Ggra2775.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2775.t1
Unique NameGgra2775.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1510094..1511385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2775Ggra2775Gracilaria gracilis GNS1m malegenetig00000005_pilon 1510094..1511385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2775.t1Ggra2775.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1510094..1511385 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2775.t1.stop1Ggra2775.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1510094..1510096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2775.t1.CDS1Ggra2775.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1510094..1510120 -
Ggra2775.t1.CDS2Ggra2775.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1510249..1510584 -
Ggra2775.t1.CDS3Ggra2775.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1510852..1511385 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2775.t1.exon1Ggra2775.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1510094..1510120 -
Ggra2775.t1.exon2Ggra2775.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 1510249..1510584 -
Ggra2775.t1.exon3Ggra2775.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 1510852..1511385 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2775.t1.intron1Ggra2775.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1510121..1510248 -
Ggra2775.t1.intron2Ggra2775.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1510585..1510851 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2775.t1.start1Ggra2775.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1511383..1511385 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2775.t1 ID=Ggra2775.t1|Name=Ggra2775.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=299bp
MLNELTQVQPVRHATSAPSQLQPPTNHHPSFLAQYSYAPQHFQSTEPHLP
RHNAAPLRATFQHQQQHQSSQHQPYSSAPVLNRPLHLTHNSVLPPPATSF
TSKHQHVAPSHHLTAASIPDLVRPSPPLAPSAPHLPHPHTSLPPTSVRPS
RTLSQHAALSQHSLPPHHKQQRSILQSPHASLLHPAPTSHNPVPLPALTS
ANFKQPIDVDVAEDIINLSAIPSSTRQDMHTFPPAPFSNEHLQHQHDQSV
MAMDPFLPETEQDQLTINVPLPMPLSLDRTVLPTSEPEPTSRFHAPWF*
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spliced messenger RNA

>Ggra2775.t1 ID=Ggra2775.t1|Name=Ggra2775.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000005_pilon:1510094..1511385- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACGAACTCACCCAAGTGCAGCCGGTAAGGCACGCTACCTCAGC
TCCCTCCCAATTACAACCACCCACAAACCATCACCCCTCCTTTCTCGCCC
AGTACTCGTATGCACCGCAGCACTTTCAATCCACCGAACCGCACCTTCCT
CGTCACAATGCCGCGCCCTTGCGAGCTACTTTCCAACACCAACAACAGCA
CCAATCCTCGCAACACCAGCCTTATTCCTCTGCTCCTGTTTTGAACCGCC
CTCTACATCTCACCCACAATTCTGTACTTCCTCCACCGGCTACGTCCTTC
ACGTCCAAGCATCAACATGTTGCACCATCCCATCATCTTACAGCTGCTTC
TATTCCGGATCTCGTGCGTCCTTCGCCTCCGTTGGCCCCTTCTGCCCCGC
ATCTCCCACATCCTCATACTTCTCTTCCACCCACCTCGGTGCGTCCGTCG
CGAACCTTATCTCAACATGCTGCGCTTTCACAACATTCTTTACCGCCGCA
CCACAAGCAACAACGTTCTATTCTTCAATCACCGCACGCTTCATTGCTCC
ACCCAGCCCCAACCTCTCATAATCCCGTCCCGCTGCCGGCGCTCACTTCC
GCCAACTTTAAGCAACCGATCGATGTCGATGTTGCCGAAGATATTATCAA
CTTAAGTGCCATCCCGTCCTCAACGCGTCAGGACATGCATACCTTTCCTC
CTGCGCCCTTTTCGAATGAGCATCTTCAGCACCAACATGACCAATCCGTC
ATGGCCATGGATCCGTTTTTGCCGGAAACAGAGCAAGATCAACTCACCAT
CAATGTTCCACTACCGATGCCGTTGTCGCTGGATCGCACCGTATTGCCTA
CGTCTGAACCTGAGCCTACGTCACGTTTTCATGCACCCTGGTTCTAG
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protein sequence of Ggra2775.t1

