Ggra2826.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2826.t1
Unique Name	Ggra2826.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	403

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000123_pilon	contig	tig00000123_pilon:392869..394077 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX49946
Max annot lvl	2759\|Eukaryota
Evalue	3.38e-86
EggNOG OGs	2AUPK@1\|root,2RZUJ@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2826	Ggra2826	Gracilaria gracilis GNS1m male	gene	tig00000123_pilon 392869..394077 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2826.t1.start1	Ggra2826.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000123_pilon 392869..392871 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2826.t1.CDS1	Ggra2826.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000123_pilon 392869..394077 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2826.t1.exon1	Ggra2826.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000123_pilon 392869..394077 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2826.t1.stop1	Ggra2826.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000123_pilon 394075..394077 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2826.t1	Ggra2826.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000123_pilon 392869..394077 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000123_pilon:392869..394077+
coding sequence from alignment at tig00000123_pilon:392869..394077+

mRNA sequence

>Ggra2826.t1 ID=Ggra2826.t1|Name=Ggra2826.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=403bp
MPEGYGQKSVDSNDHEILLAEMRYSDPSRLPAIVQNNLDQLNEEFYRFLD
DKINASADLEERDTLRILQNAITEVMKKIFESLPPDEANAAMQESEKDSV
DVSTSEDIAAATYDELINRILQVRDTKDPSSLKTSVQVFYSQIDFRLLQR
LNERISSQGPDLEALTNLREAINEIMSDRIGEARECVKAVLSVGSMTEMK
KEIGALARKGKIDDAFILLLQANVDQAKKAGAMDAVSVLRLALDHARTVK
DIQLDPEIRLIRALLRTDDAEARARMLMESFESRGSVTLVDGTATSGVAV
DGKKFVIALRKLIGEFGNVDEKFVLKLSEIGEESEAVARKLYDMEDKDVQ
DLQEEAFHKRTVSIWDLEKYEVEEEIQGRKAAWEGRLGEIPEGFGDDGKM
QV*

spliced messenger RNA

>Ggra2826.t1 ID=Ggra2826.t1|Name=Ggra2826.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000123_pilon:392869..394077+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGAAGGATATGGACAGAAGAGTGTCGACAGCAATGACCATGAAAT
CCTCCTCGCAGAGATGCGCTATTCAGATCCTTCTCGGCTGCCAGCCATCG
TGCAGAACAATCTGGATCAACTCAACGAGGAGTTTTACCGGTTTCTAGAT
GACAAGATTAACGCTTCTGCAGATTTGGAAGAACGAGACACGCTTCGAAT
CTTGCAGAATGCCATCACAGAAGTCATGAAGAAGATTTTTGAATCGCTTC
CGCCGGATGAAGCGAACGCTGCAATGCAGGAATCAGAAAAGGATTCCGTA
GATGTCAGCACAAGTGAAGATATCGCGGCCGCTACATATGACGAGCTGAT
AAACCGAATCCTCCAAGTAAGGGATACGAAAGATCCTTCTTCATTGAAGA
CTTCTGTCCAAGTTTTCTATTCCCAAATCGACTTTCGCCTCTTGCAAAGA
TTGAATGAACGCATCTCATCACAAGGTCCTGATCTGGAAGCGCTCACAAA
CTTGCGCGAGGCTATAAATGAGATCATGAGCGACCGTATTGGAGAGGCTC
GTGAGTGTGTCAAAGCCGTGCTTTCCGTGGGTAGCATGACAGAAATGAAG
AAAGAAATAGGTGCACTTGCGCGAAAAGGAAAAATCGATGATGCTTTCAT
TCTTTTGTTACAAGCGAATGTTGACCAGGCGAAGAAAGCCGGCGCTATGG
ACGCAGTGAGTGTTTTACGTCTTGCACTCGATCATGCACGAACGGTCAAG
GATATTCAGCTGGATCCGGAAATTCGATTGATTCGCGCCTTGTTGCGCAC
AGATGATGCTGAGGCAAGAGCGAGAATGCTGATGGAAAGCTTTGAGTCTC
GAGGTTCCGTCACACTCGTCGATGGGACAGCTACTTCTGGAGTCGCCGTT
GATGGCAAGAAATTCGTTATTGCTCTAAGGAAACTCATAGGGGAATTCGG
CAATGTAGACGAAAAATTTGTTCTCAAGTTGTCAGAAATTGGAGAAGAAT
CGGAAGCTGTCGCACGGAAACTGTATGACATGGAGGATAAAGATGTTCAA
GACTTGCAAGAAGAAGCGTTCCATAAGAGAACTGTGTCTATATGGGATTT
AGAAAAGTACGAAGTTGAAGAGGAGATTCAAGGACGGAAGGCCGCCTGGG
AGGGGAGATTAGGTGAAATACCAGAAGGCTTCGGTGACGATGGGAAAATG
CAGGTCTAG

