Ggra2817.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2817.t1
Unique NameGgra2817.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:373364..374803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1379270.AUXF01000005_gene406
PFAMsAmino_oxidase
Max annot lvl142182|Gemmatimonadetes
KEGG rclassRC00885
KEGG koko:K00231
KEGG ReactionR03222,R04178
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Evalue2.91e-84
EggNOG OGsCOG1232@1|root,COG1232@2|Bacteria,1ZUZT@142182|Gemmatimonadetes
EC1.3.3.15,1.3.3.4
DescriptionCatalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2817Ggra2817Gracilaria gracilis GNS1m malegenetig00000123_pilon 373364..374803 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2817.t1.stop1Ggra2817.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 373364..373366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2817.t1.CDS1Ggra2817.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 373364..374803 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2817.t1.exon1Ggra2817.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 373364..374803 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2817.t1.start1Ggra2817.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 374801..374803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2817.t1Ggra2817.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 373364..374803 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2817.t1 ID=Ggra2817.t1|Name=Ggra2817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp
MKDERKTRRVAVLGGGPTGLSAAYRLVCDRTPIQVDLYEKSTRFGGAVFS
VEGGGFIYEMGPNSMNAKHQQVADLIYQKLNLSPHVLKRDAAAKNFFIVK
NGQMIPMPRSPIQFCTTKMLSWQAKLRILLEPFVPRVAESDADRESVNDF
FRRRFGTEFVDYVIDPALTGIYSAQPAGLSMKHALNKVWEVERRKGSVVG
GFLRGGMKTPVDPRFEPYSGKQLLESFSYDSGMQVLTSRLVENIQKLNER
GKLYRNVNVHSISQDPHGAWRINGRGKYDAVISTIPVHALGAIESNVEAI
EKGFKKLADRVMYAPVSVTVLGFDRSQVSSRLDGFGVLLPSKEEKKVLGI
NFTSSNYPSRAEDPSKVYLTVYLGGSRTPDIVTRSSNEIVETATKEVQQV
LGITGKPFHSEVKNWPKGIPQYHPGYDSALNTMAQVERRAPGLVLGGNYR
GGVGLPDALLSGLKSAERIIEYLQVTMPK*
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spliced messenger RNA

>Ggra2817.t1 ID=Ggra2817.t1|Name=Ggra2817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000123_pilon:373364..374803- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGACGAGCGGAAGACGCGCCGTGTAGCTGTACTCGGCGGAGGCCC
AACAGGTCTATCTGCCGCATATCGTCTCGTATGTGACAGAACTCCGATTC
AAGTTGATCTCTATGAAAAATCGACCAGATTTGGGGGTGCTGTCTTCTCC
GTTGAGGGTGGTGGTTTTATCTATGAAATGGGCCCCAACTCCATGAATGC
CAAACATCAGCAAGTAGCAGACCTTATATACCAAAAGTTAAATCTCTCCC
CACACGTATTGAAGCGAGATGCCGCCGCGAAAAACTTCTTTATCGTTAAA
AATGGACAGATGATTCCCATGCCGAGGTCCCCAATTCAGTTCTGCACTAC
AAAAATGCTCTCCTGGCAAGCAAAGCTCAGAATTCTGCTTGAACCTTTTG