>Ggra2775.t1 ID=Ggra2775.t1|Name=Ggra2775.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=299bp
MLNELTQVQPVRHATSAPSQLQPPTNHHPSFLAQYSYAPQHFQSTEPHLP
RHNAAPLRATFQHQQQHQSSQHQPYSSAPVLNRPLHLTHNSVLPPPATSF
TSKHQHVAPSHHLTAASIPDLVRPSPPLAPSAPHLPHPHTSLPPTSVRPS
RTLSQHAALSQHSLPPHHKQQRSILQSPHASLLHPAPTSHNPVPLPALTS
ANFKQPIDVDVAEDIINLSAIPSSTRQDMHTFPPAPFSNEHLQHQHDQSV
MAMDPFLPETEQDQLTINVPLPMPLSLDRTVLPTSEPEPTSRFHAPWF*
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mRNA from alignment at tig00000005_pilon:1510094..1511385-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2775.t1 ID=Ggra2775.t1|Name=Ggra2775.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1292bp|location=Sequence derived from alignment at tig00000005_pilon:1510094..1511385- (Gracilaria gracilis GNS1m male)
ATGCTCAACGAACTCACCCAAGTGCAGCCGGTAAGGCACGCTACCTCAGC
TCCCTCCCAATTACAACCACCCACAAACCATCACCCCTCCTTTCTCGCCC
AGTACTCGTATGCACCGCAGCACTTTCAATCCACCGAACCGCACCTTCCT
CGTCACAATGCCGCGCCCTTGCGAGCTACTTTCCAACACCAACAACAGCA
CCAATCCTCGCAACACCAGCCTTATTCCTCTGCTCCTGTTTTGAACCGCC
CTCTACATCTCACCCACAATTCTGTACTTCCTCCACCGGCTACGTCCTTC
ACGTCCAAGCATCAACATGTTGCACCATCCCATCATCTTACAGCTGCTTC
TATTCCGGATCTCGTGCGTCCTTCGCCTCCGTTGGCCCCTTCTGCCCCGC
ATCTCCCACATCCTCATACTTCTCTTCCACCCACCTCGGTGCGTCCGTCG
CGAACCTTATCTCAACATGCTGCGCTTTCACAACATTCTTTACCGCCGCA
CCACAAGCAACAACGTTCTATTCTTCAATCACCGGTTTCTTATGCGCCGC
CACAACATCATTTACATCCTCCTCCATCCTATTCTTCCTCCTTGTTGCAC
GCCTCTTCTCATCAATATGCGTCGCAACAGCAACCTCAACATTTCCAACA
AATGCATCATCGTTCCGTCTCACATCAATCGCAACAACCTCAGCAACAAC
ATCAACATCAACTTCAACAACAACAACATCATCAACCTCAACCCCAACAC
CAACTGCCTCAACGTCAACGTCAACAACAACAACACCATCACACCACCAA
GCACGCTTCATTGCTCCACCCAGCCCCAACCTCTCATAATCCCGTCCCGC
TGCCGGCGCTCACTTCCGCCAACTTTAAGCAACCGATCGATGTCGATGTT
GCCGAAGATATTATCAACTTAAGTGCCATCCCGTCCTCAACGCGTCAGGA
CATGCATACCTTTCCTCCTGCGCCCTTTTCGAATGAGCATCTTCAGCACC
AACATGACCAATCCGTCATGGCCATGGATCCGTTTTTGCCGGAAACAGAG
CAAGATCAACTCACCATCAATGTTCCACTACCGATGCCGTTGTCGCTGGA
TCGCACCGTATTGCCTACGTCTGAACCTGAGCCTACGGTACGCCATGCGC
ATTCGTTTGTTAATAGTCAATCGGCGATGCACTCGCAGCAACCGTCAAAT
ACGCTTGTATCACAACCGTCTCACCAAATGCCGTACTCGGCGCATTCGTC
TGCGCTTCCAAGCAGTCACGTTTTCATGCACCCTGGTTCTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:1510094..1511385-

>Ggra2775.t1 ID=Ggra2775.t1|Name=Ggra2775.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00000005_pilon:1510094..1511385- (Gracilaria gracilis GNS1m male)
ATGCTCAACGAACTCACCCAAGTGCAGCCGGTAAGGCACGCTACCTCAGC
TCCCTCCCAATTACAACCACCCACAAACCATCACCCCTCCTTTCTCGCCC
AGTACTCGTATGCACCGCAGCACTTTCAATCCACCGAACCGCACCTTCCT
CGTCACAATGCCGCGCCCTTGCGAGCTACTTTCCAACACCAACAACAGCA
CCAATCCTCGCAACACCAGCCTTATTCCTCTGCTCCTGTTTTGAACCGCC
CTCTACATCTCACCCACAATTCTGTACTTCCTCCACCGGCTACGTCCTTC
ACGTCCAAGCATCAACATGTTGCACCATCCCATCATCTTACAGCTGCTTC
TATTCCGGATCTCGTGCGTCCTTCGCCTCCGTTGGCCCCTTCTGCCCCGC
ATCTCCCACATCCTCATACTTCTCTTCCACCCACCTCGGTGCGTCCGTCG
CGAACCTTATCTCAACATGCTGCGCTTTCACAACATTCTTTACCGCCGCA
CCACAAGCAACAACGTTCTATTCTTCAATCACCGCACGCTTCATTGCTCC
ACCCAGCCCCAACCTCTCATAATCCCGTCCCGCTGCCGGCGCTCACTTCC
GCCAACTTTAAGCAACCGATCGATGTCGATGTTGCCGAAGATATTATCAA
CTTAAGTGCCATCCCGTCCTCAACGCGTCAGGACATGCATACCTTTCCTC
CTGCGCCCTTTTCGAATGAGCATCTTCAGCACCAACATGACCAATCCGTC
ATGGCCATGGATCCGTTTTTGCCGGAAACAGAGCAAGATCAACTCACCAT
CAATGTTCCACTACCGATGCCGTTGTCGCTGGATCGCACCGTATTGCCTA
CGTCTGAACCTGAGCCTACGTCACGTTTTCATGCACCCTGGTTCTAG
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