Ggra2836.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2836.t1
Unique NameGgra2836.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:420292..421791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708866.1
Preferred nameLEU1
PFAMsAconitase,Aconitase_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00497,RC00976,RC00977,RC01041,RC01046,RC03072
KEGG koko:K00749,ko:K01702,ko:K01703
KEGG ReactionR03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170
KEGG Pathwayko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230
KEGG ModuleM00432,M00535
GOsGO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010494,GO:0016053,GO:0016143,GO:0016144,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0032991,GO:0035770,GO:0036464,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0046686,GO:0050486,GO:0050896,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1901659,GO:1990904
Evalue7.79e-240
EggNOG OGsCOG0065@1|root,KOG0454@2759|Eukaryota
EC2.4.1.183,4.2.1.33,4.2.1.35
Description3-isopropylmalate dehydratase activity
COG categoryE
CAZyGT5
BiGG ReactioniMM904.YGL009C,iND750.YGL009C
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2836Ggra2836Gracilaria gracilis GNS1m malegenetig00000123_pilon 420292..421791 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2836.t1.stop1Ggra2836.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 420292..420294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2836.t1.CDS1Ggra2836.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 420292..421791 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2836.t1.exon1Ggra2836.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 420292..421791 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2836.t1.start1Ggra2836.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 421789..421791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2836.t1Ggra2836.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 420292..421791 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2836.t1 ID=Ggra2836.t1|Name=Ggra2836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp
MAFVAPLPLRASTSTRSDAFRAGRRPVVAVAAPSRANTVPTTAPAHPMTI
TEKLLARGARKEYVKPGENVWVNVDKLMTHDVCGPPTIGIFKREFGADAK
VWDREGVIIIPDHYIFTEDKRANRNVETLREFAAEQDLKYYYDIKDLSDF
RANPDYKGVCHVALAQEGHTASGEILFGTDSHTCNAGAFGMFATGIGNTD
AGFILGTGKLLVKVPHTMRFQLNGDMPDYLLAKDLILNIIGDIGVGGATY
RAMEFAGSTIAQFSMEERMTLCNMAVEAGGKNGLIEPDHVTEAYLAARGT
KPTAMFKSDQQASYFADYTYDVSKIEPIVAKPHSPDNRALARECSTVRTD
RVYVGSCTGGKTEDFLAAARVLQGRKVSVPTFLVPATQRVYDDIERLRIN
GETLKEIFHNAGCIGLGNPGCAACLGGPSDTFARLNEPLVCVSTTNRNFP
GRMGHKEGQIYLASPYTAAASAVTGYVTDPREVYDFDLLKRHPTESLAD*
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spliced messenger RNA

>Ggra2836.t1 ID=Ggra2836.t1|Name=Ggra2836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000123_pilon:420292..421791- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTGTGGCTCCGCTACCTCTTCGTGCGAGTACATCCACACGGTC
AGATGCGTTCCGCGCGGGTCGGCGGCCTGTCGTTGCCGTTGCAGCGCCGT
