Ggra2835.t3 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2835.t3
Unique Name	Ggra2835.t3
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	685

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000123_pilon	contig	tig00000123_pilon:417194..419248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3760.EMJ26498
PFAMs	Castor_Poll_mid
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K21866
KEGG TC	1.A.1.23
Evalue	1.45e-47
EggNOG OGs	COG1226@1\|root,2QU6W@2759\|Eukaryota,37HZ3@33090\|Viridiplantae,3GAU3@35493\|Streptophyta,4JMTI@91835\|fabids
Description	Ion channel CASTOR-like
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2835	Ggra2835	Gracilaria gracilis GNS1m male	gene	tig00000123_pilon 417194..419248 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t3.start1	Ggra2835.t3.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000123_pilon 417194..417196 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t3.CDS1	Ggra2835.t3.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000123_pilon 417194..419248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t3.exon1	Ggra2835.t3.exon1	Gracilaria gracilis GNS1m male	exon	tig00000123_pilon 417194..419248 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t3.stop1	Ggra2835.t3.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000123_pilon 419246..419248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t3	Ggra2835.t3	Gracilaria gracilis GNS1m male	polypeptide	tig00000123_pilon 417194..419248 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000123_pilon:417194..419248+
coding sequence from alignment at tig00000123_pilon:417194..419248+

mRNA sequence

>Ggra2835.t3 ID=Ggra2835.t3|Name=Ggra2835.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=685bp
MELPAQVAPSVVRRNAYNNYNKSHGAIAIVSPSGAMIEKLRVNVNDRLSF
WFSEFLMWHPSARVIALLGMTLLFMYLGSFLYRLADPQKREAAHPFWHSV
RAIANPLEDDWENNYLRATSITLAAIGMVFFAILVGMVTESVESAVHAVD
GAGSSVIVKDHILVCGWDSHVSQILKDVSSLSKETPIVVLAKPEKRPVMF
SQLREALPDDELRKLRLFYRPGVPVIKDDLSRVAATRAKKIILVTERQGD
PTDADRQTLSRAMALRQNLPGFTGDIVAELRSERDERILKAILRNTQARS
VETINAEKLLYRFMAQAIRQPGLADVVGELMGDDVIRVFHVEAAQRIAPD
LVGSKLNTLKPTSIPGSILCGFVMNGTVKIGLGSELSIQPSTELLFLGGQ
RNTGTKGIEASDIEGTIIKPGGIQMAERKKEPESYLICGWRPEMRHMLKE
LDEILVRGSKLTILAEDAPMKPPRKLKNLSLKTVHNRADRYENLEELFLQ
NPKGFDHVVILSSTFGGNELKETGGTEEDAATIASLAYVNELLHNQREAQ
QIDAKTVVTVEFLNERIAQMAKEQGYVANSILPHNLSAKIAAQTVRDSRL
NTVWNQLLSQEGYEVYLRPCGAYEGVEESSKSFSQVAEDVCGYDDILLGY
IGSDGRVAMNPSESNRTAPREWNASDLLIVLSEK*

