Ggra2821.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2821.t1
Unique NameGgra2821.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:381805..382596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703934.1
PFAMsMoCF_biosynth,PAPS_reduct
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00953
KEGG ReactionR00161
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Evalue9.73e-57
EggNOG OGsCOG0175@1|root,KOG2644@2759|Eukaryota
EC2.7.7.2
Descriptionflavin adenine dinucleotide biosynthetic process
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2821Ggra2821Gracilaria gracilis GNS1m malegenetig00000123_pilon 381805..382596 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2821.t1.start1Ggra2821.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 381805..381807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2821.t1.CDS1Ggra2821.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 381805..382596 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2821.t1.exon1Ggra2821.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 381805..382596 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2821.t1.stop1Ggra2821.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 382594..382596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2821.t1Ggra2821.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 381805..382596 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2821.t1 ID=Ggra2821.t1|Name=Ggra2821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MDDACSKMPRKGDAPNGEFKATIVHDENHSETVQNESLRLYSSLMEKAST
YTYIRKALSTLDSAFRLYGPQNVAVAFNGGKDATVVMHLARAALANWCRE
NGTTAQLHCLYMCSSEEEQFSEVNSFICEQVSAYKLSEVEVQLGIKEGIC
EFVKDRTNMCAFVLGTRRSDPHGASMEHFEPSSKGWPPFMRVNPILTWRY
HEVWEFLKQFRLPYCCLYDRGYTSLGSVATTKPNPALKSADSERGYHPAW
MLEDESLERAGRV*
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spliced messenger RNA

>Ggra2821.t1 ID=Ggra2821.t1|Name=Ggra2821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000123_pilon:381805..382596+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGATGCCTGCAGTAAAATGCCGAGGAAAGGAGATGCACCAAACGG
AGAATTCAAGGCTACAATCGTTCACGACGAAAACCATTCCGAAACTGTAC
AAAATGAAAGTCTCCGCCTCTACTCAAGTCTCATGGAAAAAGCGTCCACA
TATACATACATTCGAAAGGCGCTCAGCACCCTTGATTCCGCTTTTCGCCT
CTATGGTCCACAGAACGTAGCTGTTGCGTTTAACGGTGGGAAGGATGCTA
CCGTAGTTATGCATCTTGCGAGAGCAGCCCTGGCAAATTGGTGTCGCGAA
AATGGAACAACTGCGCAGTTGCATTGCCTTTACATGTGCTCTAGTGAAGA
GGAACAGTTTTCGGAAGTGAATTCATTTATATGTGAACAAGTCTCTGCAT
ACAAGCTTTCGGAAGTTGAGGTTCAGCTCGGAATCAAAGAGGGTATATGT
GAGTTCGTCAAGGACCGAACTAATATGTGTGCGTTTGTTCTAGGCACAAG
GCGTTCGGATCCACATGGTGCCTCTATGGAACATTTTGAACCGAGCAGCA
AGGGGTGGCCACCGTTCATGAGGGTGAACCCAATTCTCACGTGGCGCTAC
CATGAGGTATGGGAGTTTTTGAAGCAGTTTCGTCTACCCTATTGCTGTTT
GTATGACAGGGGTTATACAAGTCTTGGGTCGGTTGCAACCACCAAGCCTA
ATCCGGCGTTGAAGAGTGCTGATAGCGAACGGGGATACCACCCTGCTTGG
ATGTTGGAAGATGAATCGTTGGAAAGGGCGGGCCGCGTTTGA
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protein sequence of Ggra2821.t1

