Ggra2827.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2827.t1
Unique NameGgra2827.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:394384..395383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3885.XP_007148210.1
PFAMsCLTH,LisH
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Evalue1.14e-95
EggNOG OGsKOG2659@1|root,KOG2659@2759|Eukaryota,37J2U@33090|Viridiplantae,3GG26@35493|Streptophyta,4JSM6@91835|fabids
DescriptionGlucose-induced degradation protein 8 homolog
COG categoryZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2827Ggra2827Gracilaria gracilis GNS1m malegenetig00000123_pilon 394384..395383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2827.t1Ggra2827.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 394384..395383 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2827.t1.stop1Ggra2827.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 394384..394386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2827.t1.CDS1Ggra2827.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 394384..394993 -
Ggra2827.t1.CDS2Ggra2827.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000123_pilon 395101..395228 -
Ggra2827.t1.CDS3Ggra2827.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000123_pilon 395381..395383 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2827.t1.exon1Ggra2827.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 394384..394993 -
Ggra2827.t1.exon2Ggra2827.t1.exon2Gracilaria gracilis GNS1m maleexontig00000123_pilon 395101..395228 -
Ggra2827.t1.exon3Ggra2827.t1.exon3Gracilaria gracilis GNS1m maleexontig00000123_pilon 395381..395383 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2827.t1.intron1Ggra2827.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000123_pilon 394994..395100 -
Ggra2827.t1.intron2Ggra2827.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000123_pilon 395229..395380 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2827.t1.start1Ggra2827.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 395381..395383 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2827.t1 ID=Ggra2827.t1|Name=Ggra2827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MQQISLSLIARIQQRVKMSSEEKKTVFTNDFWEAELADMPVNKSEMNKLI
MNYLVIEGYKEAAEKFEEECGTPPGIDLPSISDRMATRVAIQRGDVQSAI
ERANDLNPLILDENPQLFFHLQQQKLIELIRNGDIEAALEFAEKELAPRG
EENPQFLTELERTMALLAFEDKSKCPVADLLEPAQRQKTASELNAAILTS
QCQEKDPKLPSLLKMLLWAQDQLKDKAEFPVMDIETAILHSSQGSS*
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spliced messenger RNA

>Ggra2827.t1 ID=Ggra2827.t1|Name=Ggra2827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000123_pilon:394384..395383- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACAAATTTCACTATCACTTATTGCCAGAATACAGCAACGCGTGAA
GATGAGCAGTGAAGAGAAGAAAACTGTCTTCACCAACGATTTCTGGGAAG
CAGAGCTGGCAGATATGCCTGTCAACAAGAGCGAAATGAATAAGCTCATA
ATGAACTATCTCGTCATCGAAGGGTACAAAGAGGCAGCGGAAAAGTTTGA
AGAGGAATGTGGCACTCCTCCCGGAATAGACCTTCCAAGCATTTCCGACC
GCATGGCTACTCGCGTCGCTATTCAGCGCGGTGACGTCCAGAGCGCCATA
GAGCGCGCCAACGACCTCAATCCTTTAATTCTTGACGAGAACCCACAACT
ATTCTTTCACTTGCAACAGCAAAAGCTCATAGAACTTATCAGAAACGGCG
ACATAGAAGCAGCCTTGGAGTTTGCTGAAAAAGAGCTGGCCCCTCGCGGC
GAGGAAAATCCTCAATTTCTTACCGAACTCGAAAGAACTATGGCCTTGCT
AGCGTTTGAGGACAAATCCAAATGTCCCGTGGCGGACCTTTTAGAGCCTG
CTCAGCGGCAAAAGACTGCAAGCGAACTTAATGCAGCCATCTTGACCAGC
CAATGCCAAGAGAAAGACCCAAAGCTGCCATCACTGCTGAAGATGTTACT
GTGGGCTCAAGATCAATTGAAGGATAAGGCCGAGTTTCCCGTAATGGATA
TTGAGACAGCGATCCTCCACTCTTCACAAGGGTCCTCGTAA
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protein sequence of Ggra2827.t1

