Ggra2777.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2777.t1
Unique Name	Ggra2777.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	587

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:1515347..1517107 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2777	Ggra2777	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 1515347..1517107 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2777.t1.stop1	Ggra2777.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 1515347..1515349 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2777.t1.CDS1	Ggra2777.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 1515347..1517107 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2777.t1.exon1	Ggra2777.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 1515347..1517107 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2777.t1.start1	Ggra2777.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 1517105..1517107 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2777.t1	Ggra2777.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 1515347..1517107 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:1515347..1517107-
coding sequence from alignment at tig00000005_pilon:1515347..1517107-

mRNA sequence

>Ggra2777.t1 ID=Ggra2777.t1|Name=Ggra2777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp
MSQQFDEAPPLPREPTALNVPAVMRPSVQEPDPLPSSSVPPPPKFPSLTD
VGISSAQAAAANLSASAATTTTTTTTTTASTVEPVVTDQISTTDQPEQTP
FALPVSPDDIRAAIERDSVTPGSGAKKAVEVGHSIWTDQDQQTLDRLLKE
GQAVYVPPDVGSKDLLVSRASAYVYVPVPAEGVDDFDQDNFVSARVNAWN
QVVSKQEDELPAVAPVAAAAAVGTVGTGVAAAAISSAAAEDTQASSVTDD
RGVSTQSAPVSSTSVTDTAKEAAVVDQSAEASAAAMEETSPQLEGESATK
TVEPVERAAPISSQPKSFDASKSIFASSFITVPVKSHAPAVDTATMKSDS
PESEQLGKPTQVKLRDDATANITILEDYGLKGGHELKVNDAAFIDGSTLI
TCGSDGKVCIWDVKAKHVRSEFIPYGGQSVAMIYPIPDDDPSQPLTLMTF
SEHREMRIWTVDSTQAVLLRTTTIPHSDKDLYMSIPSISKELKARAAAAV
AAAAVTTTEIPQVETTEGATDAPPAPSPPAQSKPDEEEKSAAQDAADGQA
GAPEPEEIEEEKERKRFSLTKVLSFGRSGGRKAVAS*

