Ggra2792.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2792.t1
Unique NameGgra2792.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:175707..176351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2792Ggra2792Gracilaria gracilis GNS1m malegenetig00000123_pilon 175707..176351 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2792.t1.start1Ggra2792.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 175707..175709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2792.t1.CDS1Ggra2792.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 175707..176351 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2792.t1.exon1Ggra2792.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 175707..176351 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2792.t1.stop1Ggra2792.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 176349..176351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2792.t1Ggra2792.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 175707..176351 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2792.t1 ID=Ggra2792.t1|Name=Ggra2792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
MKAAIALMVLLISASIAKPITMQSEALNWINNEETTISSTFSSNLATVSA
REWKASALEKAKNKLHMLKKELRRLEIVYRCEKEKSSILQALYRKKKSFR
CLSYKKRNVNGCHRMHALRKEVKHGQKMCRKNRSCKKKYVWPLQWKLKML
SKSCNCEKGVSLMKMIWRAKEIRCGKGRNAWKVRSEIRRLENRISYLEET
LIVKPSVAPRPKRD*
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spliced messenger RNA

>Ggra2792.t1 ID=Ggra2792.t1|Name=Ggra2792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000123_pilon:175707..176351+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCGCAATCGCACTTATGGTCCTGCTGATCTCTGCATCCATAGC
CAAGCCAATTACCATGCAATCCGAAGCCCTCAACTGGATCAATAATGAAG
AAACCACAATCTCATCTACATTCTCATCGAATCTGGCTACTGTATCTGCC
CGTGAATGGAAAGCAAGTGCGTTAGAAAAGGCCAAGAACAAGCTGCATAT
GTTAAAGAAGGAGCTAAGACGGCTGGAAATCGTATATCGATGTGAGAAGG
AGAAGTCAAGCATACTTCAAGCCTTGTACAGGAAGAAGAAGTCGTTCAGA
TGCTTGAGCTACAAAAAACGCAATGTGAACGGGTGTCACAGAATGCATGC
TTTGCGCAAAGAAGTGAAGCACGGACAGAAGATGTGCAGAAAAAACAGGA
GCTGTAAAAAGAAGTATGTGTGGCCTCTCCAATGGAAGCTGAAGATGCTG
TCCAAATCGTGTAACTGCGAGAAGGGAGTCTCGCTTATGAAGATGATCTG
GAGGGCAAAGGAGATTCGGTGCGGAAAAGGCAGGAACGCTTGGAAGGTGA
GGAGCGAAATAAGAAGGTTGGAGAACAGAATTTCGTATTTGGAGGAGACT
TTGATTGTGAAACCCAGTGTTGCTCCTAGACCGAAGAGAGACTGA
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protein sequence of Ggra2792.t1

>Ggra2792.t1 ID=Ggra2792.t1|Name=Ggra2792.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MKAAIALMVLLISASIAKPITMQSEALNWINNEETTISSTFSSNLATVSA
REWKASALEKAKNKLHMLKKELRRLEIVYRCEKEKSSILQALYRKKKSFR
CLSYKKRNVNGCHRMHALRKEVKHGQKMCRKNRSCKKKYVWPLQWKLKML
SKSCNCEKGVSLMKMIWRAKEIRCGKGRNAWKVRSEIRRLENRISYLEET
LIVKPSVAPRPKRD*
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mRNA from alignment at tig00000123_pilon:175707..176351+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2792.t1 ID=Ggra2792.t1|Name=Ggra2792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000123_pilon:175707..176351+ (Gracilaria gracilis GNS1m male)
ATGAAGGCCGCAATCGCACTTATGGTCCTGCTGATCTCTGCATCCATAGC
CAAGCCAATTACCATGCAATCCGAAGCCCTCAACTGGATCAATAATGAAG
AAACCACAATCTCATCTACATTCTCATCGAATCTGGCTACTGTATCTGCC
CGTGAATGGAAAGCAAGTGCGTTAGAAAAGGCCAAGAACAAGCTGCATAT
GTTAAAGAAGGAGCTAAGACGGCTGGAAATCGTATATCGATGTGAGAAGG
AGAAGTCAAGCATACTTCAAGCCTTGTACAGGAAGAAGAAGTCGTTCAGA
TGCTTGAGCTACAAAAAACGCAATGTGAACGGGTGTCACAGAATGCATGC
TTTGCGCAAAGAAGTGAAGCACGGACAGAAGATGTGCAGAAAAAACAGGA
GCTGTAAAAAGAAGTATGTGTGGCCTCTCCAATGGAAGCTGAAGATGCTG
TCCAAATCGTGTAACTGCGAGAAGGGAGTCTCGCTTATGAAGATGATCTG
GAGGGCAAAGGAGATTCGGTGCGGAAAAGGCAGGAACGCTTGGAAGGTGA
GGAGCGAAATAAGAAGGTTGGAGAACAGAATTTCGTATTTGGAGGAGACT
TTGATTGTGAAACCCAGTGTTGCTCCTAGACCGAAGAGAGACTGA
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Coding sequence (CDS) from alignment at tig00000123_pilon:175707..176351+

>Ggra2792.t1 ID=Ggra2792.t1|Name=Ggra2792.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000123_pilon:175707..176351+ (Gracilaria gracilis GNS1m male)
ATGAAGGCCGCAATCGCACTTATGGTCCTGCTGATCTCTGCATCCATAGC
CAAGCCAATTACCATGCAATCCGAAGCCCTCAACTGGATCAATAATGAAG
AAACCACAATCTCATCTACATTCTCATCGAATCTGGCTACTGTATCTGCC
CGTGAATGGAAAGCAAGTGCGTTAGAAAAGGCCAAGAACAAGCTGCATAT
GTTAAAGAAGGAGCTAAGACGGCTGGAAATCGTATATCGATGTGAGAAGG
AGAAGTCAAGCATACTTCAAGCCTTGTACAGGAAGAAGAAGTCGTTCAGA
TGCTTGAGCTACAAAAAACGCAATGTGAACGGGTGTCACAGAATGCATGC
TTTGCGCAAAGAAGTGAAGCACGGACAGAAGATGTGCAGAAAAAACAGGA
GCTGTAAAAAGAAGTATGTGTGGCCTCTCCAATGGAAGCTGAAGATGCTG
TCCAAATCGTGTAACTGCGAGAAGGGAGTCTCGCTTATGAAGATGATCTG
GAGGGCAAAGGAGATTCGGTGCGGAAAAGGCAGGAACGCTTGGAAGGTGA
GGAGCGAAATAAGAAGGTTGGAGAACAGAATTTCGTATTTGGAGGAGACT
TTGATTGTGAAACCCAGTGTTGCTCCTAGACCGAAGAGAGACTGA
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