Ggra2776.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2776.t1
Unique NameGgra2776.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1513610..1514725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog179408.Osc7112_1654
Preferred nameleuB
PFAMsIso_dh
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00084,RC00417,RC03036
KEGG koko:K00052
KEGG ReactionR00994,R04426,R10052
KEGG Pathwayko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230
KEGG ModuleM00432,M00535
GOsGO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.42e-173
EggNOG OGsCOG0473@1|root,COG0473@2|Bacteria,1G2E4@1117|Cyanobacteria,1H820@1150|Oscillatoriales
EC1.1.1.85
DescriptionCatalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
COG categoryCE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2776Ggra2776Gracilaria gracilis GNS1m malegenetig00000005_pilon 1513610..1514725 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2776.t1.start1Ggra2776.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1513610..1513612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2776.t1.CDS1Ggra2776.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1513610..1514725 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2776.t1.exon1Ggra2776.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1513610..1514725 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2776.t1.stop1Ggra2776.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1514723..1514725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2776.t1Ggra2776.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1513610..1514725 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2776.t1 ID=Ggra2776.t1|Name=Ggra2776.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MASVRKNSYNITLLPGDGIGPEITAVAVDVLNCAGTQHNVSFHFEQADIG
GEAIDLFGVPLPDATMSKCLQADSILLACIGGYKWDKLPREVRPETGLLK
LRKELGLFANLRPAIVLPQLVQSSSLKPEVVSGVDIMVVRELTGDVYFGT
PKGLHIDPYTGRRVGYNNMIYHEHEIERIARVAYTTAQKRGKRLVSVDKA
NVLDVSQLWREVLTELSADYSDVELSHMYVDNAAMQMIRWPKQFDTIVTG
NIFGDILSDAASMLVGSLGMLPSASLGDGSGPGVFEPVHGSAPDIAGQDK
ANPLACVLSAAMMARYDLDRPDVADTIEKAVNDTLDAGFRTGDIMSDGMT
LVGCKAMGRALLDRMHVKVVV*
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spliced messenger RNA

>Ggra2776.t1 ID=Ggra2776.t1|Name=Ggra2776.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000005_pilon:1513610..1514725+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTGTGCGTAAAAACTCCTACAACATCACCCTTCTTCCGGGCGA
TGGTATTGGGCCTGAGATTACTGCTGTCGCCGTTGATGTACTCAACTGTG
CGGGAACGCAGCATAATGTCTCCTTCCATTTTGAGCAAGCGGATATCGGT
GGCGAGGCAATCGATCTTTTCGGTGTACCGCTGCCGGATGCCACCATGAG
CAAATGCCTTCAAGCCGATTCTATTCTACTCGCATGCATTGGTGGTTACA
AATGGGATAAGCTTCCCCGCGAAGTGCGCCCGGAGACTGGTTTGCTCAAG
TTACGAAAAGAGCTTGGATTGTTTGCCAACCTGCGCCCTGCTATCGTTTT
GCCGCAGTTGGTGCAGTCAAGTTCTCTCAAGCCTGAAGTTGTGTCAGGCG
TTGACATCATGGTCGTTCGCGAACTTACCGGAGACGTTTACTTTGGAACT
CCAAAGGGCTTGCATATCGATCCATACACTGGCAGGCGTGTTGGATACAA
TAACATGATCTACCACGAGCACGAAATCGAACGAATTGCAAGAGTAGCCT
ATACCACCGCGCAGAAGAGGGGTAAGCGTTTGGTGTCCGTTGACAAAGCC
AATGTGTTGGATGTGTCTCAGCTTTGGCGTGAAGTGCTCACCGAGCTTTC
TGCAGACTATTCCGACGTTGAACTGTCTCATATGTATGTTGATAACGCGG
CGATGCAAATGATCCGCTGGCCGAAGCAATTCGATACCATTGTAACGGGA
AATATATTTGGCGATATCCTATCGGATGCGGCGTCAATGCTCGTGGGTTC
GCTGGGAATGCTACCCAGCGCCAGTCTTGGCGATGGCTCGGGTCCGGGAG
TTTTCGAACCTGTGCATGGATCTGCGCCTGATATCGCCGGACAAGATAAA
GCCAATCCGCTTGCTTGTGTGTTATCAGCCGCAATGATGGCTCGTTACGA
TCTGGATCGTCCTGATGTTGCTGACACCATTGAAAAGGCTGTGAACGATA
CATTGGATGCTGGTTTTAGAACTGGGGACATAATGTCTGACGGTATGACT
TTGGTTGGTTGCAAAGCAATGGGACGCGCTCTTTTAGATAGAATGCATGT
CAAAGTTGTCGTGTGA
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protein sequence of Ggra2776.t1