CGCGTGCGAATACCGTCCCTACTACCGCACCAGCGCACCCGATGACAATA
ACCGAGAAGTTGCTTGCTCGTGGTGCCCGAAAGGAATACGTGAAACCTGG
AGAAAATGTGTGGGTTAATGTCGACAAACTCATGACGCATGATGTTTGCG
GCCCGCCCACGATTGGTATATTTAAGCGCGAATTCGGTGCGGATGCAAAG
GTTTGGGATCGGGAGGGTGTTATTATTATCCCGGATCATTACATCTTTAC
CGAGGATAAGCGAGCGAATCGTAACGTTGAGACGCTTCGTGAATTTGCTG
CAGAGCAGGATCTCAAGTACTATTATGACATTAAGGACTTGTCTGACTTT
AGAGCCAATCCTGACTACAAAGGCGTTTGCCATGTAGCTCTTGCTCAGGA
GGGACACACCGCCAGTGGTGAGATTTTGTTTGGAACGGACTCTCATACTT
GCAATGCAGGCGCGTTTGGAATGTTCGCCACTGGTATCGGAAACACGGAT
GCCGGTTTCATTCTTGGTACCGGGAAACTGCTGGTGAAAGTGCCGCACAC
CATGAGATTTCAGCTTAACGGGGATATGCCGGACTATCTCTTAGCAAAGG
ATCTTATTTTGAATATCATTGGTGATATCGGTGTCGGTGGGGCCACATAT
AGGGCAATGGAGTTCGCGGGCTCCACGATTGCACAGTTCTCTATGGAAGA
GAGGATGACCTTGTGCAACATGGCTGTCGAAGCGGGCGGGAAGAACGGTC
TTATCGAACCTGACCATGTTACAGAAGCTTATTTGGCTGCACGCGGAACA
AAGCCTACCGCAATGTTCAAATCTGACCAGCAGGCAAGCTACTTCGCCGA
CTACACGTATGATGTTTCGAAGATTGAGCCCATTGTGGCCAAACCTCACT
CTCCTGATAACCGAGCATTGGCTCGCGAGTGCTCAACCGTACGCACTGAT
CGTGTATATGTTGGTTCTTGCACCGGCGGAAAGACCGAGGATTTCCTGGC
CGCTGCACGAGTACTTCAAGGGCGAAAGGTATCTGTGCCCACTTTTTTGG
TACCTGCCACGCAAAGAGTATATGATGACATTGAGAGGCTGCGTATCAAC
GGAGAGACACTCAAGGAGATCTTTCATAATGCTGGTTGCATCGGTCTTGG
AAACCCAGGGTGTGCGGCTTGTCTTGGTGGACCATCAGATACTTTCGCTC
GTTTGAATGAACCGCTTGTGTGCGTCTCAACCACCAACAGAAACTTCCCG
GGTCGTATGGGTCATAAGGAAGGCCAAATATATCTCGCTTCTCCATACAC
TGCTGCTGCCTCGGCTGTGACTGGCTATGTGACTGATCCTCGTGAAGTTT
ATGACTTTGACCTACTCAAGCGCCATCCTACCGAGAGTCTTGCTGATTAA
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protein sequence of Ggra2836.t1

>Ggra2836.t1 ID=Ggra2836.t1|Name=Ggra2836.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=500bp
MAFVAPLPLRASTSTRSDAFRAGRRPVVAVAAPSRANTVPTTAPAHPMTI
TEKLLARGARKEYVKPGENVWVNVDKLMTHDVCGPPTIGIFKREFGADAK
VWDREGVIIIPDHYIFTEDKRANRNVETLREFAAEQDLKYYYDIKDLSDF
RANPDYKGVCHVALAQEGHTASGEILFGTDSHTCNAGAFGMFATGIGNTD
AGFILGTGKLLVKVPHTMRFQLNGDMPDYLLAKDLILNIIGDIGVGGATY
RAMEFAGSTIAQFSMEERMTLCNMAVEAGGKNGLIEPDHVTEAYLAARGT
KPTAMFKSDQQASYFADYTYDVSKIEPIVAKPHSPDNRALARECSTVRTD
RVYVGSCTGGKTEDFLAAARVLQGRKVSVPTFLVPATQRVYDDIERLRIN
GETLKEIFHNAGCIGLGNPGCAACLGGPSDTFARLNEPLVCVSTTNRNFP
GRMGHKEGQIYLASPYTAAASAVTGYVTDPREVYDFDLLKRHPTESLAD*
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mRNA from alignment at tig00000123_pilon:420292..421791-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2836.t1 ID=Ggra2836.t1|Name=Ggra2836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000123_pilon:420292..421791- (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTGGCTCCGCTACCTCTTCGTGCGAGTACATCCACACGGTC
AGATGCGTTCCGCGCGGGTCGGCGGCCTGTCGTTGCCGTTGCAGCGCCGT
CGCGTGCGAATACCGTCCCTACTACCGCACCAGCGCACCCGATGACAATA
ACCGAGAAGTTGCTTGCTCGTGGTGCCCGAAAGGAATACGTGAAACCTGG
AGAAAATGTGTGGGTTAATGTCGACAAACTCATGACGCATGATGTTTGCG
GCCCGCCCACGATTGGTATATTTAAGCGCGAATTCGGTGCGGATGCAAAG
GTTTGGGATCGGGAGGGTGTTATTATTATCCCGGATCATTACATCTTTAC
CGAGGATAAGCGAGCGAATCGTAACGTTGAGACGCTTCGTGAATTTGCTG
CAGAGCAGGATCTCAAGTACTATTATGACATTAAGGACTTGTCTGACTTT
