Ggra2820.t3 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2820.t3
Unique Name	Ggra2820.t3
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000123_pilon	contig	tig00000123_pilon:380049..380918 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_05382T0
PFAMs	UPF0160
Max annot lvl	4751\|Fungi
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0016787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	3.94e-95
EggNOG OGs	COG4286@1\|root,KOG2948@2759\|Eukaryota,38BVY@33154\|Opisthokonta,3NVK7@4751\|Fungi
Description	MYG1 protein
COG category	IQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2820	Ggra2820	Gracilaria gracilis GNS1m male	gene	tig00000123_pilon 380049..381059 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2820.t3.stop1	Ggra2820.t3.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000123_pilon 380049..380051 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2820.t3.CDS1	Ggra2820.t3.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000123_pilon 380049..380918 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2820.t3.exon1	Ggra2820.t3.exon1	Gracilaria gracilis GNS1m male	exon	tig00000123_pilon 380049..380918 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2820.t3.start1	Ggra2820.t3.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000123_pilon 380916..380918 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2820.t3	Ggra2820.t3	Gracilaria gracilis GNS1m male	polypeptide	tig00000123_pilon 380049..380918 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000123_pilon:380049..380918-
coding sequence from alignment at tig00000123_pilon:380049..380918-

mRNA sequence

>Ggra2820.t3 ID=Ggra2820.t3|Name=Ggra2820.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
LEEAQIVVDVGSVYNPDAQRFDHHQRGFCTTFSPSGKRSRTKLSSAGLIY
KHYGAEVIRDVARVNGIELEEEDAASVYHKVYDCFMEAIDAIDNGIMMYE
SSEPPKYESSTDLSSRVAKLNAEWYEQNPDQDANFLKAMEMAGKEMDDCV
LHILKSWLPARSIISRAFKQRSTHHKSGSILVLLEWAPWKDHLFSMEEDE
AENGKVEILYVVYKDMTGTSWRIQCVPVAKGSFQSRKPLPEPWRGLRDEE
LSSMTGITDCVFAHASGFIGGNKNFEGALEMARKALETE*

spliced messenger RNA

>Ggra2820.t3 ID=Ggra2820.t3|Name=Ggra2820.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000123_pilon:380049..380918- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGAAGAAGCACAGATTGTTGTGGACGTAGGTTCTGTCTACAACCCGGA
TGCTCAAAGATTCGATCATCATCAGAGAGGTTTTTGCACAACCTTTTCCC
CAAGTGGAAAGCGATCTCGTACAAAACTCTCCAGCGCGGGATTGATTTAC
AAGCATTATGGTGCAGAGGTAATTCGCGACGTGGCCCGCGTAAATGGTAT
CGAATTAGAGGAAGAGGATGCAGCATCTGTGTACCACAAAGTTTACGACT
GTTTTATGGAAGCCATCGATGCTATTGATAATGGCATTATGATGTATGAA
TCCTCTGAACCGCCAAAGTATGAATCATCAACTGATCTTAGCTCTCGTGT
AGCAAAGTTAAATGCTGAATGGTATGAGCAAAACCCAGATCAAGATGCGA
ACTTTTTAAAGGCAATGGAGATGGCTGGTAAGGAAATGGATGATTGCGTA
TTGCATATTTTAAAGAGCTGGTTACCTGCACGATCCATAATATCACGCGC
CTTTAAACAAAGGTCTACCCACCACAAGAGCGGTTCTATTCTTGTGCTGT
TAGAATGGGCTCCATGGAAGGACCATTTGTTCTCAATGGAGGAAGACGAG
GCAGAGAACGGGAAAGTGGAGATTCTGTACGTCGTATACAAGGATATGAC
GGGTACTTCATGGCGTATCCAATGCGTCCCAGTTGCAAAAGGTTCCTTCC
AATCAAGAAAACCACTCCCTGAACCTTGGCGCGGTTTGAGAGATGAAGAA
TTATCCTCAATGACTGGAATCACGGACTGTGTTTTTGCTCACGCGTCAGG
ATTCATTGGGGGTAACAAGAATTTCGAAGGTGCGTTAGAAATGGCGAGGA
AGGCTCTGGAAACCGAATAA

protein sequence of Ggra2820.t3

>Ggra2820.t3 ID=Ggra2820.t3|Name=Ggra2820.t3|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
LEEAQIVVDVGSVYNPDAQRFDHHQRGFCTTFSPSGKRSRTKLSSAGLIY
KHYGAEVIRDVARVNGIELEEEDAASVYHKVYDCFMEAIDAIDNGIMMYE
SSEPPKYESSTDLSSRVAKLNAEWYEQNPDQDANFLKAMEMAGKEMDDCV
LHILKSWLPARSIISRAFKQRSTHHKSGSILVLLEWAPWKDHLFSMEEDE
AENGKVEILYVVYKDMTGTSWRIQCVPVAKGSFQSRKPLPEPWRGLRDEE
LSSMTGITDCVFAHASGFIGGNKNFEGALEMARKALETE*