>Ggra2827.t1 ID=Ggra2827.t1|Name=Ggra2827.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MQQISLSLIARIQQRVKMSSEEKKTVFTNDFWEAELADMPVNKSEMNKLI
MNYLVIEGYKEAAEKFEEECGTPPGIDLPSISDRMATRVAIQRGDVQSAI
ERANDLNPLILDENPQLFFHLQQQKLIELIRNGDIEAALEFAEKELAPRG
EENPQFLTELERTMALLAFEDKSKCPVADLLEPAQRQKTASELNAAILTS
QCQEKDPKLPSLLKMLLWAQDQLKDKAEFPVMDIETAILHSSQGSS*
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mRNA from alignment at tig00000123_pilon:394384..395383-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2827.t1 ID=Ggra2827.t1|Name=Ggra2827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1000bp|location=Sequence derived from alignment at tig00000123_pilon:394384..395383- (Gracilaria gracilis GNS1m male)
ATGGTACGAATTCCTGCGAAGCAAATTTACTTGAACAAATAGCGATACCC
CCTCAGTGACGCTCTTTGCAGCTCTAACATCGAACTATTAATGTGTATGC
CACCACTCCTTTGCACCGCTGCGGAAATCAACTCAATCCATTCACTCAAA
CGAAGCAACAAATTTCACTATCACTTATTGCCAGAATACAGCAACGCGTG
AAGATGAGCAGTGAAGAGAAGAAAACTGTCTTCACCAACGATTTCTGGGA
AGCAGAGCTGGCAGATATGCCTGTCAACAAGAGGTAAGCGAAACAGTCGC
GTTTCGAAAAGGTCCGCCGTCCTACAAACTCCGCTCCGTCTTATTTCTGA
CATATTGAACGAACCGCATTGTCTTCGAAATGCTCCGCAGCGAAATGAAT
AAGCTCATAATGAACTATCTCGTCATCGAAGGGTACAAAGAGGCAGCGGA
AAAGTTTGAAGAGGAATGTGGCACTCCTCCCGGAATAGACCTTCCAAGCA
TTTCCGACCGCATGGCTACTCGCGTCGCTATTCAGCGCGGTGACGTCCAG
AGCGCCATAGAGCGCGCCAACGACCTCAATCCTTTAATTCTTGACGAGAA
CCCACAACTATTCTTTCACTTGCAACAGCAAAAGCTCATAGAACTTATCA
GAAACGGCGACATAGAAGCAGCCTTGGAGTTTGCTGAAAAAGAGCTGGCC
CCTCGCGGCGAGGAAAATCCTCAATTTCTTACCGAACTCGAAAGAACTAT
GGCCTTGCTAGCGTTTGAGGACAAATCCAAATGTCCCGTGGCGGACCTTT
TAGAGCCTGCTCAGCGGCAAAAGACTGCAAGCGAACTTAATGCAGCCATC
TTGACCAGCCAATGCCAAGAGAAAGACCCAAAGCTGCCATCACTGCTGAA
GATGTTACTGTGGGCTCAAGATCAATTGAAGGATAAGGCCGAGTTTCCCG
TAATGGATATTGAGACAGCGATCCTCCACTCTTCACAAGGGTCCTCGTAA
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Coding sequence (CDS) from alignment at tig00000123_pilon:394384..395383-

>Ggra2827.t1 ID=Ggra2827.t1|Name=Ggra2827.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000123_pilon:394384..395383- (Gracilaria gracilis GNS1m male)
ATGCAACAAATTTCACTATCACTTATTGCCAGAATACAGCAACGCGTGAA
GATGAGCAGTGAAGAGAAGAAAACTGTCTTCACCAACGATTTCTGGGAAG
CAGAGCTGGCAGATATGCCTGTCAACAAGAGCGAAATGAATAAGCTCATA
ATGAACTATCTCGTCATCGAAGGGTACAAAGAGGCAGCGGAAAAGTTTGA
AGAGGAATGTGGCACTCCTCCCGGAATAGACCTTCCAAGCATTTCCGACC
GCATGGCTACTCGCGTCGCTATTCAGCGCGGTGACGTCCAGAGCGCCATA
GAGCGCGCCAACGACCTCAATCCTTTAATTCTTGACGAGAACCCACAACT
ATTCTTTCACTTGCAACAGCAAAAGCTCATAGAACTTATCAGAAACGGCG
ACATAGAAGCAGCCTTGGAGTTTGCTGAAAAAGAGCTGGCCCCTCGCGGC
GAGGAAAATCCTCAATTTCTTACCGAACTCGAAAGAACTATGGCCTTGCT
AGCGTTTGAGGACAAATCCAAATGTCCCGTGGCGGACCTTTTAGAGCCTG
CTCAGCGGCAAAAGACTGCAAGCGAACTTAATGCAGCCATCTTGACCAGC
CAATGCCAAGAGAAAGACCCAAAGCTGCCATCACTGCTGAAGATGTTACT
GTGGGCTCAAGATCAATTGAAGGATAAGGCCGAGTTTCCCGTAATGGATA
TTGAGACAGCGATCCTCCACTCTTCACAAGGGTCCTCGTAA
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