spliced messenger RNA

>Ggra2777.t1 ID=Ggra2777.t1|Name=Ggra2777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000005_pilon:1515347..1517107- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAGCAGTTCGACGAGGCGCCGCCGCTTCCACGTGAGCCTACCGC
GCTCAATGTGCCGGCTGTCATGCGCCCATCCGTCCAAGAACCCGACCCGC
TTCCTTCCTCTTCCGTGCCTCCGCCGCCTAAATTCCCCTCCTTAACTGAC
GTCGGCATATCGTCCGCGCAAGCCGCTGCTGCCAATTTGTCCGCGTCTGC
TGCCACCACCACCACCACCACCACCACCACTACCGCCTCAACCGTTGAGC
CCGTTGTCACAGATCAAATTTCAACCACCGACCAACCTGAGCAAACTCCT
TTCGCTCTCCCGGTCAGTCCCGACGACATTCGCGCCGCCATCGAACGAGA
TTCCGTCACCCCCGGCTCGGGCGCCAAGAAAGCCGTCGAGGTTGGTCATA
GCATATGGACCGACCAGGACCAACAGACGCTCGACAGGCTCCTCAAGGAG
GGACAAGCCGTGTATGTACCGCCCGATGTGGGCAGCAAGGATCTACTTGT
ATCGCGTGCCTCTGCTTATGTATATGTGCCGGTACCCGCTGAGGGTGTGG
ATGATTTCGATCAAGATAATTTCGTTTCAGCTCGTGTCAATGCGTGGAAT
CAAGTCGTTTCAAAACAAGAAGATGAATTGCCTGCTGTTGCGCCCGTTGC
TGCGGCCGCTGCCGTTGGTACCGTTGGTACAGGTGTTGCTGCTGCCGCTA
TTTCTTCCGCGGCCGCTGAAGATACACAAGCATCGTCTGTTACCGATGAT
CGTGGCGTGTCTACTCAATCTGCGCCCGTGTCTTCTACCAGTGTCACCGA
CACTGCGAAAGAAGCCGCGGTAGTTGACCAATCGGCCGAAGCGTCTGCTG
CTGCGATGGAGGAGACTTCACCACAACTTGAGGGAGAAAGTGCTACCAAA
ACTGTCGAACCTGTTGAACGTGCGGCGCCTATCTCTTCACAACCGAAGAG
CTTTGACGCTTCTAAAAGTATCTTTGCGAGCAGCTTTATCACCGTGCCGG
TCAAGTCGCATGCGCCTGCGGTGGACACTGCTACCATGAAGAGTGACTCT
CCTGAATCTGAGCAACTTGGAAAACCAACCCAAGTTAAACTGCGTGATGA
TGCTACAGCCAATATTACAATTCTTGAAGATTATGGTCTGAAAGGTGGAC
ATGAGCTAAAGGTGAATGACGCCGCCTTCATTGATGGTAGTACTCTGATT
ACTTGTGGAAGTGATGGCAAGGTCTGCATCTGGGACGTTAAGGCGAAGCA
CGTTCGCAGCGAATTCATACCATATGGCGGCCAATCCGTTGCTATGATTT
ACCCAATACCGGATGATGATCCGTCGCAGCCGCTTACGCTCATGACATTT
TCGGAACATAGAGAAATGAGAATTTGGACCGTGGATTCTACGCAGGCCGT
ATTGCTTCGAACCACAACTATTCCACACAGTGACAAAGACCTGTACATGA
GTATTCCTTCTATTTCAAAGGAACTGAAGGCAAGAGCTGCCGCTGCCGTT
GCTGCGGCTGCTGTTACCACCACGGAGATTCCACAGGTGGAAACCACTGA
GGGTGCTACTGATGCTCCTCCGGCCCCATCTCCACCTGCACAAAGCAAGC
CCGATGAAGAAGAAAAATCTGCAGCGCAGGATGCTGCCGATGGTCAAGCC
GGTGCGCCTGAACCAGAGGAAATAGAAGAGGAGAAGGAGAGAAAGAGATT
TTCACTTACCAAGGTTCTTAGCTTTGGTCGCAGTGGTGGCAGAAAGGCTG
TAGCGAGCTAG

protein sequence of Ggra2777.t1

>Ggra2777.t1 ID=Ggra2777.t1|Name=Ggra2777.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MSQQFDEAPPLPREPTALNVPAVMRPSVQEPDPLPSSSVPPPPKFPSLTD
VGISSAQAAAANLSASAATTTTTTTTTTASTVEPVVTDQISTTDQPEQTP
FALPVSPDDIRAAIERDSVTPGSGAKKAVEVGHSIWTDQDQQTLDRLLKE
GQAVYVPPDVGSKDLLVSRASAYVYVPVPAEGVDDFDQDNFVSARVNAWN
QVVSKQEDELPAVAPVAAAAAVGTVGTGVAAAAISSAAAEDTQASSVTDD
RGVSTQSAPVSSTSVTDTAKEAAVVDQSAEASAAAMEETSPQLEGESATK
TVEPVERAAPISSQPKSFDASKSIFASSFITVPVKSHAPAVDTATMKSDS
PESEQLGKPTQVKLRDDATANITILEDYGLKGGHELKVNDAAFIDGSTLI
TCGSDGKVCIWDVKAKHVRSEFIPYGGQSVAMIYPIPDDDPSQPLTLMTF
SEHREMRIWTVDSTQAVLLRTTTIPHSDKDLYMSIPSISKELKARAAAAV
AAAAVTTTEIPQVETTEGATDAPPAPSPPAQSKPDEEEKSAAQDAADGQA
GAPEPEEIEEEKERKRFSLTKVLSFGRSGGRKAVAS*

