Ggra2822.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2822.t1
Unique NameGgra2822.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:382774..383922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31033.ENSTRUP00000007338
Preferred nameFANCL
PFAMsFANCL_C,WD-3
Max annot lvl33208|Metazoa
KEGG koko:K10606
KEGG Pathwayko03460,ko04120,map03460,map04120
KEGG ModuleM00413
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007276,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016567,GO:0016604,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019953,GO:0022414,GO:0031625,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0036297,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043240,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564
Evalue4.35e-85
EggNOG OGsKOG3268@1|root,KOG3268@2759|Eukaryota,38SWP@33154|Opisthokonta,3BHKX@33208|Metazoa,3CZA1@33213|Bilateria,47ZU0@7711|Chordata,495KW@7742|Vertebrata,49TB8@7898|Actinopterygii
EC2.3.2.27
DescriptionFanconi anemia, complementation group L
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2822Ggra2822Gracilaria gracilis GNS1m malegenetig00000123_pilon 382774..383922 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2822.t1.stop1Ggra2822.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 382774..382776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2822.t1.CDS1Ggra2822.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 382774..383922 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2822.t1.exon1Ggra2822.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 382774..383922 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2822.t1.start1Ggra2822.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 383920..383922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2822.t1Ggra2822.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 382774..383922 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2822.t1 ID=Ggra2822.t1|Name=Ggra2822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=383bp
MLMAASVQALQRLIADFPAIVPQDSSLSSFAGFLSVRQRHFRVTIAADCS
QFSTDAQLSTLLAPHKQLLISRLNTSAHPHDFLVELRDLVERALASSSDN
PLSDHVELPPAFYYERLLAEIDSLGWHRVESIDKTMQSLQLNISDAASRK
HTISVILPVHFPSQPPTCKANLPLHFEPNLSDQYVLNDILSQYEQIIHKF
QPFFRVMDDFDNNSCVLEPERPSRQDCYRRICITKHCSIRVEIDPRAPIT
GFPECRFLGSENAVAPYKQRLNQNIHQWDMSGNTLPRENLETVLEFSFPS
RESLLQDSDDVLLDECGICYSYRLDDRVPDIACDLKECSKPYHRQCLLDW
LRALPDTRESFGTVSGNCVYCEHPIAVSIQSV*
back to top

spliced messenger RNA

>Ggra2822.t1 ID=Ggra2822.t1|Name=Ggra2822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000123_pilon:382774..383922- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGATGGCAGCCAGCGTGCAAGCGTTACAACGCCTCATCGCCGACTT
CCCCGCCATCGTCCCGCAAGACTCCAGTCTCAGCAGCTTCGCCGGCTTTC
TCAGCGTCCGTCAGCGCCATTTCCGTGTCACCATTGCTGCCGACTGCTCT
CAATTCAGTACAGACGCCCAGCTGTCAACTCTCCTAGCGCCTCACAAACA
ACTGCTCATCAGCAGGCTCAACACATCTGCGCACCCCCATGATTTCCTCG
TTGAACTGCGGGATCTCGTCGAGAGAGCACTTGCGTCGTCTTCCGACAAC
CCCTTGAGTGACCATGTTGAATTGCCGCCTGCCTTCTACTACGAGCGTCT
TCTCGCAGAGATTGATTCTCTGGGATGGCACAGAGTGGAATCAATCGACA
AAACAATGCAGTCCTTGCAACTAAACATTTCTGACGCTGCAAGCAGAAAG
CACACCATTTCTGTCATACTTCCAGTGCACTTTCCCTCACAGCCTCCTAC
CTGCAAAGCAAATCTACCTCTACACTTCGAGCCCAACCTCTCAGACCAGT
ACGTTCTCAACGACATACTATCCCAGTATGAGCAGATCATCCACAAATTC
CAGCCCTTTTTCCGTGTCATGGACGACTTTGATAACAACTCTTGCGTGCT
CGAGCCCGAACGCCCATCCCGTCAAGACTGCTACAGGCGAATATGCATAA
CAAAACATTGCTCCATACGAGTTGAAATTGATCCTCGTGCCCCTATTACC
GGCTTCCCCGAATGTAGGTTTCTAGGCTCCGAGAACGCAGTCGCCCCGTA
CAAACAGCGTTTGAATCAAAATATACACCAGTGGGATATGAGTGGAAATA
CGCTTCCGCGCGAGAACCTTGAGACGGTGTTGGAGTTTAGTTTTCCATCT
CGCGAATCGCTGTTACAAGATTCGGATGATGTGCTTCTGGATGAATGTGG
CATTTGCTATTCATACAGATTGGATGATCGTGTTCCGGATATAGCGTGCG
ACTTGAAGGAGTGCTCCAAACCATATCACCGCCAATGTCTGCTTGATTGG
TTACGCGCTTTGCCGGATACTCGAGAGAGTTTTGGTACCGTTAGTGGTAA
TTGCGTCTACTGCGAGCACCCTATTGCTGTGTCCATACAATCCGTCTAG
back to top