mRNA from alignment at tig00000123_pilon:380049..380918-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2820.t3 ID=Ggra2820.t3|Name=Ggra2820.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000123_pilon:380049..380918- (Gracilaria gracilis GNS1m male)
TTGGAAGAAGCACAGATTGTTGTGGACGTAGGTTCTGTCTACAACCCGGA
TGCTCAAAGATTCGATCATCATCAGAGAGGTTTTTGCACAACCTTTTCCC
CAAGTGGAAAGCGATCTCGTACAAAACTCTCCAGCGCGGGATTGATTTAC
AAGCATTATGGTGCAGAGGTAATTCGCGACGTGGCCCGCGTAAATGGTAT
CGAATTAGAGGAAGAGGATGCAGCATCTGTGTACCACAAAGTTTACGACT
GTTTTATGGAAGCCATCGATGCTATTGATAATGGCATTATGATGTATGAA
TCCTCTGAACCGCCAAAGTATGAATCATCAACTGATCTTAGCTCTCGTGT
AGCAAAGTTAAATGCTGAATGGTATGAGCAAAACCCAGATCAAGATGCGA
ACTTTTTAAAGGCAATGGAGATGGCTGGTAAGGAAATGGATGATTGCGTA
TTGCATATTTTAAAGAGCTGGTTACCTGCACGATCCATAATATCACGCGC
CTTTAAACAAAGGTCTACCCACCACAAGAGCGGTTCTATTCTTGTGCTGT
TAGAATGGGCTCCATGGAAGGACCATTTGTTCTCAATGGAGGAAGACGAG
GCAGAGAACGGGAAAGTGGAGATTCTGTACGTCGTATACAAGGATATGAC
GGGTACTTCATGGCGTATCCAATGCGTCCCAGTTGCAAAAGGTTCCTTCC
AATCAAGAAAACCACTCCCTGAACCTTGGCGCGGTTTGAGAGATGAAGAA
TTATCCTCAATGACTGGAATCACGGACTGTGTTTTTGCTCACGCGTCAGG
ATTCATTGGGGGTAACAAGAATTTCGAAGGTGCGTTAGAAATGGCGAGGA
AGGCTCTGGAAACCGAATAA

Coding sequence (CDS) from alignment at tig00000123_pilon:380049..380918-

>Ggra2820.t3 ID=Ggra2820.t3|Name=Ggra2820.t3|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000123_pilon:380049..380918- (Gracilaria gracilis GNS1m male)
TTGGAAGAAGCACAGATTGTTGTGGACGTAGGTTCTGTCTACAACCCGGA
TGCTCAAAGATTCGATCATCATCAGAGAGGTTTTTGCACAACCTTTTCCC
CAAGTGGAAAGCGATCTCGTACAAAACTCTCCAGCGCGGGATTGATTTAC
AAGCATTATGGTGCAGAGGTAATTCGCGACGTGGCCCGCGTAAATGGTAT
CGAATTAGAGGAAGAGGATGCAGCATCTGTGTACCACAAAGTTTACGACT
GTTTTATGGAAGCCATCGATGCTATTGATAATGGCATTATGATGTATGAA
TCCTCTGAACCGCCAAAGTATGAATCATCAACTGATCTTAGCTCTCGTGT
AGCAAAGTTAAATGCTGAATGGTATGAGCAAAACCCAGATCAAGATGCGA
ACTTTTTAAAGGCAATGGAGATGGCTGGTAAGGAAATGGATGATTGCGTA
TTGCATATTTTAAAGAGCTGGTTACCTGCACGATCCATAATATCACGCGC
CTTTAAACAAAGGTCTACCCACCACAAGAGCGGTTCTATTCTTGTGCTGT
TAGAATGGGCTCCATGGAAGGACCATTTGTTCTCAATGGAGGAAGACGAG
GCAGAGAACGGGAAAGTGGAGATTCTGTACGTCGTATACAAGGATATGAC
GGGTACTTCATGGCGTATCCAATGCGTCCCAGTTGCAAAAGGTTCCTTCC
AATCAAGAAAACCACTCCCTGAACCTTGGCGCGGTTTGAGAGATGAAGAA
TTATCCTCAATGACTGGAATCACGGACTGTGTTTTTGCTCACGCGTCAGG
ATTCATTGGGGGTAACAAGAATTTCGAAGGTGCGTTAGAAATGGCGAGGA
AGGCTCTGGAAACCGAATAA