mRNA from alignment at tig00000005_pilon:1515347..1517107-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2777.t1 ID=Ggra2777.t1|Name=Ggra2777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000005_pilon:1515347..1517107- (Gracilaria gracilis GNS1m male)
ATGTCGCAGCAGTTCGACGAGGCGCCGCCGCTTCCACGTGAGCCTACCGC
GCTCAATGTGCCGGCTGTCATGCGCCCATCCGTCCAAGAACCCGACCCGC
TTCCTTCCTCTTCCGTGCCTCCGCCGCCTAAATTCCCCTCCTTAACTGAC
GTCGGCATATCGTCCGCGCAAGCCGCTGCTGCCAATTTGTCCGCGTCTGC
TGCCACCACCACCACCACCACCACCACCACTACCGCCTCAACCGTTGAGC
CCGTTGTCACAGATCAAATTTCAACCACCGACCAACCTGAGCAAACTCCT
TTCGCTCTCCCGGTCAGTCCCGACGACATTCGCGCCGCCATCGAACGAGA
TTCCGTCACCCCCGGCTCGGGCGCCAAGAAAGCCGTCGAGGTTGGTCATA
GCATATGGACCGACCAGGACCAACAGACGCTCGACAGGCTCCTCAAGGAG
GGACAAGCCGTGTATGTACCGCCCGATGTGGGCAGCAAGGATCTACTTGT
ATCGCGTGCCTCTGCTTATGTATATGTGCCGGTACCCGCTGAGGGTGTGG
ATGATTTCGATCAAGATAATTTCGTTTCAGCTCGTGTCAATGCGTGGAAT
CAAGTCGTTTCAAAACAAGAAGATGAATTGCCTGCTGTTGCGCCCGTTGC
TGCGGCCGCTGCCGTTGGTACCGTTGGTACAGGTGTTGCTGCTGCCGCTA
TTTCTTCCGCGGCCGCTGAAGATACACAAGCATCGTCTGTTACCGATGAT
CGTGGCGTGTCTACTCAATCTGCGCCCGTGTCTTCTACCAGTGTCACCGA
CACTGCGAAAGAAGCCGCGGTAGTTGACCAATCGGCCGAAGCGTCTGCTG
CTGCGATGGAGGAGACTTCACCACAACTTGAGGGAGAAAGTGCTACCAAA
ACTGTCGAACCTGTTGAACGTGCGGCGCCTATCTCTTCACAACCGAAGAG
CTTTGACGCTTCTAAAAGTATCTTTGCGAGCAGCTTTATCACCGTGCCGG
TCAAGTCGCATGCGCCTGCGGTGGACACTGCTACCATGAAGAGTGACTCT
CCTGAATCTGAGCAACTTGGAAAACCAACCCAAGTTAAACTGCGTGATGA
TGCTACAGCCAATATTACAATTCTTGAAGATTATGGTCTGAAAGGTGGAC
ATGAGCTAAAGGTGAATGACGCCGCCTTCATTGATGGTAGTACTCTGATT
ACTTGTGGAAGTGATGGCAAGGTCTGCATCTGGGACGTTAAGGCGAAGCA
CGTTCGCAGCGAATTCATACCATATGGCGGCCAATCCGTTGCTATGATTT
ACCCAATACCGGATGATGATCCGTCGCAGCCGCTTACGCTCATGACATTT
TCGGAACATAGAGAAATGAGAATTTGGACCGTGGATTCTACGCAGGCCGT
ATTGCTTCGAACCACAACTATTCCACACAGTGACAAAGACCTGTACATGA
GTATTCCTTCTATTTCAAAGGAACTGAAGGCAAGAGCTGCCGCTGCCGTT
GCTGCGGCTGCTGTTACCACCACGGAGATTCCACAGGTGGAAACCACTGA
GGGTGCTACTGATGCTCCTCCGGCCCCATCTCCACCTGCACAAAGCAAGC
CCGATGAAGAAGAAAAATCTGCAGCGCAGGATGCTGCCGATGGTCAAGCC
GGTGCGCCTGAACCAGAGGAAATAGAAGAGGAGAAGGAGAGAAAGAGATT
TTCACTTACCAAGGTTCTTAGCTTTGGTCGCAGTGGTGGCAGAAAGGCTG
TAGCGAGCTAG