spliced messenger RNA

>Ggra2835.t3 ID=Ggra2835.t3|Name=Ggra2835.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2055bp|location=Sequence derived from alignment at tig00000123_pilon:417194..419248+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTACCTGCCCAAGTTGCTCCAAGTGTTGTGCGACGAAATGCGTA
TAACAACTATAACAAATCACATGGCGCTATCGCGATCGTATCGCCTTCAG
GGGCCATGATCGAGAAGCTTCGGGTCAATGTGAACGACCGTCTTTCGTTC
TGGTTCAGTGAATTTCTAATGTGGCACCCAAGCGCAAGAGTTATCGCCTT
GCTTGGAATGACATTGTTGTTCATGTACCTAGGCTCTTTTCTATATCGGC
TCGCTGATCCCCAAAAGAGAGAGGCTGCTCATCCTTTCTGGCATTCAGTT
CGTGCTATCGCGAACCCGTTGGAGGATGACTGGGAAAACAACTATCTCCG
AGCAACTAGTATTACTCTCGCAGCAATTGGAATGGTGTTCTTTGCAATCT
TGGTAGGAATGGTAACCGAATCTGTGGAAAGTGCTGTTCATGCCGTAGAT
GGAGCTGGTTCAAGCGTTATAGTCAAAGATCACATTTTGGTATGTGGTTG
GGACTCGCACGTTTCACAAATCTTGAAAGACGTTTCTTCCCTATCGAAAG
AAACCCCTATAGTTGTCCTCGCCAAACCAGAGAAAAGGCCAGTCATGTTT
TCCCAGTTACGTGAAGCCCTTCCTGATGATGAACTTCGGAAATTGCGTTT
GTTCTACCGACCCGGGGTCCCTGTTATAAAAGATGATTTGTCTCGGGTAG
CTGCTACTCGAGCAAAGAAGATCATTTTGGTTACAGAACGACAAGGAGAT
CCTACGGATGCAGACAGACAAACTCTCTCTAGAGCAATGGCACTACGGCA
GAATCTTCCAGGATTCACCGGTGATATTGTTGCCGAACTTCGTTCAGAAC
GAGATGAACGTATTCTAAAGGCAATTCTTCGAAATACGCAAGCTCGTTCC
GTGGAGACAATTAATGCAGAGAAGTTATTGTACCGATTTATGGCACAGGC
GATAAGGCAACCTGGACTAGCTGACGTTGTTGGTGAGTTGATGGGAGATG
ATGTGATCCGGGTTTTTCACGTCGAGGCAGCCCAAAGGATTGCCCCTGAT
CTAGTTGGCTCAAAACTCAATACCTTAAAGCCTACGTCTATTCCAGGTTC
AATTCTTTGCGGGTTTGTCATGAATGGGACTGTAAAGATCGGACTGGGCA
GTGAACTAAGCATTCAACCATCGACAGAGCTCCTGTTTTTAGGCGGTCAA
CGTAATACTGGTACAAAGGGTATAGAGGCGTCAGACATTGAAGGCACGAT
AATAAAACCCGGCGGTATACAAATGGCAGAAAGAAAGAAGGAGCCGGAGT
CCTATCTCATATGTGGATGGAGGCCTGAAATGCGTCACATGCTGAAGGAA
CTTGATGAAATTCTTGTTCGTGGCTCTAAGCTTACCATTTTGGCTGAGGA
TGCACCCATGAAACCTCCTAGGAAGCTGAAGAACCTGTCCCTCAAGACCG
TTCATAACCGTGCAGATAGATATGAGAATCTAGAAGAGCTCTTCCTCCAA
AATCCGAAGGGTTTTGATCACGTAGTGATACTGAGCTCCACTTTCGGTGG
CAATGAACTCAAAGAAACCGGAGGTACAGAAGAAGATGCGGCAACGATTG
CAAGTCTTGCGTATGTCAACGAACTCCTTCATAACCAAAGAGAAGCTCAA
CAAATTGATGCAAAAACGGTTGTTACGGTGGAATTTCTTAACGAGCGTAT
TGCGCAGATGGCGAAGGAACAAGGATACGTTGCAAATTCGATTCTCCCAC
ACAATCTGAGTGCCAAGATCGCAGCTCAAACCGTGAGAGATAGCAGATTG
AACACTGTATGGAATCAACTACTTTCTCAAGAAGGGTATGAAGTATATCT
ACGACCATGCGGCGCATATGAAGGTGTTGAAGAATCTTCGAAATCGTTTT
CACAGGTCGCTGAGGACGTTTGCGGCTATGATGACATACTACTTGGATAC
ATCGGAAGCGATGGACGTGTAGCAATGAATCCAAGTGAAAGCAACAGAAC
TGCACCTCGTGAATGGAATGCTAGTGATCTCCTTATTGTCCTTTCGGAAA
AGTAA