protein sequence of Ggra2822.t1

>Ggra2822.t1 ID=Ggra2822.t1|Name=Ggra2822.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MLMAASVQALQRLIADFPAIVPQDSSLSSFAGFLSVRQRHFRVTIAADCS
QFSTDAQLSTLLAPHKQLLISRLNTSAHPHDFLVELRDLVERALASSSDN
PLSDHVELPPAFYYERLLAEIDSLGWHRVESIDKTMQSLQLNISDAASRK
HTISVILPVHFPSQPPTCKANLPLHFEPNLSDQYVLNDILSQYEQIIHKF
QPFFRVMDDFDNNSCVLEPERPSRQDCYRRICITKHCSIRVEIDPRAPIT
GFPECRFLGSENAVAPYKQRLNQNIHQWDMSGNTLPRENLETVLEFSFPS
RESLLQDSDDVLLDECGICYSYRLDDRVPDIACDLKECSKPYHRQCLLDW
LRALPDTRESFGTVSGNCVYCEHPIAVSIQSV*
back to top

mRNA from alignment at tig00000123_pilon:382774..383922-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2822.t1 ID=Ggra2822.t1|Name=Ggra2822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000123_pilon:382774..383922- (Gracilaria gracilis GNS1m male)
ATGCTGATGGCAGCCAGCGTGCAAGCGTTACAACGCCTCATCGCCGACTT
CCCCGCCATCGTCCCGCAAGACTCCAGTCTCAGCAGCTTCGCCGGCTTTC
TCAGCGTCCGTCAGCGCCATTTCCGTGTCACCATTGCTGCCGACTGCTCT
CAATTCAGTACAGACGCCCAGCTGTCAACTCTCCTAGCGCCTCACAAACA
ACTGCTCATCAGCAGGCTCAACACATCTGCGCACCCCCATGATTTCCTCG
TTGAACTGCGGGATCTCGTCGAGAGAGCACTTGCGTCGTCTTCCGACAAC
CCCTTGAGTGACCATGTTGAATTGCCGCCTGCCTTCTACTACGAGCGTCT
TCTCGCAGAGATTGATTCTCTGGGATGGCACAGAGTGGAATCAATCGACA
AAACAATGCAGTCCTTGCAACTAAACATTTCTGACGCTGCAAGCAGAAAG
CACACCATTTCTGTCATACTTCCAGTGCACTTTCCCTCACAGCCTCCTAC
CTGCAAAGCAAATCTACCTCTACACTTCGAGCCCAACCTCTCAGACCAGT
ACGTTCTCAACGACATACTATCCCAGTATGAGCAGATCATCCACAAATTC
CAGCCCTTTTTCCGTGTCATGGACGACTTTGATAACAACTCTTGCGTGCT
CGAGCCCGAACGCCCATCCCGTCAAGACTGCTACAGGCGAATATGCATAA
CAAAACATTGCTCCATACGAGTTGAAATTGATCCTCGTGCCCCTATTACC
GGCTTCCCCGAATGTAGGTTTCTAGGCTCCGAGAACGCAGTCGCCCCGTA
CAAACAGCGTTTGAATCAAAATATACACCAGTGGGATATGAGTGGAAATA
CGCTTCCGCGCGAGAACCTTGAGACGGTGTTGGAGTTTAGTTTTCCATCT
CGCGAATCGCTGTTACAAGATTCGGATGATGTGCTTCTGGATGAATGTGG
CATTTGCTATTCATACAGATTGGATGATCGTGTTCCGGATATAGCGTGCG
ACTTGAAGGAGTGCTCCAAACCATATCACCGCCAATGTCTGCTTGATTGG
TTACGCGCTTTGCCGGATACTCGAGAGAGTTTTGGTACCGTTAGTGGTAA
TTGCGTCTACTGCGAGCACCCTATTGCTGTGTCCATACAATCCGTCTAG
back to top

