Ggra2786.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2786.t1
Unique NameGgra2786.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:81838..82926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1150474.JQJI01000035_gene946
PFAMsCellulase
Max annot lvl200918|Thermotogae
KEGG koko:K01179
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
Evalue3.05e-90
EggNOG OGsCOG2730@1|root,COG2730@2|Bacteria,2GDQI@200918|Thermotogae
EC3.2.1.4
DescriptionBelongs to the glycosyl hydrolase 5 (cellulase A) family
COG categoryG
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2786Ggra2786Gracilaria gracilis GNS1m malegenetig00000123_pilon 81838..82926 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2786.t1.start1Ggra2786.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 81838..81840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2786.t1.CDS1Ggra2786.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 81838..82926 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2786.t1.exon1Ggra2786.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 81838..82926 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2786.t1.stop1Ggra2786.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 82924..82926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2786.t1Ggra2786.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 81838..82926 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2786.t1 ID=Ggra2786.t1|Name=Ggra2786.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp
MSIDNLRKTVDVSRGVSVALLFAYALCLVATVAGQQTYTPAQYQALLGVG
MDVDWLKTGTGRTQNWKSREQRGVDVPKVFKDRGFSHVRLRIKDYDLDAI
NTKTGVSLLEEMRRTVDDCLDSALIPVVAFQGARFKTDPTNPDEMDAVVD
WWVDVATALKDRDYLLSYNIIIETTEEIKRHNDKLNELYKRVETAVHAID
AKRILIIAPNRISSPLELDKLVVPDNDYMMVEWHFYAAGPKPNNPKKQWT
TGTEFEKSLITDKVDVAVSWSNENNIPTWVGAWMPSNFNEGGSSAPSCPP
DGGSYSIEEQVVFATFMSQTLQCSSIPYAVNSDTKYYDRKTNEWCAAMAP
VVDAIVAQYSCP*
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spliced messenger RNA

>Ggra2786.t1 ID=Ggra2786.t1|Name=Ggra2786.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000123_pilon:81838..82926+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATCGACAATCTGAGGAAGACCGTGGATGTTTCACGCGGTGTAAG
CGTTGCGCTACTTTTCGCATACGCTCTATGTTTGGTGGCTACCGTCGCTG
GACAGCAGACGTATACCCCTGCCCAGTACCAAGCACTTCTTGGCGTTGGG
ATGGACGTTGACTGGCTCAAGACCGGTACCGGACGAACTCAAAACTGGAA
ATCACGAGAGCAGAGAGGGGTTGACGTGCCCAAAGTTTTCAAGGATCGCG
GTTTCTCTCATGTTAGACTCCGCATCAAAGACTACGACCTGGATGCAATC
AATACAAAAACCGGAGTTTCTTTGCTGGAGGAGATGAGAAGGACGGTGGA
TGACTGCCTGGATTCAGCATTGATCCCAGTGGTCGCCTTTCAGGGAGCGC
GTTTCAAAACAGATCCTACAAATCCAGACGAGATGGACGCTGTCGTTGAT
TGGTGGGTCGATGTTGCAACAGCCCTGAAGGACAGGGACTATCTCTTGTC
GTACAATATCATCATTGAGACGACTGAGGAGATTAAGCGTCACAACGACA
AATTGAATGAGCTGTACAAGAGAGTTGAAACTGCTGTGCATGCCATTGAC
GCGAAGAGAATATTAATCATTGCTCCCAACAGGATTTCCAGCCCGCTGGA
GCTTGACAAACTCGTAGTCCCAGATAATGATTACATGATGGTGGAGTGGC
ATTTTTACGCAGCCGGGCCCAAGCCGAACAACCCCAAGAAACAATGGACT
ACCGGCACAGAGTTCGAGAAATCGTTGATAACGGACAAGGTGGATGTGGC
GGTGAGCTGGTCGAACGAGAATAATATCCCGACATGGGTGGGTGCATGGA
TGCCGAGCAACTTCAATGAAGGCGGTTCATCCGCTCCCAGTTGCCCGCCT
GACGGTGGCTCTTACTCGATCGAAGAACAGGTTGTGTTCGCCACGTTCAT
GAGCCAGACGTTGCAGTGCAGTAGCATTCCGTATGCGGTGAACTCGGACA
CGAAGTACTACGATCGGAAGACCAATGAGTGGTGTGCGGCCATGGCTCCC
GTAGTGGATGCTATCGTTGCGCAGTATTCTTGCCCGTGA
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protein sequence of Ggra2786.t1