protein sequence of Ggra2826.t1

>Ggra2826.t1 ID=Ggra2826.t1|Name=Ggra2826.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=403bp
MPEGYGQKSVDSNDHEILLAEMRYSDPSRLPAIVQNNLDQLNEEFYRFLD
DKINASADLEERDTLRILQNAITEVMKKIFESLPPDEANAAMQESEKDSV
DVSTSEDIAAATYDELINRILQVRDTKDPSSLKTSVQVFYSQIDFRLLQR
LNERISSQGPDLEALTNLREAINEIMSDRIGEARECVKAVLSVGSMTEMK
KEIGALARKGKIDDAFILLLQANVDQAKKAGAMDAVSVLRLALDHARTVK
DIQLDPEIRLIRALLRTDDAEARARMLMESFESRGSVTLVDGTATSGVAV
DGKKFVIALRKLIGEFGNVDEKFVLKLSEIGEESEAVARKLYDMEDKDVQ
DLQEEAFHKRTVSIWDLEKYEVEEEIQGRKAAWEGRLGEIPEGFGDDGKM
QV*

mRNA from alignment at tig00000123_pilon:392869..394077+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2826.t1 ID=Ggra2826.t1|Name=Ggra2826.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000123_pilon:392869..394077+ (Gracilaria gracilis GNS1m male)
ATGCCTGAAGGATATGGACAGAAGAGTGTCGACAGCAATGACCATGAAAT
CCTCCTCGCAGAGATGCGCTATTCAGATCCTTCTCGGCTGCCAGCCATCG
TGCAGAACAATCTGGATCAACTCAACGAGGAGTTTTACCGGTTTCTAGAT
GACAAGATTAACGCTTCTGCAGATTTGGAAGAACGAGACACGCTTCGAAT
CTTGCAGAATGCCATCACAGAAGTCATGAAGAAGATTTTTGAATCGCTTC
CGCCGGATGAAGCGAACGCTGCAATGCAGGAATCAGAAAAGGATTCCGTA
GATGTCAGCACAAGTGAAGATATCGCGGCCGCTACATATGACGAGCTGAT
AAACCGAATCCTCCAAGTAAGGGATACGAAAGATCCTTCTTCATTGAAGA
CTTCTGTCCAAGTTTTCTATTCCCAAATCGACTTTCGCCTCTTGCAAAGA
TTGAATGAACGCATCTCATCACAAGGTCCTGATCTGGAAGCGCTCACAAA
CTTGCGCGAGGCTATAAATGAGATCATGAGCGACCGTATTGGAGAGGCTC
GTGAGTGTGTCAAAGCCGTGCTTTCCGTGGGTAGCATGACAGAAATGAAG
AAAGAAATAGGTGCACTTGCGCGAAAAGGAAAAATCGATGATGCTTTCAT
TCTTTTGTTACAAGCGAATGTTGACCAGGCGAAGAAAGCCGGCGCTATGG
ACGCAGTGAGTGTTTTACGTCTTGCACTCGATCATGCACGAACGGTCAAG
GATATTCAGCTGGATCCGGAAATTCGATTGATTCGCGCCTTGTTGCGCAC
AGATGATGCTGAGGCAAGAGCGAGAATGCTGATGGAAAGCTTTGAGTCTC
GAGGTTCCGTCACACTCGTCGATGGGACAGCTACTTCTGGAGTCGCCGTT
GATGGCAAGAAATTCGTTATTGCTCTAAGGAAACTCATAGGGGAATTCGG
CAATGTAGACGAAAAATTTGTTCTCAAGTTGTCAGAAATTGGAGAAGAAT
CGGAAGCTGTCGCACGGAAACTGTATGACATGGAGGATAAAGATGTTCAA
GACTTGCAAGAAGAAGCGTTCCATAAGAGAACTGTGTCTATATGGGATTT
AGAAAAGTACGAAGTTGAAGAGGAGATTCAAGGACGGAAGGCCGCCTGGG
AGGGGAGATTAGGTGAAATACCAGAAGGCTTCGGTGACGATGGGAAAATG
CAGGTCTAG