protein sequence of Ggra2835.t3

>Ggra2835.t3 ID=Ggra2835.t3|Name=Ggra2835.t3|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=685bp
MELPAQVAPSVVRRNAYNNYNKSHGAIAIVSPSGAMIEKLRVNVNDRLSF
WFSEFLMWHPSARVIALLGMTLLFMYLGSFLYRLADPQKREAAHPFWHSV
RAIANPLEDDWENNYLRATSITLAAIGMVFFAILVGMVTESVESAVHAVD
GAGSSVIVKDHILVCGWDSHVSQILKDVSSLSKETPIVVLAKPEKRPVMF
SQLREALPDDELRKLRLFYRPGVPVIKDDLSRVAATRAKKIILVTERQGD
PTDADRQTLSRAMALRQNLPGFTGDIVAELRSERDERILKAILRNTQARS
VETINAEKLLYRFMAQAIRQPGLADVVGELMGDDVIRVFHVEAAQRIAPD
LVGSKLNTLKPTSIPGSILCGFVMNGTVKIGLGSELSIQPSTELLFLGGQ
RNTGTKGIEASDIEGTIIKPGGIQMAERKKEPESYLICGWRPEMRHMLKE
LDEILVRGSKLTILAEDAPMKPPRKLKNLSLKTVHNRADRYENLEELFLQ
NPKGFDHVVILSSTFGGNELKETGGTEEDAATIASLAYVNELLHNQREAQ
QIDAKTVVTVEFLNERIAQMAKEQGYVANSILPHNLSAKIAAQTVRDSRL
NTVWNQLLSQEGYEVYLRPCGAYEGVEESSKSFSQVAEDVCGYDDILLGY
IGSDGRVAMNPSESNRTAPREWNASDLLIVLSEK*