Coding sequence (CDS) from alignment at tig00000123_pilon:382774..383922-

>Ggra2822.t1 ID=Ggra2822.t1|Name=Ggra2822.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000123_pilon:382774..383922- (Gracilaria gracilis GNS1m male)
ATGCTGATGGCAGCCAGCGTGCAAGCGTTACAACGCCTCATCGCCGACTT
CCCCGCCATCGTCCCGCAAGACTCCAGTCTCAGCAGCTTCGCCGGCTTTC
TCAGCGTCCGTCAGCGCCATTTCCGTGTCACCATTGCTGCCGACTGCTCT
CAATTCAGTACAGACGCCCAGCTGTCAACTCTCCTAGCGCCTCACAAACA
ACTGCTCATCAGCAGGCTCAACACATCTGCGCACCCCCATGATTTCCTCG
TTGAACTGCGGGATCTCGTCGAGAGAGCACTTGCGTCGTCTTCCGACAAC
CCCTTGAGTGACCATGTTGAATTGCCGCCTGCCTTCTACTACGAGCGTCT
TCTCGCAGAGATTGATTCTCTGGGATGGCACAGAGTGGAATCAATCGACA
AAACAATGCAGTCCTTGCAACTAAACATTTCTGACGCTGCAAGCAGAAAG
CACACCATTTCTGTCATACTTCCAGTGCACTTTCCCTCACAGCCTCCTAC
CTGCAAAGCAAATCTACCTCTACACTTCGAGCCCAACCTCTCAGACCAGT
ACGTTCTCAACGACATACTATCCCAGTATGAGCAGATCATCCACAAATTC
CAGCCCTTTTTCCGTGTCATGGACGACTTTGATAACAACTCTTGCGTGCT
CGAGCCCGAACGCCCATCCCGTCAAGACTGCTACAGGCGAATATGCATAA
CAAAACATTGCTCCATACGAGTTGAAATTGATCCTCGTGCCCCTATTACC
GGCTTCCCCGAATGTAGGTTTCTAGGCTCCGAGAACGCAGTCGCCCCGTA
CAAACAGCGTTTGAATCAAAATATACACCAGTGGGATATGAGTGGAAATA
CGCTTCCGCGCGAGAACCTTGAGACGGTGTTGGAGTTTAGTTTTCCATCT
CGCGAATCGCTGTTACAAGATTCGGATGATGTGCTTCTGGATGAATGTGG
CATTTGCTATTCATACAGATTGGATGATCGTGTTCCGGATATAGCGTGCG
ACTTGAAGGAGTGCTCCAAACCATATCACCGCCAATGTCTGCTTGATTGG
TTACGCGCTTTGCCGGATACTCGAGAGAGTTTTGGTACCGTTAGTGGTAA
TTGCGTCTACTGCGAGCACCCTATTGCTGTGTCCATACAATCCGTCTAG
back to top