Ggra2835.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2835.t1
Unique Name	Ggra2835.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	549

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000123_pilon	contig	tig00000123_pilon:417602..419248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	57918.XP_004309868.1
PFAMs	Castor_Poll_mid
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K21866
KEGG TC	1.A.1.23
Evalue	1.65e-37
EggNOG OGs	COG1226@1\|root,2QU6W@2759\|Eukaryota,37HZ3@33090\|Viridiplantae,3GAU3@35493\|Streptophyta,4JMTI@91835\|fabids
Description	Ion channel CASTOR-like
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2835	Ggra2835	Gracilaria gracilis GNS1m male	gene	tig00000123_pilon 417194..419248 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t1.start1	Ggra2835.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000123_pilon 417602..417604 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t1.CDS1	Ggra2835.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000123_pilon 417602..419248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t1.exon1	Ggra2835.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000123_pilon 417602..419248 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t1.stop1	Ggra2835.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000123_pilon 419246..419248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2835.t1	Ggra2835.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000123_pilon 417602..419248 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000123_pilon:417602..419248+
coding sequence from alignment at tig00000123_pilon:417602..419248+

mRNA sequence

>Ggra2835.t1 ID=Ggra2835.t1|Name=Ggra2835.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp
MVTESVESAVHAVDGAGSSVIVKDHILVCGWDSHVSQILKDVSSLSKETP
IVVLAKPEKRPVMFSQLREALPDDELRKLRLFYRPGVPVIKDDLSRVAAT
RAKKIILVTERQGDPTDADRQTLSRAMALRQNLPGFTGDIVAELRSERDE
RILKAILRNTQARSVETINAEKLLYRFMAQAIRQPGLADVVGELMGDDVI
RVFHVEAAQRIAPDLVGSKLNTLKPTSIPGSILCGFVMNGTVKIGLGSEL
SIQPSTELLFLGGQRNTGTKGIEASDIEGTIIKPGGIQMAERKKEPESYL
ICGWRPEMRHMLKELDEILVRGSKLTILAEDAPMKPPRKLKNLSLKTVHN
RADRYENLEELFLQNPKGFDHVVILSSTFGGNELKETGGTEEDAATIASL
AYVNELLHNQREAQQIDAKTVVTVEFLNERIAQMAKEQGYVANSILPHNL
SAKIAAQTVRDSRLNTVWNQLLSQEGYEVYLRPCGAYEGVEESSKSFSQV
AEDVCGYDDILLGYIGSDGRVAMNPSESNRTAPREWNASDLLIVLSEK*