>Ggra2786.t1 ID=Ggra2786.t1|Name=Ggra2786.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=363bp
MSIDNLRKTVDVSRGVSVALLFAYALCLVATVAGQQTYTPAQYQALLGVG
MDVDWLKTGTGRTQNWKSREQRGVDVPKVFKDRGFSHVRLRIKDYDLDAI
NTKTGVSLLEEMRRTVDDCLDSALIPVVAFQGARFKTDPTNPDEMDAVVD
WWVDVATALKDRDYLLSYNIIIETTEEIKRHNDKLNELYKRVETAVHAID
AKRILIIAPNRISSPLELDKLVVPDNDYMMVEWHFYAAGPKPNNPKKQWT
TGTEFEKSLITDKVDVAVSWSNENNIPTWVGAWMPSNFNEGGSSAPSCPP
DGGSYSIEEQVVFATFMSQTLQCSSIPYAVNSDTKYYDRKTNEWCAAMAP
VVDAIVAQYSCP*
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mRNA from alignment at tig00000123_pilon:81838..82926+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2786.t1 ID=Ggra2786.t1|Name=Ggra2786.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000123_pilon:81838..82926+ (Gracilaria gracilis GNS1m male)
ATGTCCATCGACAATCTGAGGAAGACCGTGGATGTTTCACGCGGTGTAAG
CGTTGCGCTACTTTTCGCATACGCTCTATGTTTGGTGGCTACCGTCGCTG
GACAGCAGACGTATACCCCTGCCCAGTACCAAGCACTTCTTGGCGTTGGG
ATGGACGTTGACTGGCTCAAGACCGGTACCGGACGAACTCAAAACTGGAA
ATCACGAGAGCAGAGAGGGGTTGACGTGCCCAAAGTTTTCAAGGATCGCG
GTTTCTCTCATGTTAGACTCCGCATCAAAGACTACGACCTGGATGCAATC
AATACAAAAACCGGAGTTTCTTTGCTGGAGGAGATGAGAAGGACGGTGGA
TGACTGCCTGGATTCAGCATTGATCCCAGTGGTCGCCTTTCAGGGAGCGC
GTTTCAAAACAGATCCTACAAATCCAGACGAGATGGACGCTGTCGTTGAT
TGGTGGGTCGATGTTGCAACAGCCCTGAAGGACAGGGACTATCTCTTGTC
GTACAATATCATCATTGAGACGACTGAGGAGATTAAGCGTCACAACGACA
AATTGAATGAGCTGTACAAGAGAGTTGAAACTGCTGTGCATGCCATTGAC
GCGAAGAGAATATTAATCATTGCTCCCAACAGGATTTCCAGCCCGCTGGA
GCTTGACAAACTCGTAGTCCCAGATAATGATTACATGATGGTGGAGTGGC
ATTTTTACGCAGCCGGGCCCAAGCCGAACAACCCCAAGAAACAATGGACT
ACCGGCACAGAGTTCGAGAAATCGTTGATAACGGACAAGGTGGATGTGGC
GGTGAGCTGGTCGAACGAGAATAATATCCCGACATGGGTGGGTGCATGGA
TGCCGAGCAACTTCAATGAAGGCGGTTCATCCGCTCCCAGTTGCCCGCCT
GACGGTGGCTCTTACTCGATCGAAGAACAGGTTGTGTTCGCCACGTTCAT
GAGCCAGACGTTGCAGTGCAGTAGCATTCCGTATGCGGTGAACTCGGACA
CGAAGTACTACGATCGGAAGACCAATGAGTGGTGTGCGGCCATGGCTCCC
GTAGTGGATGCTATCGTTGCGCAGTATTCTTGCCCGTGA
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Coding sequence (CDS) from alignment at tig00000123_pilon:81838..82926+

>Ggra2786.t1 ID=Ggra2786.t1|Name=Ggra2786.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00000123_pilon:81838..82926+ (Gracilaria gracilis GNS1m male)
ATGTCCATCGACAATCTGAGGAAGACCGTGGATGTTTCACGCGGTGTAAG
CGTTGCGCTACTTTTCGCATACGCTCTATGTTTGGTGGCTACCGTCGCTG
GACAGCAGACGTATACCCCTGCCCAGTACCAAGCACTTCTTGGCGTTGGG
ATGGACGTTGACTGGCTCAAGACCGGTACCGGACGAACTCAAAACTGGAA
ATCACGAGAGCAGAGAGGGGTTGACGTGCCCAAAGTTTTCAAGGATCGCG
GTTTCTCTCATGTTAGACTCCGCATCAAAGACTACGACCTGGATGCAATC
AATACAAAAACCGGAGTTTCTTTGCTGGAGGAGATGAGAAGGACGGTGGA
TGACTGCCTGGATTCAGCATTGATCCCAGTGGTCGCCTTTCAGGGAGCGC
GTTTCAAAACAGATCCTACAAATCCAGACGAGATGGACGCTGTCGTTGAT
TGGTGGGTCGATGTTGCAACAGCCCTGAAGGACAGGGACTATCTCTTGTC
GTACAATATCATCATTGAGACGACTGAGGAGATTAAGCGTCACAACGACA
AATTGAATGAGCTGTACAAGAGAGTTGAAACTGCTGTGCATGCCATTGAC
GCGAAGAGAATATTAATCATTGCTCCCAACAGGATTTCCAGCCCGCTGGA
GCTTGACAAACTCGTAGTCCCAGATAATGATTACATGATGGTGGAGTGGC
ATTTTTACGCAGCCGGGCCCAAGCCGAACAACCCCAAGAAACAATGGACT
ACCGGCACAGAGTTCGAGAAATCGTTGATAACGGACAAGGTGGATGTGGC
GGTGAGCTGGTCGAACGAGAATAATATCCCGACATGGGTGGGTGCATGGA
TGCCGAGCAACTTCAATGAAGGCGGTTCATCCGCTCCCAGTTGCCCGCCT
GACGGTGGCTCTTACTCGATCGAAGAACAGGTTGTGTTCGCCACGTTCAT
GAGCCAGACGTTGCAGTGCAGTAGCATTCCGTATGCGGTGAACTCGGACA
CGAAGTACTACGATCGGAAGACCAATGAGTGGTGTGCGGCCATGGCTCCC
GTAGTGGATGCTATCGTTGCGCAGTATTCTTGCCCGTGA
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