Ggra2781.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2781.t1
Unique NameGgra2781.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1526475..1527083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2781Ggra2781Gracilaria gracilis GNS1m malegenetig00000005_pilon 1526475..1527083 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2781.t1.start1Ggra2781.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1526475..1526477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2781.t1.CDS1Ggra2781.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1526475..1527083 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2781.t1.exon1Ggra2781.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1526475..1527083 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2781.t1.stop1Ggra2781.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1527081..1527083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2781.t1Ggra2781.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1526475..1527083 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2781.t1 ID=Ggra2781.t1|Name=Ggra2781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=203bp
MFFSCCTENRKDDLKIVQSFIKDGAAAGQKVKESVSQKICGVGQKMLDRW
LDAEDSQIAQSWMEVELEDLVTRFGPTASVDEEDVTTEVSDFCTARNVHL
PSAGCIMELLAPIQSVIDECESGRANSILYQLKQELARVRASQDQEREQV
VRSLDVPSHLRTTDQVESARPPAPVQPSSRPEESNAPLHAHGDSGDVSGA
LS*
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spliced messenger RNA

>Ggra2781.t1 ID=Ggra2781.t1|Name=Ggra2781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000005_pilon:1526475..1527083+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTTTTCATGCTGTACAGAAAACCGGAAAGACGATTTGAAGATAGT
TCAGTCGTTTATCAAAGACGGCGCGGCGGCAGGACAGAAGGTAAAGGAGT
CTGTGTCGCAGAAGATTTGCGGTGTCGGACAGAAGATGCTCGATAGATGG
CTAGATGCTGAAGATTCTCAGATTGCACAAAGCTGGATGGAGGTGGAACT
TGAAGACCTTGTAACTCGTTTCGGACCAACTGCTTCAGTTGACGAGGAAG
ACGTGACGACTGAAGTATCAGATTTCTGCACCGCTCGAAATGTGCACTTA
CCCAGCGCCGGATGCATCATGGAATTGCTTGCACCCATTCAGAGTGTTAT
AGATGAATGCGAGAGCGGGCGAGCAAACTCCATACTGTATCAGCTGAAGC
AAGAACTCGCACGTGTTCGTGCCTCACAAGATCAAGAACGCGAACAGGTT
GTGAGGTCATTGGATGTGCCCTCACATCTACGGACTACAGATCAAGTGGA
GAGCGCACGTCCCCCCGCGCCTGTGCAGCCAAGCTCTCGTCCAGAAGAAT
CTAACGCGCCTCTGCATGCGCATGGAGACTCCGGTGATGTTTCCGGAGCG
CTCTCATAA
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protein sequence of Ggra2781.t1

>Ggra2781.t1 ID=Ggra2781.t1|Name=Ggra2781.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=203bp
MFFSCCTENRKDDLKIVQSFIKDGAAAGQKVKESVSQKICGVGQKMLDRW
LDAEDSQIAQSWMEVELEDLVTRFGPTASVDEEDVTTEVSDFCTARNVHL
PSAGCIMELLAPIQSVIDECESGRANSILYQLKQELARVRASQDQEREQV
VRSLDVPSHLRTTDQVESARPPAPVQPSSRPEESNAPLHAHGDSGDVSGA
LS*
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mRNA from alignment at tig00000005_pilon:1526475..1527083+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2781.t1 ID=Ggra2781.t1|Name=Ggra2781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000005_pilon:1526475..1527083+ (Gracilaria gracilis GNS1m male)
ATGTTCTTTTCATGCTGTACAGAAAACCGGAAAGACGATTTGAAGATAGT
TCAGTCGTTTATCAAAGACGGCGCGGCGGCAGGACAGAAGGTAAAGGAGT
CTGTGTCGCAGAAGATTTGCGGTGTCGGACAGAAGATGCTCGATAGATGG
CTAGATGCTGAAGATTCTCAGATTGCACAAAGCTGGATGGAGGTGGAACT
TGAAGACCTTGTAACTCGTTTCGGACCAACTGCTTCAGTTGACGAGGAAG
ACGTGACGACTGAAGTATCAGATTTCTGCACCGCTCGAAATGTGCACTTA
CCCAGCGCCGGATGCATCATGGAATTGCTTGCACCCATTCAGAGTGTTAT
AGATGAATGCGAGAGCGGGCGAGCAAACTCCATACTGTATCAGCTGAAGC
AAGAACTCGCACGTGTTCGTGCCTCACAAGATCAAGAACGCGAACAGGTT
GTGAGGTCATTGGATGTGCCCTCACATCTACGGACTACAGATCAAGTGGA
GAGCGCACGTCCCCCCGCGCCTGTGCAGCCAAGCTCTCGTCCAGAAGAAT
CTAACGCGCCTCTGCATGCGCATGGAGACTCCGGTGATGTTTCCGGAGCG
CTCTCATAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1526475..1527083+

>Ggra2781.t1 ID=Ggra2781.t1|Name=Ggra2781.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00000005_pilon:1526475..1527083+ (Gracilaria gracilis GNS1m male)
ATGTTCTTTTCATGCTGTACAGAAAACCGGAAAGACGATTTGAAGATAGT
TCAGTCGTTTATCAAAGACGGCGCGGCGGCAGGACAGAAGGTAAAGGAGT
CTGTGTCGCAGAAGATTTGCGGTGTCGGACAGAAGATGCTCGATAGATGG
CTAGATGCTGAAGATTCTCAGATTGCACAAAGCTGGATGGAGGTGGAACT
TGAAGACCTTGTAACTCGTTTCGGACCAACTGCTTCAGTTGACGAGGAAG
ACGTGACGACTGAAGTATCAGATTTCTGCACCGCTCGAAATGTGCACTTA
CCCAGCGCCGGATGCATCATGGAATTGCTTGCACCCATTCAGAGTGTTAT
AGATGAATGCGAGAGCGGGCGAGCAAACTCCATACTGTATCAGCTGAAGC
AAGAACTCGCACGTGTTCGTGCCTCACAAGATCAAGAACGCGAACAGGTT
GTGAGGTCATTGGATGTGCCCTCACATCTACGGACTACAGATCAAGTGGA
GAGCGCACGTCCCCCCGCGCCTGTGCAGCCAAGCTCTCGTCCAGAAGAAT
CTAACGCGCCTCTGCATGCGCATGGAGACTCCGGTGATGTTTCCGGAGCG
CTCTCATAA
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