TTCCTAGAGTCGCAGAAAGTGATGCAGACCGCGAAAGTGTTAACGATTTC
TTCCGCAGACGATTCGGAACAGAGTTTGTAGATTACGTCATCGACCCTGC
TTTGACTGGAATCTACTCTGCCCAACCCGCCGGTCTGTCCATGAAGCATG
CATTGAACAAAGTATGGGAAGTAGAGCGAAGGAAGGGCTCCGTCGTTGGA
GGTTTTCTGCGTGGTGGCATGAAGACCCCTGTGGACCCTCGTTTTGAACC
CTACTCTGGTAAACAGTTACTTGAGAGTTTCAGCTATGATAGCGGTATGC
AAGTTCTAACATCAAGACTGGTCGAAAACATTCAAAAACTGAACGAACGG
GGGAAGCTTTATAGAAATGTCAACGTGCATAGCATAAGTCAGGACCCGCA
TGGAGCTTGGCGTATTAATGGACGCGGAAAGTATGATGCTGTGATTTCTA
CTATACCGGTTCATGCTTTAGGTGCAATTGAATCCAACGTTGAGGCCATC
GAAAAAGGGTTCAAGAAGCTTGCAGATCGCGTTATGTACGCCCCTGTTTC
TGTCACCGTGCTTGGATTCGATCGGAGCCAAGTAAGCTCGCGTCTAGATG
GCTTTGGAGTGTTACTACCTTCCAAGGAAGAAAAGAAGGTGTTGGGCATC
AACTTCACATCATCTAACTACCCATCTCGTGCAGAAGATCCGAGCAAAGT
ATACCTAACCGTATACCTTGGAGGAAGCAGGACCCCGGATATTGTAACCC
GCTCATCCAACGAGATAGTAGAGACGGCAACGAAAGAAGTGCAGCAGGTG
CTTGGAATCACAGGAAAGCCGTTTCATTCTGAAGTTAAGAACTGGCCAAA
AGGTATACCACAGTATCACCCAGGGTATGACTCTGCTCTTAACACGATGG
CACAAGTGGAAAGACGTGCTCCTGGTCTCGTACTGGGTGGAAACTATCGG
GGCGGAGTGGGGTTGCCAGATGCGTTGTTATCTGGTCTCAAATCCGCTGA
GCGCATTATCGAGTATCTCCAAGTGACAATGCCTAAATGA
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protein sequence of Ggra2817.t1

>Ggra2817.t1 ID=Ggra2817.t1|Name=Ggra2817.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=480bp
MKDERKTRRVAVLGGGPTGLSAAYRLVCDRTPIQVDLYEKSTRFGGAVFS
VEGGGFIYEMGPNSMNAKHQQVADLIYQKLNLSPHVLKRDAAAKNFFIVK
NGQMIPMPRSPIQFCTTKMLSWQAKLRILLEPFVPRVAESDADRESVNDF
FRRRFGTEFVDYVIDPALTGIYSAQPAGLSMKHALNKVWEVERRKGSVVG
GFLRGGMKTPVDPRFEPYSGKQLLESFSYDSGMQVLTSRLVENIQKLNER
GKLYRNVNVHSISQDPHGAWRINGRGKYDAVISTIPVHALGAIESNVEAI
EKGFKKLADRVMYAPVSVTVLGFDRSQVSSRLDGFGVLLPSKEEKKVLGI
NFTSSNYPSRAEDPSKVYLTVYLGGSRTPDIVTRSSNEIVETATKEVQQV
LGITGKPFHSEVKNWPKGIPQYHPGYDSALNTMAQVERRAPGLVLGGNYR
GGVGLPDALLSGLKSAERIIEYLQVTMPK*
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mRNA from alignment at tig00000123_pilon:373364..374803-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2817.t1 ID=Ggra2817.t1|Name=Ggra2817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000123_pilon:373364..374803- (Gracilaria gracilis GNS1m male)
ATGAAAGACGAGCGGAAGACGCGCCGTGTAGCTGTACTCGGCGGAGGCCC
AACAGGTCTATCTGCCGCATATCGTCTCGTATGTGACAGAACTCCGATTC
AAGTTGATCTCTATGAAAAATCGACCAGATTTGGGGGTGCTGTCTTCTCC
GTTGAGGGTGGTGGTTTTATCTATGAAATGGGCCCCAACTCCATGAATGC
CAAACATCAGCAAGTAGCAGACCTTATATACCAAAAGTTAAATCTCTCCC
CACACGTATTGAAGCGAGATGCCGCCGCGAAAAACTTCTTTATCGTTAAA
AATGGACAGATGATTCCCATGCCGAGGTCCCCAATTCAGTTCTGCACTAC
AAAAATGCTCTCCTGGCAAGCAAAGCTCAGAATTCTGCTTGAACCTTTTG
TTCCTAGAGTCGCAGAAAGTGATGCAGACCGCGAAAGTGTTAACGATTTC
TTCCGCAGACGATTCGGAACAGAGTTTGTAGATTACGTCATCGACCCTGC
TTTGACTGGAATCTACTCTGCCCAACCCGCCGGTCTGTCCATGAAGCATG
CATTGAACAAAGTATGGGAAGTAGAGCGAAGGAAGGGCTCCGTCGTTGGA
