTCGCTTTCAGGTGCAATCCGAAACCAAAGGCCTGTATCAATAC
CAGTACATCACGTCTGCTCTTCGCACCATCGTACAGCATGAGGGGGTCAG
GGCGCTCTGGAAAGGAAATCTGTCTGCGATGCTCATGGTCACACCGTATT
CCGCGATACAACTCGCTGCCTTTTACCAACTTCAACAAGCAATACGAGTT
ACACAGGAGCCCTATGCGTCTTTCTGTTCTCTCTCTGTTGGAGCTATTTC
GAGCTGCTGTGCAACCATCTGTACATACCCCCTTGACCTGCTCCGAACGC
GTTTTGCTGCCCAAACAGAACCTCGCCAATATGTCAGTCTAAGACATGCC
ACGACTGTCATCTACTCTCGCGAAGGTGTAAAGGGTTTCTATGCAGGCCT
GCAGCCCACGCTTTTATCCGTAGTGCCCTATATGTCGATTCAATTCGCCG
TTTACGAAGGTGCTAAACAACAAATACTTTCAAAAAGTGCTAGACAAGAT
CTACACCCAACGGAGAGCGTTACTACCGGGGCCGTGTCCGGTGTAGTATC
GAAGTTGTTCACCTTGCCACTCGACAACGCCAAGAAAATCATGCAGGTGG
GAGGTCAATTTCAAACCACCAACACGACAGCATATCGCGGGATGAGCGAT
GTGCTAACTCAGGTTTGGAGCATCTACGGATGGCGCGGTTGGTTTAGAGG
AGCCATGCCTAGCATTTTGAAAGCTGCTCCCAATTCAGCCATCACGTTTT
CAGTGTATGAAGCTGTCAAGAGACACTTCTTGTAG
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Coding sequence (CDS) from alignment at tig00000123_pilon:422447..423331+

>Ggra2837.t1 ID=Ggra2837.t1|Name=Ggra2837.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000123_pilon:422447..423331+ (Gracilaria gracilis GNS1m male)
ATGACTAACTCACCGAAAAGCCTGTCGCCCGCTCGCGATCTTCTCTGCGG
TGCCGTGGCAGGCATCACAGCTCGTTTAGTGGTTGCGCCATTGGACATGC
TCAAGATTCGCTTTCAGGTGCAATCCGAAACCAAAGGCCTGTATCAATAC
CAGTACATCACGTCTGCTCTTCGCACCATCGTACAGCATGAGGGGGTCAG
GGCGCTCTGGAAAGGAAATCTGTCTGCGATGCTCATGGTCACACCGTATT
CCGCGATACAACTCGCTGCCTTTTACCAACTTCAACAAGCAATACGAGTT
ACACAGGAGCCCTATGCGTCTTTCTGTTCTCTCTCTGTTGGAGCTATTTC
GAGCTGCTGTGCAACCATCTGTACATACCCCCTTGACCTGCTCCGAACGC
GTTTTGCTGCCCAAACAGAACCTCGCCAATATGTCAGTCTAAGACATGCC
ACGACTGTCATCTACTCTCGCGAAGGTGTAAAGGGTTTCTATGCAGGCCT
GCAGCCCACGCTTTTATCCGTAGTGCCCTATATGTCGATTCAATTCGCCG
TTTACGAAGGTGCTAAACAACAAATACTTTCAAAAAGTGCTAGACAAGAT
CTACACCCAACGGAGAGCGTTACTACCGGGGCCGTGTCCGGTGTAGTATC
GAAGTTGTTCACCTTGCCACTCGACAACGCCAAGAAAATCATGCAGGTGG
GAGGTCAATTTCAAACCACCAACACGACAGCATATCGCGGGATGAGCGAT
GTGCTAACTCAGGTTTGGAGCATCTACGGATGGCGCGGTTGGTTTAGAGG
AGCCATGCCTAGCATTTTGAAAGCTGCTCCCAATTCAGCCATCACGTTTT
CAGTGTATGAAGCTGTCAAGAGACACTTCTTGTAG
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