mRNA from alignment at tig00000123_pilon:417194..419248+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2835.t3 ID=Ggra2835.t3|Name=Ggra2835.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2055bp|location=Sequence derived from alignment at tig00000123_pilon:417194..419248+ (Gracilaria gracilis GNS1m male)
ATGGAACTACCTGCCCAAGTTGCTCCAAGTGTTGTGCGACGAAATGCGTA
TAACAACTATAACAAATCACATGGCGCTATCGCGATCGTATCGCCTTCAG
GGGCCATGATCGAGAAGCTTCGGGTCAATGTGAACGACCGTCTTTCGTTC
TGGTTCAGTGAATTTCTAATGTGGCACCCAAGCGCAAGAGTTATCGCCTT
GCTTGGAATGACATTGTTGTTCATGTACCTAGGCTCTTTTCTATATCGGC
TCGCTGATCCCCAAAAGAGAGAGGCTGCTCATCCTTTCTGGCATTCAGTT
CGTGCTATCGCGAACCCGTTGGAGGATGACTGGGAAAACAACTATCTCCG
AGCAACTAGTATTACTCTCGCAGCAATTGGAATGGTGTTCTTTGCAATCT
TGGTAGGAATGGTAACCGAATCTGTGGAAAGTGCTGTTCATGCCGTAGAT
GGAGCTGGTTCAAGCGTTATAGTCAAAGATCACATTTTGGTATGTGGTTG
GGACTCGCACGTTTCACAAATCTTGAAAGACGTTTCTTCCCTATCGAAAG
AAACCCCTATAGTTGTCCTCGCCAAACCAGAGAAAAGGCCAGTCATGTTT
TCCCAGTTACGTGAAGCCCTTCCTGATGATGAACTTCGGAAATTGCGTTT
GTTCTACCGACCCGGGGTCCCTGTTATAAAAGATGATTTGTCTCGGGTAG
CTGCTACTCGAGCAAAGAAGATCATTTTGGTTACAGAACGACAAGGAGAT
CCTACGGATGCAGACAGACAAACTCTCTCTAGAGCAATGGCACTACGGCA
GAATCTTCCAGGATTCACCGGTGATATTGTTGCCGAACTTCGTTCAGAAC
GAGATGAACGTATTCTAAAGGCAATTCTTCGAAATACGCAAGCTCGTTCC
GTGGAGACAATTAATGCAGAGAAGTTATTGTACCGATTTATGGCACAGGC
GATAAGGCAACCTGGACTAGCTGACGTTGTTGGTGAGTTGATGGGAGATG
ATGTGATCCGGGTTTTTCACGTCGAGGCAGCCCAAAGGATTGCCCCTGAT
CTAGTTGGCTCAAAACTCAATACCTTAAAGCCTACGTCTATTCCAGGTTC
AATTCTTTGCGGGTTTGTCATGAATGGGACTGTAAAGATCGGACTGGGCA
GTGAACTAAGCATTCAACCATCGACAGAGCTCCTGTTTTTAGGCGGTCAA
CGTAATACTGGTACAAAGGGTATAGAGGCGTCAGACATTGAAGGCACGAT
AATAAAACCCGGCGGTATACAAATGGCAGAAAGAAAGAAGGAGCCGGAGT
CCTATCTCATATGTGGATGGAGGCCTGAAATGCGTCACATGCTGAAGGAA
CTTGATGAAATTCTTGTTCGTGGCTCTAAGCTTACCATTTTGGCTGAGGA
TGCACCCATGAAACCTCCTAGGAAGCTGAAGAACCTGTCCCTCAAGACCG
TTCATAACCGTGCAGATAGATATGAGAATCTAGAAGAGCTCTTCCTCCAA
AATCCGAAGGGTTTTGATCACGTAGTGATACTGAGCTCCACTTTCGGTGG
CAATGAACTCAAAGAAACCGGAGGTACAGAAGAAGATGCGGCAACGATTG
CAAGTCTTGCGTATGTCAACGAACTCCTTCATAACCAAAGAGAAGCTCAA
CAAATTGATGCAAAAACGGTTGTTACGGTGGAATTTCTTAACGAGCGTAT
TGCGCAGATGGCGAAGGAACAAGGATACGTTGCAAATTCGATTCTCCCAC
ACAATCTGAGTGCCAAGATCGCAGCTCAAACCGTGAGAGATAGCAGATTG
AACACTGTATGGAATCAACTACTTTCTCAAGAAGGGTATGAAGTATATCT
ACGACCATGCGGCGCATATGAAGGTGTTGAAGAATCTTCGAAATCGTTTT
CACAGGTCGCTGAGGACGTTTGCGGCTATGATGACATACTACTTGGATAC
ATCGGAAGCGATGGACGTGTAGCAATGAATCCAAGTGAAAGCAACAGAAC
TGCACCTCGTGAATGGAATGCTAGTGATCTCCTTATTGTCCTTTCGGAAA
AGTAA