>Ggra2776.t1 ID=Ggra2776.t1|Name=Ggra2776.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MASVRKNSYNITLLPGDGIGPEITAVAVDVLNCAGTQHNVSFHFEQADIG
GEAIDLFGVPLPDATMSKCLQADSILLACIGGYKWDKLPREVRPETGLLK
LRKELGLFANLRPAIVLPQLVQSSSLKPEVVSGVDIMVVRELTGDVYFGT
PKGLHIDPYTGRRVGYNNMIYHEHEIERIARVAYTTAQKRGKRLVSVDKA
NVLDVSQLWREVLTELSADYSDVELSHMYVDNAAMQMIRWPKQFDTIVTG
NIFGDILSDAASMLVGSLGMLPSASLGDGSGPGVFEPVHGSAPDIAGQDK
ANPLACVLSAAMMARYDLDRPDVADTIEKAVNDTLDAGFRTGDIMSDGMT
LVGCKAMGRALLDRMHVKVVV*
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mRNA from alignment at tig00000005_pilon:1513610..1514725+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2776.t1 ID=Ggra2776.t1|Name=Ggra2776.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000005_pilon:1513610..1514725+ (Gracilaria gracilis GNS1m male)
ATGGCCTCTGTGCGTAAAAACTCCTACAACATCACCCTTCTTCCGGGCGA
TGGTATTGGGCCTGAGATTACTGCTGTCGCCGTTGATGTACTCAACTGTG
CGGGAACGCAGCATAATGTCTCCTTCCATTTTGAGCAAGCGGATATCGGT
GGCGAGGCAATCGATCTTTTCGGTGTACCGCTGCCGGATGCCACCATGAG
CAAATGCCTTCAAGCCGATTCTATTCTACTCGCATGCATTGGTGGTTACA
AATGGGATAAGCTTCCCCGCGAAGTGCGCCCGGAGACTGGTTTGCTCAAG
TTACGAAAAGAGCTTGGATTGTTTGCCAACCTGCGCCCTGCTATCGTTTT
GCCGCAGTTGGTGCAGTCAAGTTCTCTCAAGCCTGAAGTTGTGTCAGGCG
TTGACATCATGGTCGTTCGCGAACTTACCGGAGACGTTTACTTTGGAACT
CCAAAGGGCTTGCATATCGATCCATACACTGGCAGGCGTGTTGGATACAA
TAACATGATCTACCACGAGCACGAAATCGAACGAATTGCAAGAGTAGCCT
ATACCACCGCGCAGAAGAGGGGTAAGCGTTTGGTGTCCGTTGACAAAGCC
AATGTGTTGGATGTGTCTCAGCTTTGGCGTGAAGTGCTCACCGAGCTTTC
TGCAGACTATTCCGACGTTGAACTGTCTCATATGTATGTTGATAACGCGG
CGATGCAAATGATCCGCTGGCCGAAGCAATTCGATACCATTGTAACGGGA
AATATATTTGGCGATATCCTATCGGATGCGGCGTCAATGCTCGTGGGTTC
GCTGGGAATGCTACCCAGCGCCAGTCTTGGCGATGGCTCGGGTCCGGGAG
TTTTCGAACCTGTGCATGGATCTGCGCCTGATATCGCCGGACAAGATAAA
GCCAATCCGCTTGCTTGTGTGTTATCAGCCGCAATGATGGCTCGTTACGA
TCTGGATCGTCCTGATGTTGCTGACACCATTGAAAAGGCTGTGAACGATA
CATTGGATGCTGGTTTTAGAACTGGGGACATAATGTCTGACGGTATGACT
TTGGTTGGTTGCAAAGCAATGGGACGCGCTCTTTTAGATAGAATGCATGT
CAAAGTTGTCGTGTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1513610..1514725+

>Ggra2776.t1 ID=Ggra2776.t1|Name=Ggra2776.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000005_pilon:1513610..1514725+ (Gracilaria gracilis GNS1m male)
ATGGCCTCTGTGCGTAAAAACTCCTACAACATCACCCTTCTTCCGGGCGA
TGGTATTGGGCCTGAGATTACTGCTGTCGCCGTTGATGTACTCAACTGTG
CGGGAACGCAGCATAATGTCTCCTTCCATTTTGAGCAAGCGGATATCGGT
GGCGAGGCAATCGATCTTTTCGGTGTACCGCTGCCGGATGCCACCATGAG
CAAATGCCTTCAAGCCGATTCTATTCTACTCGCATGCATTGGTGGTTACA
AATGGGATAAGCTTCCCCGCGAAGTGCGCCCGGAGACTGGTTTGCTCAAG
TTACGAAAAGAGCTTGGATTGTTTGCCAACCTGCGCCCTGCTATCGTTTT
GCCGCAGTTGGTGCAGTCAAGTTCTCTCAAGCCTGAAGTTGTGTCAGGCG
TTGACATCATGGTCGTTCGCGAACTTACCGGAGACGTTTACTTTGGAACT
CCAAAGGGCTTGCATATCGATCCATACACTGGCAGGCGTGTTGGATACAA
TAACATGATCTACCACGAGCACGAAATCGAACGAATTGCAAGAGTAGCCT
ATACCACCGCGCAGAAGAGGGGTAAGCGTTTGGTGTCCGTTGACAAAGCC
AATGTGTTGGATGTGTCTCAGCTTTGGCGTGAAGTGCTCACCGAGCTTTC
TGCAGACTATTCCGACGTTGAACTGTCTCATATGTATGTTGATAACGCGG
CGATGCAAATGATCCGCTGGCCGAAGCAATTCGATACCATTGTAACGGGA
AATATATTTGGCGATATCCTATCGGATGCGGCGTCAATGCTCGTGGGTTC
GCTGGGAATGCTACCCAGCGCCAGTCTTGGCGATGGCTCGGGTCCGGGAG
TTTTCGAACCTGTGCATGGATCTGCGCCTGATATCGCCGGACAAGATAAA
GCCAATCCGCTTGCTTGTGTGTTATCAGCCGCAATGATGGCTCGTTACGA
TCTGGATCGTCCTGATGTTGCTGACACCATTGAAAAGGCTGTGAACGATA
CATTGGATGCTGGTTTTAGAACTGGGGACATAATGTCTGACGGTATGACT
TTGGTTGGTTGCAAAGCAATGGGACGCGCTCTTTTAGATAGAATGCATGT
CAAAGTTGTCGTGTGA
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