spliced messenger RNA

>Ggra2835.t1 ID=Ggra2835.t1|Name=Ggra2835.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000123_pilon:417602..419248+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAACCGAATCTGTGGAAAGTGCTGTTCATGCCGTAGATGGAGCTGG
TTCAAGCGTTATAGTCAAAGATCACATTTTGGTATGTGGTTGGGACTCGC
ACGTTTCACAAATCTTGAAAGACGTTTCTTCCCTATCGAAAGAAACCCCT
ATAGTTGTCCTCGCCAAACCAGAGAAAAGGCCAGTCATGTTTTCCCAGTT
ACGTGAAGCCCTTCCTGATGATGAACTTCGGAAATTGCGTTTGTTCTACC
GACCCGGGGTCCCTGTTATAAAAGATGATTTGTCTCGGGTAGCTGCTACT
CGAGCAAAGAAGATCATTTTGGTTACAGAACGACAAGGAGATCCTACGGA
TGCAGACAGACAAACTCTCTCTAGAGCAATGGCACTACGGCAGAATCTTC
CAGGATTCACCGGTGATATTGTTGCCGAACTTCGTTCAGAACGAGATGAA
CGTATTCTAAAGGCAATTCTTCGAAATACGCAAGCTCGTTCCGTGGAGAC
AATTAATGCAGAGAAGTTATTGTACCGATTTATGGCACAGGCGATAAGGC
AACCTGGACTAGCTGACGTTGTTGGTGAGTTGATGGGAGATGATGTGATC
CGGGTTTTTCACGTCGAGGCAGCCCAAAGGATTGCCCCTGATCTAGTTGG
CTCAAAACTCAATACCTTAAAGCCTACGTCTATTCCAGGTTCAATTCTTT
GCGGGTTTGTCATGAATGGGACTGTAAAGATCGGACTGGGCAGTGAACTA
AGCATTCAACCATCGACAGAGCTCCTGTTTTTAGGCGGTCAACGTAATAC
TGGTACAAAGGGTATAGAGGCGTCAGACATTGAAGGCACGATAATAAAAC
CCGGCGGTATACAAATGGCAGAAAGAAAGAAGGAGCCGGAGTCCTATCTC
ATATGTGGATGGAGGCCTGAAATGCGTCACATGCTGAAGGAACTTGATGA
AATTCTTGTTCGTGGCTCTAAGCTTACCATTTTGGCTGAGGATGCACCCA
TGAAACCTCCTAGGAAGCTGAAGAACCTGTCCCTCAAGACCGTTCATAAC
CGTGCAGATAGATATGAGAATCTAGAAGAGCTCTTCCTCCAAAATCCGAA
GGGTTTTGATCACGTAGTGATACTGAGCTCCACTTTCGGTGGCAATGAAC
TCAAAGAAACCGGAGGTACAGAAGAAGATGCGGCAACGATTGCAAGTCTT
GCGTATGTCAACGAACTCCTTCATAACCAAAGAGAAGCTCAACAAATTGA
TGCAAAAACGGTTGTTACGGTGGAATTTCTTAACGAGCGTATTGCGCAGA
TGGCGAAGGAACAAGGATACGTTGCAAATTCGATTCTCCCACACAATCTG
AGTGCCAAGATCGCAGCTCAAACCGTGAGAGATAGCAGATTGAACACTGT
ATGGAATCAACTACTTTCTCAAGAAGGGTATGAAGTATATCTACGACCAT
GCGGCGCATATGAAGGTGTTGAAGAATCTTCGAAATCGTTTTCACAGGTC
GCTGAGGACGTTTGCGGCTATGATGACATACTACTTGGATACATCGGAAG
CGATGGACGTGTAGCAATGAATCCAAGTGAAAGCAACAGAACTGCACCTC
GTGAATGGAATGCTAGTGATCTCCTTATTGTCCTTTCGGAAAAGTAA

protein sequence of Ggra2835.t1

>Ggra2835.t1 ID=Ggra2835.t1|Name=Ggra2835.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=549bp
MVTESVESAVHAVDGAGSSVIVKDHILVCGWDSHVSQILKDVSSLSKETP
IVVLAKPEKRPVMFSQLREALPDDELRKLRLFYRPGVPVIKDDLSRVAAT
RAKKIILVTERQGDPTDADRQTLSRAMALRQNLPGFTGDIVAELRSERDE
RILKAILRNTQARSVETINAEKLLYRFMAQAIRQPGLADVVGELMGDDVI
RVFHVEAAQRIAPDLVGSKLNTLKPTSIPGSILCGFVMNGTVKIGLGSEL
SIQPSTELLFLGGQRNTGTKGIEASDIEGTIIKPGGIQMAERKKEPESYL
ICGWRPEMRHMLKELDEILVRGSKLTILAEDAPMKPPRKLKNLSLKTVHN
RADRYENLEELFLQNPKGFDHVVILSSTFGGNELKETGGTEEDAATIASL
AYVNELLHNQREAQQIDAKTVVTVEFLNERIAQMAKEQGYVANSILPHNL
SAKIAAQTVRDSRLNTVWNQLLSQEGYEVYLRPCGAYEGVEESSKSFSQV
AEDVCGYDDILLGYIGSDGRVAMNPSESNRTAPREWNASDLLIVLSEK*

