Ggra2791.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2791.t1
Unique NameGgra2791.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:172682..173308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002946011.1
PFAMsPeptidase_C1
Max annot lvl2759|Eukaryota
Evalue2.95e-17
EggNOG OGsCOG4870@1|root,2S8PN@2759|Eukaryota
DescriptionBelongs to the peptidase C1 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2791Ggra2791Gracilaria gracilis GNS1m malegenetig00000123_pilon 172682..173308 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2791.t1.start1Ggra2791.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 172682..172684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2791.t1.CDS1Ggra2791.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 172682..173308 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2791.t1.exon1Ggra2791.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 172682..173308 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2791.t1.stop1Ggra2791.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 173306..173308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2791.t1Ggra2791.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 172682..173308 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2791.t1 ID=Ggra2791.t1|Name=Ggra2791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=209bp
MVTLTGFVLLLSFACFAQNYPALQSSVLMRKELLTNSLEHYSYRMLRNTG
NHRYPVSNTQVSFEQLVSTGLVVSKGSSGILNFNITLNAVQASTLATSDA
DFIRCLSLNERSRYEEMKKDYTGNLEVPMMEWLGVKLNGETTRRDMRQAR
RRQQRYDEKSDVVSQVLSEHITTMIQISGTLMAEGVSIMPTTVFAFIRIA
RVLTTDVY*
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spliced messenger RNA

>Ggra2791.t1 ID=Ggra2791.t1|Name=Ggra2791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000123_pilon:172682..173308+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACTCTAACGGGCTTTGTGCTTCTACTTTCATTCGCCTGTTTCGC
TCAGAATTACCCAGCACTTCAATCTTCAGTCTTGATGAGAAAGGAACTAC
TGACGAACTCCCTGGAACACTATTCTTACAGAATGCTAAGAAACACTGGA
AACCATCGATATCCTGTGTCAAACACACAAGTGTCTTTTGAGCAACTTGT
CAGCACTGGGCTCGTGGTATCGAAAGGAAGTAGTGGGATTCTGAATTTCA
ACATCACCCTTAATGCTGTTCAAGCTTCCACTCTCGCAACCAGCGATGCA
GATTTCATACGGTGCCTTTCTCTCAACGAAAGATCCCGATACGAGGAGAT
GAAGAAGGACTACACTGGAAACCTGGAAGTCCCGATGATGGAATGGCTTG
GGGTAAAGCTAAATGGGGAGACAACTCGGAGGGATATGAGACAAGCTCGT
CGTCGGCAGCAAAGGTATGATGAAAAATCTGACGTTGTGAGTCAGGTTTT
GTCTGAGCATATAACCACTATGATTCAGATCAGCGGTACGCTCATGGCGG
AAGGCGTTAGCATTATGCCTACGACAGTGTTTGCCTTTATTCGCATTGCC
AGGGTTTTAACAActgatgtttactga
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protein sequence of Ggra2791.t1

>Ggra2791.t1 ID=Ggra2791.t1|Name=Ggra2791.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MVTLTGFVLLLSFACFAQNYPALQSSVLMRKELLTNSLEHYSYRMLRNTG
NHRYPVSNTQVSFEQLVSTGLVVSKGSSGILNFNITLNAVQASTLATSDA
DFIRCLSLNERSRYEEMKKDYTGNLEVPMMEWLGVKLNGETTRRDMRQAR
RRQQRYDEKSDVVSQVLSEHITTMIQISGTLMAEGVSIMPTTVFAFIRIA
RVLTTDVY*
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mRNA from alignment at tig00000123_pilon:172682..173308+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2791.t1 ID=Ggra2791.t1|Name=Ggra2791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000123_pilon:172682..173308+ (Gracilaria gracilis GNS1m male)
ATGGTGACTCTAACGGGCTTTGTGCTTCTACTTTCATTCGCCTGTTTCGC
TCAGAATTACCCAGCACTTCAATCTTCAGTCTTGATGAGAAAGGAACTAC
TGACGAACTCCCTGGAACACTATTCTTACAGAATGCTAAGAAACACTGGA
AACCATCGATATCCTGTGTCAAACACACAAGTGTCTTTTGAGCAACTTGT
CAGCACTGGGCTCGTGGTATCGAAAGGAAGTAGTGGGATTCTGAATTTCA
ACATCACCCTTAATGCTGTTCAAGCTTCCACTCTCGCAACCAGCGATGCA
GATTTCATACGGTGCCTTTCTCTCAACGAAAGATCCCGATACGAGGAGAT
GAAGAAGGACTACACTGGAAACCTGGAAGTCCCGATGATGGAATGGCTTG
GGGTAAAGCTAAATGGGGAGACAACTCGGAGGGATATGAGACAAGCTCGT
CGTCGGCAGCAAAGGTATGATGAAAAATCTGACGTTGTGAGTCAGGTTTT
GTCTGAGCATATAACCACTATGATTCAGATCAGCGGTACGCTCATGGCGG
AAGGCGTTAGCATTATGCCTACGACAGTGTTTGCCTTTATTCGCATTGCC
AGGGTTTTAACAActgatgtttactga
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Coding sequence (CDS) from alignment at tig00000123_pilon:172682..173308+

>Ggra2791.t1 ID=Ggra2791.t1|Name=Ggra2791.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00000123_pilon:172682..173308+ (Gracilaria gracilis GNS1m male)
ATGGTGACTCTAACGGGCTTTGTGCTTCTACTTTCATTCGCCTGTTTCGC
TCAGAATTACCCAGCACTTCAATCTTCAGTCTTGATGAGAAAGGAACTAC
TGACGAACTCCCTGGAACACTATTCTTACAGAATGCTAAGAAACACTGGA
AACCATCGATATCCTGTGTCAAACACACAAGTGTCTTTTGAGCAACTTGT
CAGCACTGGGCTCGTGGTATCGAAAGGAAGTAGTGGGATTCTGAATTTCA
ACATCACCCTTAATGCTGTTCAAGCTTCCACTCTCGCAACCAGCGATGCA
GATTTCATACGGTGCCTTTCTCTCAACGAAAGATCCCGATACGAGGAGAT
GAAGAAGGACTACACTGGAAACCTGGAAGTCCCGATGATGGAATGGCTTG
GGGTAAAGCTAAATGGGGAGACAACTCGGAGGGATATGAGACAAGCTCGT
CGTCGGCAGCAAAGGTATGATGAAAAATCTGACGTTGTGAGTCAGGTTTT
GTCTGAGCATATAACCACTATGATTCAGATCAGCGGTACGCTCATGGCGG
AAGGCGTTAGCATTATGCCTACGACAGTGTTTGCCTTTATTCGCATTGCC
AGGGTTTTAACAActgatgtttactga
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