Coding sequence (CDS) from alignment at tig00000123_pilon:392869..394077+

>Ggra2826.t1 ID=Ggra2826.t1|Name=Ggra2826.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00000123_pilon:392869..394077+ (Gracilaria gracilis GNS1m male)
ATGCCTGAAGGATATGGACAGAAGAGTGTCGACAGCAATGACCATGAAAT
CCTCCTCGCAGAGATGCGCTATTCAGATCCTTCTCGGCTGCCAGCCATCG
TGCAGAACAATCTGGATCAACTCAACGAGGAGTTTTACCGGTTTCTAGAT
GACAAGATTAACGCTTCTGCAGATTTGGAAGAACGAGACACGCTTCGAAT
CTTGCAGAATGCCATCACAGAAGTCATGAAGAAGATTTTTGAATCGCTTC
CGCCGGATGAAGCGAACGCTGCAATGCAGGAATCAGAAAAGGATTCCGTA
GATGTCAGCACAAGTGAAGATATCGCGGCCGCTACATATGACGAGCTGAT
AAACCGAATCCTCCAAGTAAGGGATACGAAAGATCCTTCTTCATTGAAGA
CTTCTGTCCAAGTTTTCTATTCCCAAATCGACTTTCGCCTCTTGCAAAGA
TTGAATGAACGCATCTCATCACAAGGTCCTGATCTGGAAGCGCTCACAAA
CTTGCGCGAGGCTATAAATGAGATCATGAGCGACCGTATTGGAGAGGCTC
GTGAGTGTGTCAAAGCCGTGCTTTCCGTGGGTAGCATGACAGAAATGAAG
AAAGAAATAGGTGCACTTGCGCGAAAAGGAAAAATCGATGATGCTTTCAT
TCTTTTGTTACAAGCGAATGTTGACCAGGCGAAGAAAGCCGGCGCTATGG
ACGCAGTGAGTGTTTTACGTCTTGCACTCGATCATGCACGAACGGTCAAG
GATATTCAGCTGGATCCGGAAATTCGATTGATTCGCGCCTTGTTGCGCAC
AGATGATGCTGAGGCAAGAGCGAGAATGCTGATGGAAAGCTTTGAGTCTC
GAGGTTCCGTCACACTCGTCGATGGGACAGCTACTTCTGGAGTCGCCGTT
GATGGCAAGAAATTCGTTATTGCTCTAAGGAAACTCATAGGGGAATTCGG
CAATGTAGACGAAAAATTTGTTCTCAAGTTGTCAGAAATTGGAGAAGAAT
CGGAAGCTGTCGCACGGAAACTGTATGACATGGAGGATAAAGATGTTCAA
GACTTGCAAGAAGAAGCGTTCCATAAGAGAACTGTGTCTATATGGGATTT
AGAAAAGTACGAAGTTGAAGAGGAGATTCAAGGACGGAAGGCCGCCTGGG
AGGGGAGATTAGGTGAAATACCAGAAGGCTTCGGTGACGATGGGAAAATG
CAGGTCTAG