mRNA from alignment at tig00000123_pilon:417602..419248+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2835.t1 ID=Ggra2835.t1|Name=Ggra2835.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000123_pilon:417602..419248+ (Gracilaria gracilis GNS1m male)
ATGGTAACCGAATCTGTGGAAAGTGCTGTTCATGCCGTAGATGGAGCTGG
TTCAAGCGTTATAGTCAAAGATCACATTTTGGTATGTGGTTGGGACTCGC
ACGTTTCACAAATCTTGAAAGACGTTTCTTCCCTATCGAAAGAAACCCCT
ATAGTTGTCCTCGCCAAACCAGAGAAAAGGCCAGTCATGTTTTCCCAGTT
ACGTGAAGCCCTTCCTGATGATGAACTTCGGAAATTGCGTTTGTTCTACC
GACCCGGGGTCCCTGTTATAAAAGATGATTTGTCTCGGGTAGCTGCTACT
CGAGCAAAGAAGATCATTTTGGTTACAGAACGACAAGGAGATCCTACGGA
TGCAGACAGACAAACTCTCTCTAGAGCAATGGCACTACGGCAGAATCTTC
CAGGATTCACCGGTGATATTGTTGCCGAACTTCGTTCAGAACGAGATGAA
CGTATTCTAAAGGCAATTCTTCGAAATACGCAAGCTCGTTCCGTGGAGAC
AATTAATGCAGAGAAGTTATTGTACCGATTTATGGCACAGGCGATAAGGC
AACCTGGACTAGCTGACGTTGTTGGTGAGTTGATGGGAGATGATGTGATC
CGGGTTTTTCACGTCGAGGCAGCCCAAAGGATTGCCCCTGATCTAGTTGG
CTCAAAACTCAATACCTTAAAGCCTACGTCTATTCCAGGTTCAATTCTTT
GCGGGTTTGTCATGAATGGGACTGTAAAGATCGGACTGGGCAGTGAACTA
AGCATTCAACCATCGACAGAGCTCCTGTTTTTAGGCGGTCAACGTAATAC
TGGTACAAAGGGTATAGAGGCGTCAGACATTGAAGGCACGATAATAAAAC
CCGGCGGTATACAAATGGCAGAAAGAAAGAAGGAGCCGGAGTCCTATCTC
ATATGTGGATGGAGGCCTGAAATGCGTCACATGCTGAAGGAACTTGATGA
AATTCTTGTTCGTGGCTCTAAGCTTACCATTTTGGCTGAGGATGCACCCA
TGAAACCTCCTAGGAAGCTGAAGAACCTGTCCCTCAAGACCGTTCATAAC
CGTGCAGATAGATATGAGAATCTAGAAGAGCTCTTCCTCCAAAATCCGAA
GGGTTTTGATCACGTAGTGATACTGAGCTCCACTTTCGGTGGCAATGAAC
TCAAAGAAACCGGAGGTACAGAAGAAGATGCGGCAACGATTGCAAGTCTT
GCGTATGTCAACGAACTCCTTCATAACCAAAGAGAAGCTCAACAAATTGA
TGCAAAAACGGTTGTTACGGTGGAATTTCTTAACGAGCGTATTGCGCAGA
TGGCGAAGGAACAAGGATACGTTGCAAATTCGATTCTCCCACACAATCTG
AGTGCCAAGATCGCAGCTCAAACCGTGAGAGATAGCAGATTGAACACTGT
ATGGAATCAACTACTTTCTCAAGAAGGGTATGAAGTATATCTACGACCAT
GCGGCGCATATGAAGGTGTTGAAGAATCTTCGAAATCGTTTTCACAGGTC
GCTGAGGACGTTTGCGGCTATGATGACATACTACTTGGATACATCGGAAG
CGATGGACGTGTAGCAATGAATCCAAGTGAAAGCAACAGAACTGCACCTC
GTGAATGGAATGCTAGTGATCTCCTTATTGTCCTTTCGGAAAAGTAA