GGTTTTCTGCGTGGTGGCATGAAGACCCCTGTGGACCCTCGTTTTGAACC
CTACTCTGGTAAACAGTTACTTGAGAGTTTCAGCTATGATAGCGGTATGC
AAGTTCTAACATCAAGACTGGTCGAAAACATTCAAAAACTGAACGAACGG
GGGAAGCTTTATAGAAATGTCAACGTGCATAGCATAAGTCAGGACCCGCA
TGGAGCTTGGCGTATTAATGGACGCGGAAAGTATGATGCTGTGATTTCTA
CTATACCGGTTCATGCTTTAGGTGCAATTGAATCCAACGTTGAGGCCATC
GAAAAAGGGTTCAAGAAGCTTGCAGATCGCGTTATGTACGCCCCTGTTTC
TGTCACCGTGCTTGGATTCGATCGGAGCCAAGTAAGCTCGCGTCTAGATG
GCTTTGGAGTGTTACTACCTTCCAAGGAAGAAAAGAAGGTGTTGGGCATC
AACTTCACATCATCTAACTACCCATCTCGTGCAGAAGATCCGAGCAAAGT
ATACCTAACCGTATACCTTGGAGGAAGCAGGACCCCGGATATTGTAACCC
GCTCATCCAACGAGATAGTAGAGACGGCAACGAAAGAAGTGCAGCAGGTG
CTTGGAATCACAGGAAAGCCGTTTCATTCTGAAGTTAAGAACTGGCCAAA
AGGTATACCACAGTATCACCCAGGGTATGACTCTGCTCTTAACACGATGG
CACAAGTGGAAAGACGTGCTCCTGGTCTCGTACTGGGTGGAAACTATCGG
GGCGGAGTGGGGTTGCCAGATGCGTTGTTATCTGGTCTCAAATCCGCTGA
GCGCATTATCGAGTATCTCCAAGTGACAATGCCTAAATGA
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Coding sequence (CDS) from alignment at tig00000123_pilon:373364..374803-

>Ggra2817.t1 ID=Ggra2817.t1|Name=Ggra2817.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00000123_pilon:373364..374803- (Gracilaria gracilis GNS1m male)
ATGAAAGACGAGCGGAAGACGCGCCGTGTAGCTGTACTCGGCGGAGGCCC
AACAGGTCTATCTGCCGCATATCGTCTCGTATGTGACAGAACTCCGATTC
AAGTTGATCTCTATGAAAAATCGACCAGATTTGGGGGTGCTGTCTTCTCC
GTTGAGGGTGGTGGTTTTATCTATGAAATGGGCCCCAACTCCATGAATGC
CAAACATCAGCAAGTAGCAGACCTTATATACCAAAAGTTAAATCTCTCCC
CACACGTATTGAAGCGAGATGCCGCCGCGAAAAACTTCTTTATCGTTAAA
AATGGACAGATGATTCCCATGCCGAGGTCCCCAATTCAGTTCTGCACTAC
AAAAATGCTCTCCTGGCAAGCAAAGCTCAGAATTCTGCTTGAACCTTTTG
TTCCTAGAGTCGCAGAAAGTGATGCAGACCGCGAAAGTGTTAACGATTTC
TTCCGCAGACGATTCGGAACAGAGTTTGTAGATTACGTCATCGACCCTGC
TTTGACTGGAATCTACTCTGCCCAACCCGCCGGTCTGTCCATGAAGCATG
CATTGAACAAAGTATGGGAAGTAGAGCGAAGGAAGGGCTCCGTCGTTGGA
GGTTTTCTGCGTGGTGGCATGAAGACCCCTGTGGACCCTCGTTTTGAACC
CTACTCTGGTAAACAGTTACTTGAGAGTTTCAGCTATGATAGCGGTATGC
AAGTTCTAACATCAAGACTGGTCGAAAACATTCAAAAACTGAACGAACGG
GGGAAGCTTTATAGAAATGTCAACGTGCATAGCATAAGTCAGGACCCGCA
TGGAGCTTGGCGTATTAATGGACGCGGAAAGTATGATGCTGTGATTTCTA
CTATACCGGTTCATGCTTTAGGTGCAATTGAATCCAACGTTGAGGCCATC
GAAAAAGGGTTCAAGAAGCTTGCAGATCGCGTTATGTACGCCCCTGTTTC
TGTCACCGTGCTTGGATTCGATCGGAGCCAAGTAAGCTCGCGTCTAGATG
GCTTTGGAGTGTTACTACCTTCCAAGGAAGAAAAGAAGGTGTTGGGCATC
AACTTCACATCATCTAACTACCCATCTCGTGCAGAAGATCCGAGCAAAGT
ATACCTAACCGTATACCTTGGAGGAAGCAGGACCCCGGATATTGTAACCC
GCTCATCCAACGAGATAGTAGAGACGGCAACGAAAGAAGTGCAGCAGGTG
CTTGGAATCACAGGAAAGCCGTTTCATTCTGAAGTTAAGAACTGGCCAAA
AGGTATACCACAGTATCACCCAGGGTATGACTCTGCTCTTAACACGATGG
CACAAGTGGAAAGACGTGCTCCTGGTCTCGTACTGGGTGGAAACTATCGG
GGCGGAGTGGGGTTGCCAGATGCGTTGTTATCTGGTCTCAAATCCGCTGA
GCGCATTATCGAGTATCTCCAAGTGACAATGCCTAAATGA
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