AGAGCCAATCCTGACTACAAAGGCGTTTGCCATGTAGCTCTTGCTCAGGA
GGGACACACCGCCAGTGGTGAGATTTTGTTTGGAACGGACTCTCATACTT
GCAATGCAGGCGCGTTTGGAATGTTCGCCACTGGTATCGGAAACACGGAT
GCCGGTTTCATTCTTGGTACCGGGAAACTGCTGGTGAAAGTGCCGCACAC
CATGAGATTTCAGCTTAACGGGGATATGCCGGACTATCTCTTAGCAAAGG
ATCTTATTTTGAATATCATTGGTGATATCGGTGTCGGTGGGGCCACATAT
AGGGCAATGGAGTTCGCGGGCTCCACGATTGCACAGTTCTCTATGGAAGA
GAGGATGACCTTGTGCAACATGGCTGTCGAAGCGGGCGGGAAGAACGGTC
TTATCGAACCTGACCATGTTACAGAAGCTTATTTGGCTGCACGCGGAACA
AAGCCTACCGCAATGTTCAAATCTGACCAGCAGGCAAGCTACTTCGCCGA
CTACACGTATGATGTTTCGAAGATTGAGCCCATTGTGGCCAAACCTCACT
CTCCTGATAACCGAGCATTGGCTCGCGAGTGCTCAACCGTACGCACTGAT
CGTGTATATGTTGGTTCTTGCACCGGCGGAAAGACCGAGGATTTCCTGGC
CGCTGCACGAGTACTTCAAGGGCGAAAGGTATCTGTGCCCACTTTTTTGG
TACCTGCCACGCAAAGAGTATATGATGACATTGAGAGGCTGCGTATCAAC
GGAGAGACACTCAAGGAGATCTTTCATAATGCTGGTTGCATCGGTCTTGG
AAACCCAGGGTGTGCGGCTTGTCTTGGTGGACCATCAGATACTTTCGCTC
GTTTGAATGAACCGCTTGTGTGCGTCTCAACCACCAACAGAAACTTCCCG
GGTCGTATGGGTCATAAGGAAGGCCAAATATATCTCGCTTCTCCATACAC
TGCTGCTGCCTCGGCTGTGACTGGCTATGTGACTGATCCTCGTGAAGTTT
ATGACTTTGACCTACTCAAGCGCCATCCTACCGAGAGTCTTGCTGATTAA
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Coding sequence (CDS) from alignment at tig00000123_pilon:420292..421791-

>Ggra2836.t1 ID=Ggra2836.t1|Name=Ggra2836.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00000123_pilon:420292..421791- (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTGGCTCCGCTACCTCTTCGTGCGAGTACATCCACACGGTC
AGATGCGTTCCGCGCGGGTCGGCGGCCTGTCGTTGCCGTTGCAGCGCCGT
CGCGTGCGAATACCGTCCCTACTACCGCACCAGCGCACCCGATGACAATA
ACCGAGAAGTTGCTTGCTCGTGGTGCCCGAAAGGAATACGTGAAACCTGG
AGAAAATGTGTGGGTTAATGTCGACAAACTCATGACGCATGATGTTTGCG
GCCCGCCCACGATTGGTATATTTAAGCGCGAATTCGGTGCGGATGCAAAG
GTTTGGGATCGGGAGGGTGTTATTATTATCCCGGATCATTACATCTTTAC
CGAGGATAAGCGAGCGAATCGTAACGTTGAGACGCTTCGTGAATTTGCTG
CAGAGCAGGATCTCAAGTACTATTATGACATTAAGGACTTGTCTGACTTT
AGAGCCAATCCTGACTACAAAGGCGTTTGCCATGTAGCTCTTGCTCAGGA
GGGACACACCGCCAGTGGTGAGATTTTGTTTGGAACGGACTCTCATACTT
GCAATGCAGGCGCGTTTGGAATGTTCGCCACTGGTATCGGAAACACGGAT
GCCGGTTTCATTCTTGGTACCGGGAAACTGCTGGTGAAAGTGCCGCACAC
CATGAGATTTCAGCTTAACGGGGATATGCCGGACTATCTCTTAGCAAAGG
ATCTTATTTTGAATATCATTGGTGATATCGGTGTCGGTGGGGCCACATAT
AGGGCAATGGAGTTCGCGGGCTCCACGATTGCACAGTTCTCTATGGAAGA
GAGGATGACCTTGTGCAACATGGCTGTCGAAGCGGGCGGGAAGAACGGTC
TTATCGAACCTGACCATGTTACAGAAGCTTATTTGGCTGCACGCGGAACA
AAGCCTACCGCAATGTTCAAATCTGACCAGCAGGCAAGCTACTTCGCCGA
CTACACGTATGATGTTTCGAAGATTGAGCCCATTGTGGCCAAACCTCACT
CTCCTGATAACCGAGCATTGGCTCGCGAGTGCTCAACCGTACGCACTGAT
CGTGTATATGTTGGTTCTTGCACCGGCGGAAAGACCGAGGATTTCCTGGC
CGCTGCACGAGTACTTCAAGGGCGAAAGGTATCTGTGCCCACTTTTTTGG
TACCTGCCACGCAAAGAGTATATGATGACATTGAGAGGCTGCGTATCAAC
GGAGAGACACTCAAGGAGATCTTTCATAATGCTGGTTGCATCGGTCTTGG
AAACCCAGGGTGTGCGGCTTGTCTTGGTGGACCATCAGATACTTTCGCTC
GTTTGAATGAACCGCTTGTGTGCGTCTCAACCACCAACAGAAACTTCCCG
GGTCGTATGGGTCATAAGGAAGGCCAAATATATCTCGCTTCTCCATACAC
TGCTGCTGCCTCGGCTGTGACTGGCTATGTGACTGATCCTCGTGAAGTTT
ATGACTTTGACCTACTCAAGCGCCATCCTACCGAGAGTCTTGCTGATTAA
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