Ggra2784.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2784.t1
Unique NameGgra2784.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:27947..28861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2784Ggra2784Gracilaria gracilis GNS1m malegenetig00000123_pilon 27947..28861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2784.t1Ggra2784.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 27947..28861 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2784.t1.start1Ggra2784.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 27947..27949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2784.t1.CDS1Ggra2784.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 27947..28651 +
Ggra2784.t1.CDS2Ggra2784.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000123_pilon 28781..28861 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2784.t1.exon1Ggra2784.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 27947..28651 +
Ggra2784.t1.exon2Ggra2784.t1.exon2Gracilaria gracilis GNS1m maleexontig00000123_pilon 28781..28861 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2784.t1.intron1Ggra2784.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000123_pilon 28652..28780 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2784.t1.stop1Ggra2784.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 28859..28861 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2784.t1 ID=Ggra2784.t1|Name=Ggra2784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MVLYRNKNKVKVKGEERLPGIIRFLPAVRMLSSCLKLSANIGGSSRTALG
YRPNSQQDDQSPYETDNSFIGSRKASIAMDSPSQSRPNGTKKEKLDKVLE
RNMLKVSSSVERMTETLKGSAACKKQAASISLQLKIMHRMSLSPAAMNKR
LEELMQKAATLGRFNKTADVTELNADIHENDQSLLLGNTYSYQWETTTVS
TASANVANLAAAAPNESMSTITRPPNLSFDHQLTNMMGQRFYQISVGIFV
SDKIDCVPQAK*
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spliced messenger RNA

>Ggra2784.t1 ID=Ggra2784.t1|Name=Ggra2784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000123_pilon:27947..28861+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTCTATAGAAACAAAAACAAAGTAAAGGTGAAGGGGGAAGAACG
ACTACCTGGAATCATCCGCTTTCTGCCTGCTGTTAGGATGCTTTCGAGCT
GCCTCAAGCTTTCTGCTAATATTGGTGGAAGCTCTCGAACTGCTCTAGGA
TATCGCCCTAACTCTCAACAGGACGATCAGTCACCATATGAAACTGATAA
CTCTTTTATCGGCTCAAGAAAGGCGTCAATTGCCATGGATTCTCCTTCAC
AGTCTCGCCCAAATGGGACGAAAAAGGAGAAGCTAGACAAAGTACTAGAG
CGCAATATGTTGAAGGTCTCCAGCAGTGTAGAGAGAATGACGGAAACGTT
GAAAGGATCAGCTGCTTGCAAGAAGCAGGCGGCTTCGATATCACTGCAAT
TGAAAATAATGCATCGCATGTCCCTCTCCCCTGCCGCTATGAACAAACGG
CTTGAGGAGCTTATGCAGAAGGCAGCAACACTTGGTAGATTTAATAAGAC
AGCCGATGTGACCGAGCTTAATGCAGATATTCACGAGAACGACCAAAGCC
TTTTGCTTGGAAACACATATTCATATCAGTGGGAAACGACTACTGTGTCT
ACTGCTTCCGCCAACGTTGCCAACCTAGCTGCCGCCGCCCCGAATGAGAG
TATGAGCACAATCACCAGGCCGCCCAATTTGAGTTTCGATCACCaactca
caaatATGATGGGACAACGCTTCTATCAAATTTCTGTTGGAATCTTCGTT
AGTGACAAGATCGATTGCGTTCCGCAAGCCAAGTAA
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protein sequence of Ggra2784.t1

