Ggra2809.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2809.t1
Unique NameGgra2809.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:350517..351128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123393.KB891316_gene1541
Preferred nametag
PFAMsAdenine_glyco
Max annot lvl28216|Betaproteobacteria
KEGG koko:K01246
KEGG Pathwayko03410,map03410
Evalue1.12e-66
EggNOG OGsCOG2818@1|root,COG2818@2|Bacteria,1R9X5@1224|Proteobacteria,2VQC5@28216|Betaproteobacteria
EC3.2.2.20
Descriptionglycosylase
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2809Ggra2809Gracilaria gracilis GNS1m malegenetig00000123_pilon 350517..351128 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2809.t1.stop1Ggra2809.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 350517..350519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2809.t1.CDS1Ggra2809.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 350517..351128 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2809.t1.exon1Ggra2809.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 350517..351128 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2809.t1.start1Ggra2809.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 351126..351128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2809.t1Ggra2809.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 350517..351128 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2809.t1 ID=Ggra2809.t1|Name=Ggra2809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=204bp
MAPASKRQKKDPRCEWSTLTPDLMQYHDEEWGVPIYDDKKMFEFLLLETF
QAGLRWLTILRKRDGFANAFHDFDIDQIAAMTEEDVLRLQQDTSIVRNKL
KIRAAISNAKAVIAMREEGIGLAHYFWNWVEYVPQRNCSNGKWISKNDLS
DEISKDLKKRGFKFVGNAIIYAHLQATGIINDHSPSCPRHKQVQKLLKKK
PKD*
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spliced messenger RNA

>Ggra2809.t1 ID=Ggra2809.t1|Name=Ggra2809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00000123_pilon:350517..351128- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCGCGTCCAAGCGGCAGAAAAAGGACCCTCGCTGTGAATGGAG
CACCTTAACCCCGGACTTGATGCAGTACCATGACGAAGAGTGGGGCGTCC
CAATATACGATGACAAGAAGATGTTTGAGTTTCTCCTGCTTGAGACCTTC
CAAGCAGGTCTCAGATGGCTTACTATTCTTCGAAAACGAGACGGTTTTGC
GAACGCGTTCCATGATTTTGACATTGATCAAATCGCAGCCATGACAGAGG
AGGACGTTCTGCGTCTTCAGCAGGACACATCCATTGTTCGAAATAAGCTG
AAGATTCGGGCTGCCATAAGCAACGCAAAGGCAGTCATCGCTATGAGAGA
GGAGGGCATTGGCCTTGCGCACTACTTTTGGAACTGGGTTGAATATGTTC
CTCAACGCAACTGTTCGAATGGGAAGTGGATATCGAAGAATGATCTTTCA
GATGAAATCTCGAAGGATTTGAAGAAAAGGGGTTTCAAGTTTGTTGGTAA
TGCTATCATATATGCTCATTTGCAGGCTACGGGCATAATTAACGATCATA
GCCCTAGCTGTCCGAGACATAAGCAGGTTCAAAAGTTGCTCAAGAAGAAG
CCTAAGGATTGA
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protein sequence of Ggra2809.t1

>Ggra2809.t1 ID=Ggra2809.t1|Name=Ggra2809.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=204bp
MAPASKRQKKDPRCEWSTLTPDLMQYHDEEWGVPIYDDKKMFEFLLLETF
QAGLRWLTILRKRDGFANAFHDFDIDQIAAMTEEDVLRLQQDTSIVRNKL
KIRAAISNAKAVIAMREEGIGLAHYFWNWVEYVPQRNCSNGKWISKNDLS
DEISKDLKKRGFKFVGNAIIYAHLQATGIINDHSPSCPRHKQVQKLLKKK
PKD*
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mRNA from alignment at tig00000123_pilon:350517..351128-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2809.t1 ID=Ggra2809.t1|Name=Ggra2809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00000123_pilon:350517..351128- (Gracilaria gracilis GNS1m male)
ATGGCTCCCGCGTCCAAGCGGCAGAAAAAGGACCCTCGCTGTGAATGGAG
CACCTTAACCCCGGACTTGATGCAGTACCATGACGAAGAGTGGGGCGTCC
CAATATACGATGACAAGAAGATGTTTGAGTTTCTCCTGCTTGAGACCTTC
CAAGCAGGTCTCAGATGGCTTACTATTCTTCGAAAACGAGACGGTTTTGC
GAACGCGTTCCATGATTTTGACATTGATCAAATCGCAGCCATGACAGAGG
AGGACGTTCTGCGTCTTCAGCAGGACACATCCATTGTTCGAAATAAGCTG
AAGATTCGGGCTGCCATAAGCAACGCAAAGGCAGTCATCGCTATGAGAGA
GGAGGGCATTGGCCTTGCGCACTACTTTTGGAACTGGGTTGAATATGTTC
CTCAACGCAACTGTTCGAATGGGAAGTGGATATCGAAGAATGATCTTTCA
GATGAAATCTCGAAGGATTTGAAGAAAAGGGGTTTCAAGTTTGTTGGTAA
TGCTATCATATATGCTCATTTGCAGGCTACGGGCATAATTAACGATCATA
GCCCTAGCTGTCCGAGACATAAGCAGGTTCAAAAGTTGCTCAAGAAGAAG
CCTAAGGATTGA
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Coding sequence (CDS) from alignment at tig00000123_pilon:350517..351128-

>Ggra2809.t1 ID=Ggra2809.t1|Name=Ggra2809.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=612bp|location=Sequence derived from alignment at tig00000123_pilon:350517..351128- (Gracilaria gracilis GNS1m male)
ATGGCTCCCGCGTCCAAGCGGCAGAAAAAGGACCCTCGCTGTGAATGGAG
CACCTTAACCCCGGACTTGATGCAGTACCATGACGAAGAGTGGGGCGTCC
CAATATACGATGACAAGAAGATGTTTGAGTTTCTCCTGCTTGAGACCTTC
CAAGCAGGTCTCAGATGGCTTACTATTCTTCGAAAACGAGACGGTTTTGC
GAACGCGTTCCATGATTTTGACATTGATCAAATCGCAGCCATGACAGAGG
AGGACGTTCTGCGTCTTCAGCAGGACACATCCATTGTTCGAAATAAGCTG
AAGATTCGGGCTGCCATAAGCAACGCAAAGGCAGTCATCGCTATGAGAGA
GGAGGGCATTGGCCTTGCGCACTACTTTTGGAACTGGGTTGAATATGTTC
CTCAACGCAACTGTTCGAATGGGAAGTGGATATCGAAGAATGATCTTTCA
GATGAAATCTCGAAGGATTTGAAGAAAAGGGGTTTCAAGTTTGTTGGTAA
TGCTATCATATATGCTCATTTGCAGGCTACGGGCATAATTAACGATCATA
GCCCTAGCTGTCCGAGACATAAGCAGGTTCAAAAGTTGCTCAAGAAGAAG
CCTAAGGATTGA
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