Coding sequence (CDS) from alignment at tig00000005_pilon:1515347..1517107-

>Ggra2777.t1 ID=Ggra2777.t1|Name=Ggra2777.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1761bp|location=Sequence derived from alignment at tig00000005_pilon:1515347..1517107- (Gracilaria gracilis GNS1m male)
ATGTCGCAGCAGTTCGACGAGGCGCCGCCGCTTCCACGTGAGCCTACCGC
GCTCAATGTGCCGGCTGTCATGCGCCCATCCGTCCAAGAACCCGACCCGC
TTCCTTCCTCTTCCGTGCCTCCGCCGCCTAAATTCCCCTCCTTAACTGAC
GTCGGCATATCGTCCGCGCAAGCCGCTGCTGCCAATTTGTCCGCGTCTGC
TGCCACCACCACCACCACCACCACCACCACTACCGCCTCAACCGTTGAGC
CCGTTGTCACAGATCAAATTTCAACCACCGACCAACCTGAGCAAACTCCT
TTCGCTCTCCCGGTCAGTCCCGACGACATTCGCGCCGCCATCGAACGAGA
TTCCGTCACCCCCGGCTCGGGCGCCAAGAAAGCCGTCGAGGTTGGTCATA
GCATATGGACCGACCAGGACCAACAGACGCTCGACAGGCTCCTCAAGGAG
GGACAAGCCGTGTATGTACCGCCCGATGTGGGCAGCAAGGATCTACTTGT
ATCGCGTGCCTCTGCTTATGTATATGTGCCGGTACCCGCTGAGGGTGTGG
ATGATTTCGATCAAGATAATTTCGTTTCAGCTCGTGTCAATGCGTGGAAT
CAAGTCGTTTCAAAACAAGAAGATGAATTGCCTGCTGTTGCGCCCGTTGC
TGCGGCCGCTGCCGTTGGTACCGTTGGTACAGGTGTTGCTGCTGCCGCTA
TTTCTTCCGCGGCCGCTGAAGATACACAAGCATCGTCTGTTACCGATGAT
CGTGGCGTGTCTACTCAATCTGCGCCCGTGTCTTCTACCAGTGTCACCGA
CACTGCGAAAGAAGCCGCGGTAGTTGACCAATCGGCCGAAGCGTCTGCTG
CTGCGATGGAGGAGACTTCACCACAACTTGAGGGAGAAAGTGCTACCAAA
ACTGTCGAACCTGTTGAACGTGCGGCGCCTATCTCTTCACAACCGAAGAG
CTTTGACGCTTCTAAAAGTATCTTTGCGAGCAGCTTTATCACCGTGCCGG
TCAAGTCGCATGCGCCTGCGGTGGACACTGCTACCATGAAGAGTGACTCT
CCTGAATCTGAGCAACTTGGAAAACCAACCCAAGTTAAACTGCGTGATGA
TGCTACAGCCAATATTACAATTCTTGAAGATTATGGTCTGAAAGGTGGAC
ATGAGCTAAAGGTGAATGACGCCGCCTTCATTGATGGTAGTACTCTGATT
ACTTGTGGAAGTGATGGCAAGGTCTGCATCTGGGACGTTAAGGCGAAGCA
CGTTCGCAGCGAATTCATACCATATGGCGGCCAATCCGTTGCTATGATTT
ACCCAATACCGGATGATGATCCGTCGCAGCCGCTTACGCTCATGACATTT
TCGGAACATAGAGAAATGAGAATTTGGACCGTGGATTCTACGCAGGCCGT
ATTGCTTCGAACCACAACTATTCCACACAGTGACAAAGACCTGTACATGA
GTATTCCTTCTATTTCAAAGGAACTGAAGGCAAGAGCTGCCGCTGCCGTT
GCTGCGGCTGCTGTTACCACCACGGAGATTCCACAGGTGGAAACCACTGA
GGGTGCTACTGATGCTCCTCCGGCCCCATCTCCACCTGCACAAAGCAAGC
CCGATGAAGAAGAAAAATCTGCAGCGCAGGATGCTGCCGATGGTCAAGCC
GGTGCGCCTGAACCAGAGGAAATAGAAGAGGAGAAGGAGAGAAAGAGATT
TTCACTTACCAAGGTTCTTAGCTTTGGTCGCAGTGGTGGCAGAAAGGCTG
TAGCGAGCTAG