>Ggra2784.t1 ID=Ggra2784.t1|Name=Ggra2784.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MVLYRNKNKVKVKGEERLPGIIRFLPAVRMLSSCLKLSANIGGSSRTALG
YRPNSQQDDQSPYETDNSFIGSRKASIAMDSPSQSRPNGTKKEKLDKVLE
RNMLKVSSSVERMTETLKGSAACKKQAASISLQLKIMHRMSLSPAAMNKR
LEELMQKAATLGRFNKTADVTELNADIHENDQSLLLGNTYSYQWETTTVS
TASANVANLAAAAPNESMSTITRPPNLSFDHQLTNMMGQRFYQISVGIFV
SDKIDCVPQAK*
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mRNA from alignment at tig00000123_pilon:27947..28861+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2784.t1 ID=Ggra2784.t1|Name=Ggra2784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000123_pilon:27947..28861+ (Gracilaria gracilis GNS1m male)
ATGGTTCTCTATAGAAACAAAAACAAAGTAAAGGTGAAGGGGGAAGAACG
ACTACCTGGAATCATCCGCTTTCTGCCTGCTGTTAGGATGCTTTCGAGCT
GCCTCAAGCTTTCTGCTAATATTGGTGGAAGCTCTCGAACTGCTCTAGGA
TATCGCCCTAACTCTCAACAGGACGATCAGTCACCATATGAAACTGATAA
CTCTTTTATCGGCTCAAGAAAGGCGTCAATTGCCATGGATTCTCCTTCAC
AGTCTCGCCCAAATGGGACGAAAAAGGAGAAGCTAGACAAAGTACTAGAG
CGCAATATGTTGAAGGTCTCCAGCAGTGTAGAGAGAATGACGGAAACGTT
GAAAGGATCAGCTGCTTGCAAGAAGCAGGCGGCTTCGATATCACTGCAAT
TGAAAATAATGCATCGCATGTCCCTCTCCCCTGCCGCTATGAACAAACGG
CTTGAGGAGCTTATGCAGAAGGCAGCAACACTTGGTAGATTTAATAAGAC
AGCCGATGTGACCGAGCTTAATGCAGATATTCACGAGAACGACCAAAGCC
TTTTGCTTGGAAACACATATTCATATCAGTGGGAAACGACTACTGTGTCT
ACTGCTTCCGCCAACGTTGCCAACCTAGCTGCCGCCGCCCCGAATGAGAG
TATGAGCACAATCACCAGGCCGCCCAATTTGAGTTTCGATCACCaactca
caaatgtaagacaaaatcagaatcaaaatGTAGGTGGAGGCTGCTTGACG
TTTCTGCGTGTTGTAATTGCGGTTTAGAGGCTTCGGATGACGTGGAAACG
GTTGTTAAAGGTTCTCTCCTCTCTTTGCCCACAGATGATGGGACAACGCT
TCTATCAAATTTCTGTTGGAATCTTCGTTAGTGACAAGATCGATTGCGTT
CCGCAAGCCAAGTAA
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Coding sequence (CDS) from alignment at tig00000123_pilon:27947..28861+

>Ggra2784.t1 ID=Ggra2784.t1|Name=Ggra2784.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000123_pilon:27947..28861+ (Gracilaria gracilis GNS1m male)
ATGGTTCTCTATAGAAACAAAAACAAAGTAAAGGTGAAGGGGGAAGAACG
ACTACCTGGAATCATCCGCTTTCTGCCTGCTGTTAGGATGCTTTCGAGCT
GCCTCAAGCTTTCTGCTAATATTGGTGGAAGCTCTCGAACTGCTCTAGGA
TATCGCCCTAACTCTCAACAGGACGATCAGTCACCATATGAAACTGATAA
CTCTTTTATCGGCTCAAGAAAGGCGTCAATTGCCATGGATTCTCCTTCAC
AGTCTCGCCCAAATGGGACGAAAAAGGAGAAGCTAGACAAAGTACTAGAG
CGCAATATGTTGAAGGTCTCCAGCAGTGTAGAGAGAATGACGGAAACGTT
GAAAGGATCAGCTGCTTGCAAGAAGCAGGCGGCTTCGATATCACTGCAAT
TGAAAATAATGCATCGCATGTCCCTCTCCCCTGCCGCTATGAACAAACGG
CTTGAGGAGCTTATGCAGAAGGCAGCAACACTTGGTAGATTTAATAAGAC
AGCCGATGTGACCGAGCTTAATGCAGATATTCACGAGAACGACCAAAGCC
TTTTGCTTGGAAACACATATTCATATCAGTGGGAAACGACTACTGTGTCT
ACTGCTTCCGCCAACGTTGCCAACCTAGCTGCCGCCGCCCCGAATGAGAG
TATGAGCACAATCACCAGGCCGCCCAATTTGAGTTTCGATCACCaactca
caaatATGATGGGACAACGCTTCTATCAAATTTCTGTTGGAATCTTCGTT
AGTGACAAGATCGATTGCGTTCCGCAAGCCAAGTAA
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