Coding sequence (CDS) from alignment at tig00000123_pilon:417194..419248+

>Ggra2835.t3 ID=Ggra2835.t3|Name=Ggra2835.t3|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2055bp|location=Sequence derived from alignment at tig00000123_pilon:417194..419248+ (Gracilaria gracilis GNS1m male)
ATGGAACTACCTGCCCAAGTTGCTCCAAGTGTTGTGCGACGAAATGCGTA
TAACAACTATAACAAATCACATGGCGCTATCGCGATCGTATCGCCTTCAG
GGGCCATGATCGAGAAGCTTCGGGTCAATGTGAACGACCGTCTTTCGTTC
TGGTTCAGTGAATTTCTAATGTGGCACCCAAGCGCAAGAGTTATCGCCTT
GCTTGGAATGACATTGTTGTTCATGTACCTAGGCTCTTTTCTATATCGGC
TCGCTGATCCCCAAAAGAGAGAGGCTGCTCATCCTTTCTGGCATTCAGTT
CGTGCTATCGCGAACCCGTTGGAGGATGACTGGGAAAACAACTATCTCCG
AGCAACTAGTATTACTCTCGCAGCAATTGGAATGGTGTTCTTTGCAATCT
TGGTAGGAATGGTAACCGAATCTGTGGAAAGTGCTGTTCATGCCGTAGAT
GGAGCTGGTTCAAGCGTTATAGTCAAAGATCACATTTTGGTATGTGGTTG
GGACTCGCACGTTTCACAAATCTTGAAAGACGTTTCTTCCCTATCGAAAG
AAACCCCTATAGTTGTCCTCGCCAAACCAGAGAAAAGGCCAGTCATGTTT
TCCCAGTTACGTGAAGCCCTTCCTGATGATGAACTTCGGAAATTGCGTTT
GTTCTACCGACCCGGGGTCCCTGTTATAAAAGATGATTTGTCTCGGGTAG
CTGCTACTCGAGCAAAGAAGATCATTTTGGTTACAGAACGACAAGGAGAT
CCTACGGATGCAGACAGACAAACTCTCTCTAGAGCAATGGCACTACGGCA
GAATCTTCCAGGATTCACCGGTGATATTGTTGCCGAACTTCGTTCAGAAC
GAGATGAACGTATTCTAAAGGCAATTCTTCGAAATACGCAAGCTCGTTCC
GTGGAGACAATTAATGCAGAGAAGTTATTGTACCGATTTATGGCACAGGC
GATAAGGCAACCTGGACTAGCTGACGTTGTTGGTGAGTTGATGGGAGATG
ATGTGATCCGGGTTTTTCACGTCGAGGCAGCCCAAAGGATTGCCCCTGAT
CTAGTTGGCTCAAAACTCAATACCTTAAAGCCTACGTCTATTCCAGGTTC
AATTCTTTGCGGGTTTGTCATGAATGGGACTGTAAAGATCGGACTGGGCA
GTGAACTAAGCATTCAACCATCGACAGAGCTCCTGTTTTTAGGCGGTCAA
CGTAATACTGGTACAAAGGGTATAGAGGCGTCAGACATTGAAGGCACGAT
AATAAAACCCGGCGGTATACAAATGGCAGAAAGAAAGAAGGAGCCGGAGT
CCTATCTCATATGTGGATGGAGGCCTGAAATGCGTCACATGCTGAAGGAA
CTTGATGAAATTCTTGTTCGTGGCTCTAAGCTTACCATTTTGGCTGAGGA
TGCACCCATGAAACCTCCTAGGAAGCTGAAGAACCTGTCCCTCAAGACCG
TTCATAACCGTGCAGATAGATATGAGAATCTAGAAGAGCTCTTCCTCCAA
AATCCGAAGGGTTTTGATCACGTAGTGATACTGAGCTCCACTTTCGGTGG
CAATGAACTCAAAGAAACCGGAGGTACAGAAGAAGATGCGGCAACGATTG
CAAGTCTTGCGTATGTCAACGAACTCCTTCATAACCAAAGAGAAGCTCAA
CAAATTGATGCAAAAACGGTTGTTACGGTGGAATTTCTTAACGAGCGTAT
TGCGCAGATGGCGAAGGAACAAGGATACGTTGCAAATTCGATTCTCCCAC
ACAATCTGAGTGCCAAGATCGCAGCTCAAACCGTGAGAGATAGCAGATTG
AACACTGTATGGAATCAACTACTTTCTCAAGAAGGGTATGAAGTATATCT
ACGACCATGCGGCGCATATGAAGGTGTTGAAGAATCTTCGAAATCGTTTT
CACAGGTCGCTGAGGACGTTTGCGGCTATGATGACATACTACTTGGATAC
ATCGGAAGCGATGGACGTGTAGCAATGAATCCAAGTGAAAGCAACAGAAC
TGCACCTCGTGAATGGAATGCTAGTGATCTCCTTATTGTCCTTTCGGAAA
AGTAA