Coding sequence (CDS) from alignment at tig00000123_pilon:417602..419248+

>Ggra2835.t1 ID=Ggra2835.t1|Name=Ggra2835.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00000123_pilon:417602..419248+ (Gracilaria gracilis GNS1m male)
ATGGTAACCGAATCTGTGGAAAGTGCTGTTCATGCCGTAGATGGAGCTGG
TTCAAGCGTTATAGTCAAAGATCACATTTTGGTATGTGGTTGGGACTCGC
ACGTTTCACAAATCTTGAAAGACGTTTCTTCCCTATCGAAAGAAACCCCT
ATAGTTGTCCTCGCCAAACCAGAGAAAAGGCCAGTCATGTTTTCCCAGTT
ACGTGAAGCCCTTCCTGATGATGAACTTCGGAAATTGCGTTTGTTCTACC
GACCCGGGGTCCCTGTTATAAAAGATGATTTGTCTCGGGTAGCTGCTACT
CGAGCAAAGAAGATCATTTTGGTTACAGAACGACAAGGAGATCCTACGGA
TGCAGACAGACAAACTCTCTCTAGAGCAATGGCACTACGGCAGAATCTTC
CAGGATTCACCGGTGATATTGTTGCCGAACTTCGTTCAGAACGAGATGAA
CGTATTCTAAAGGCAATTCTTCGAAATACGCAAGCTCGTTCCGTGGAGAC
AATTAATGCAGAGAAGTTATTGTACCGATTTATGGCACAGGCGATAAGGC
AACCTGGACTAGCTGACGTTGTTGGTGAGTTGATGGGAGATGATGTGATC
CGGGTTTTTCACGTCGAGGCAGCCCAAAGGATTGCCCCTGATCTAGTTGG
CTCAAAACTCAATACCTTAAAGCCTACGTCTATTCCAGGTTCAATTCTTT
GCGGGTTTGTCATGAATGGGACTGTAAAGATCGGACTGGGCAGTGAACTA
AGCATTCAACCATCGACAGAGCTCCTGTTTTTAGGCGGTCAACGTAATAC
TGGTACAAAGGGTATAGAGGCGTCAGACATTGAAGGCACGATAATAAAAC
CCGGCGGTATACAAATGGCAGAAAGAAAGAAGGAGCCGGAGTCCTATCTC
ATATGTGGATGGAGGCCTGAAATGCGTCACATGCTGAAGGAACTTGATGA
AATTCTTGTTCGTGGCTCTAAGCTTACCATTTTGGCTGAGGATGCACCCA
TGAAACCTCCTAGGAAGCTGAAGAACCTGTCCCTCAAGACCGTTCATAAC
CGTGCAGATAGATATGAGAATCTAGAAGAGCTCTTCCTCCAAAATCCGAA
GGGTTTTGATCACGTAGTGATACTGAGCTCCACTTTCGGTGGCAATGAAC
TCAAAGAAACCGGAGGTACAGAAGAAGATGCGGCAACGATTGCAAGTCTT
GCGTATGTCAACGAACTCCTTCATAACCAAAGAGAAGCTCAACAAATTGA
TGCAAAAACGGTTGTTACGGTGGAATTTCTTAACGAGCGTATTGCGCAGA
TGGCGAAGGAACAAGGATACGTTGCAAATTCGATTCTCCCACACAATCTG
AGTGCCAAGATCGCAGCTCAAACCGTGAGAGATAGCAGATTGAACACTGT
ATGGAATCAACTACTTTCTCAAGAAGGGTATGAAGTATATCTACGACCAT
GCGGCGCATATGAAGGTGTTGAAGAATCTTCGAAATCGTTTTCACAGGTC
GCTGAGGACGTTTGCGGCTATGATGACATACTACTTGGATACATCGGAAG
CGATGGACGTGTAGCAATGAATCCAAGTGAAAGCAACAGAACTGCACCTC
GTGAATGGAATGCTAGTGATCTCCTTATTGTCCTTTCGGAAAAGTAA