>Ggra2821.t1 ID=Ggra2821.t1|Name=Ggra2821.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MDDACSKMPRKGDAPNGEFKATIVHDENHSETVQNESLRLYSSLMEKAST
YTYIRKALSTLDSAFRLYGPQNVAVAFNGGKDATVVMHLARAALANWCRE
NGTTAQLHCLYMCSSEEEQFSEVNSFICEQVSAYKLSEVEVQLGIKEGIC
EFVKDRTNMCAFVLGTRRSDPHGASMEHFEPSSKGWPPFMRVNPILTWRY
HEVWEFLKQFRLPYCCLYDRGYTSLGSVATTKPNPALKSADSERGYHPAW
MLEDESLERAGRV*
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mRNA from alignment at tig00000123_pilon:381805..382596+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2821.t1 ID=Ggra2821.t1|Name=Ggra2821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000123_pilon:381805..382596+ (Gracilaria gracilis GNS1m male)
ATGGACGATGCCTGCAGTAAAATGCCGAGGAAAGGAGATGCACCAAACGG
AGAATTCAAGGCTACAATCGTTCACGACGAAAACCATTCCGAAACTGTAC
AAAATGAAAGTCTCCGCCTCTACTCAAGTCTCATGGAAAAAGCGTCCACA
TATACATACATTCGAAAGGCGCTCAGCACCCTTGATTCCGCTTTTCGCCT
CTATGGTCCACAGAACGTAGCTGTTGCGTTTAACGGTGGGAAGGATGCTA
CCGTAGTTATGCATCTTGCGAGAGCAGCCCTGGCAAATTGGTGTCGCGAA
AATGGAACAACTGCGCAGTTGCATTGCCTTTACATGTGCTCTAGTGAAGA
GGAACAGTTTTCGGAAGTGAATTCATTTATATGTGAACAAGTCTCTGCAT
ACAAGCTTTCGGAAGTTGAGGTTCAGCTCGGAATCAAAGAGGGTATATGT
GAGTTCGTCAAGGACCGAACTAATATGTGTGCGTTTGTTCTAGGCACAAG
GCGTTCGGATCCACATGGTGCCTCTATGGAACATTTTGAACCGAGCAGCA
AGGGGTGGCCACCGTTCATGAGGGTGAACCCAATTCTCACGTGGCGCTAC
CATGAGGTATGGGAGTTTTTGAAGCAGTTTCGTCTACCCTATTGCTGTTT
GTATGACAGGGGTTATACAAGTCTTGGGTCGGTTGCAACCACCAAGCCTA
ATCCGGCGTTGAAGAGTGCTGATAGCGAACGGGGATACCACCCTGCTTGG
ATGTTGGAAGATGAATCGTTGGAAAGGGCGGGCCGCGTTTGA
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Coding sequence (CDS) from alignment at tig00000123_pilon:381805..382596+

>Ggra2821.t1 ID=Ggra2821.t1|Name=Ggra2821.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000123_pilon:381805..382596+ (Gracilaria gracilis GNS1m male)
ATGGACGATGCCTGCAGTAAAATGCCGAGGAAAGGAGATGCACCAAACGG
AGAATTCAAGGCTACAATCGTTCACGACGAAAACCATTCCGAAACTGTAC
AAAATGAAAGTCTCCGCCTCTACTCAAGTCTCATGGAAAAAGCGTCCACA
TATACATACATTCGAAAGGCGCTCAGCACCCTTGATTCCGCTTTTCGCCT
CTATGGTCCACAGAACGTAGCTGTTGCGTTTAACGGTGGGAAGGATGCTA
CCGTAGTTATGCATCTTGCGAGAGCAGCCCTGGCAAATTGGTGTCGCGAA
AATGGAACAACTGCGCAGTTGCATTGCCTTTACATGTGCTCTAGTGAAGA
GGAACAGTTTTCGGAAGTGAATTCATTTATATGTGAACAAGTCTCTGCAT
ACAAGCTTTCGGAAGTTGAGGTTCAGCTCGGAATCAAAGAGGGTATATGT
GAGTTCGTCAAGGACCGAACTAATATGTGTGCGTTTGTTCTAGGCACAAG
GCGTTCGGATCCACATGGTGCCTCTATGGAACATTTTGAACCGAGCAGCA
AGGGGTGGCCACCGTTCATGAGGGTGAACCCAATTCTCACGTGGCGCTAC
CATGAGGTATGGGAGTTTTTGAAGCAGTTTCGTCTACCCTATTGCTGTTT
GTATGACAGGGGTTATACAAGTCTTGGGTCGGTTGCAACCACCAAGCCTA
ATCCGGCGTTGAAGAGTGCTGATAGCGAACGGGGATACCACCCTGCTTGG
ATGTTGGAAGATGAATCGTTGGAAAGGGCGGGCCGCGTTTGA
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